View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_40 (Length: 323)
Name: NF20706_low_40
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 53344908 - 53344595
Alignment:
| Q |
18 |
aattttcgctggttttcattcatcaattttgagacgattctcaaaaatctagttttcttaattcttcggctgagattaagacatacgtgggcaagttgtt |
117 |
Q |
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| T |
53344908 |
aattttcgctcgttttcattcatcaattttgtgacaattctcaaaaatctagttttcttagttcttcggctgagattaagacatacgtgggcaagttgtt |
53344809 |
T |
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| Q |
118 |
tgtcactgacatgatatagctattgaataatggtagggttgtgttggcatattttattagcacacgcaactcatattcatttaaatcatgtttcatcaat |
217 |
Q |
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| T |
53344808 |
tgtcactgacatgatatagctattgaataatggtagggttgtgttggcatattttattagcacacgcaactcatattcatttaaatcatgtttcatcaat |
53344709 |
T |
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| Q |
218 |
ttacttggccatcccatga----------agggggaaagagtgaaaaataactcaaagtcaaaaatcac-------tttcaaatatttaaaatatcaccc |
300 |
Q |
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| T |
53344708 |
ttacttggccatcccatgatcccatcattagggggaaagagtgaaaaataact--aagtcaaaaatcactttcaaatttcaaatattcaaaatatcactc |
53344611 |
T |
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| Q |
301 |
tttctgtttcatttca |
316 |
Q |
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|||||||||||||||| |
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| T |
53344610 |
tttctgtttcatttca |
53344595 |
T |
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