View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_47 (Length: 295)
Name: NF20706_low_47
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 47521808 - 47522084
Alignment:
| Q |
11 |
taatactgtcggtttttcttttggttattatatgtggtggcatcaacttcttaattgtttgtgtataggttgattgtcgnnnnnnnnnnnn-caccagga |
109 |
Q |
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| T |
47521808 |
taatagtgtcggtttttcttttggttattatatgtggtggcatcaacttcttaattgtttgtgtataggttgactgtcgttttttcttttttcattagga |
47521907 |
T |
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| Q |
110 |
tactatgttgtaactttgattagctctcttattcataccttgtgttagagagtagc-tttttcaattgtgataatgtatttcattttagtttgtt-nnnn |
207 |
Q |
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| T |
47521908 |
tactatgttgtaactttgattagctctcttattcataccttgtgttagagagtagcttttttccattgtgataatatattttattttagtttgttaaaaa |
47522007 |
T |
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| Q |
208 |
nnnntacttcaaaaggtacaaagaatatgaattttccaatactatttttagtacagaaaaagtatccaataaaatga |
284 |
Q |
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| T |
47522008 |
aaaatacttcaaaaggtacaaagaatatgaattttccaacactatttttagtgcagaaaaagtatccaataaaatga |
47522084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 18606183 - 18606146
Alignment:
| Q |
22 |
gtttttcttttggttattatatgtggtggcatcaactt |
59 |
Q |
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| T |
18606183 |
gtttttcttttggttatcatatgtggtggcagcaactt |
18606146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 18670713 - 18670861
Alignment:
| Q |
22 |
gtttttcttttggttattatatgtggtggcatcaacttcttaattgtttgtgtataggttgattgtcgnnnnnnnnnnnncaccaggatactatgttgta |
121 |
Q |
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| T |
18670713 |
gtttttcttttggttaccatatgtggtggcagcaaccccttacttgtttgggtataggttgattgtcgttttatttgtttcctcaggatactatgttgta |
18670812 |
T |
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| Q |
122 |
actttgattagctctcttattcataccttgtgttagagagtagcttttt |
170 |
Q |
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| T |
18670813 |
actttgatttgctctcctatgcacaccttgtgctaaggagtagcttttt |
18670861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 30255635 - 30255699
Alignment:
| Q |
23 |
tttttcttttggttattatatgtggtggcatcaacttcttaattgtttgtgtataggttgattgt |
87 |
Q |
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| T |
30255635 |
tttttcttttggttaccatatgtggtggcagcaaccccttgtttgtttggggataggttgattgt |
30255699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 3371714 - 3371780
Alignment:
| Q |
23 |
tttttcttttggttattatatgtggtggcatcaacttcttaattgtttgtgtataggttgattgtcg |
89 |
Q |
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| T |
3371714 |
tttttcttttggttaccatatgtggtggcaacaacctctaacttatttgtgtataggttgactgtcg |
3371780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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