View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20706_low_5 (Length: 610)

Name: NF20706_low_5
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20706_low_5
NF20706_low_5
[»] chr2 (10 HSPs)
chr2 (265-436)||(39812078-39812250)
chr2 (286-436)||(32246607-32246758)
chr2 (265-436)||(44312714-44312885)
chr2 (291-459)||(11099054-11099219)
chr2 (316-436)||(19344243-19344364)
chr2 (316-436)||(19349101-19349222)
chr2 (265-457)||(9296503-9296691)
chr2 (265-457)||(14291295-14291483)
chr2 (300-457)||(25403443-25403595)
chr2 (300-457)||(25398305-25398457)
[»] chr8 (16 HSPs)
chr8 (265-436)||(39784913-39785086)
chr8 (265-460)||(6311097-6311292)
chr8 (457-603)||(38613611-38613757)
chr8 (265-436)||(25328368-25328540)
chr8 (265-458)||(7290016-7290211)
chr8 (264-457)||(4760176-4760366)
chr8 (265-457)||(36979184-36979372)
chr8 (286-457)||(30655448-30655617)
chr8 (291-466)||(10689270-10689442)
chr8 (316-436)||(35745213-35745335)
chr8 (265-457)||(18853270-18853457)
chr8 (265-457)||(18870664-18870849)
chr8 (286-421)||(33037928-33038063)
chr8 (343-436)||(10684432-10684528)
chr8 (317-457)||(1262103-1262238)
chr8 (383-459)||(19752609-19752683)
[»] chr7 (18 HSPs)
chr7 (291-436)||(31109700-31109844)
chr7 (265-436)||(12396735-12396906)
chr7 (265-436)||(12406155-12406326)
chr7 (265-436)||(4866553-4866725)
chr7 (314-436)||(24024467-24024589)
chr7 (265-436)||(19992135-19992307)
chr7 (265-436)||(21812329-21812501)
chr7 (314-457)||(20357697-20357837)
chr7 (300-459)||(2057763-2057921)
chr7 (300-457)||(1533579-1533730)
chr7 (343-436)||(16879894-16879990)
chr7 (343-436)||(16884750-16884846)
chr7 (317-457)||(21645818-21645953)
chr7 (343-436)||(24261491-24261587)
chr7 (343-436)||(24266370-24266466)
chr7 (382-457)||(2479148-2479221)
chr7 (382-461)||(47263485-47263562)
chr7 (317-457)||(21639620-21639755)
[»] chr4 (11 HSPs)
chr4 (265-436)||(45347907-45348079)
chr4 (265-436)||(45357386-45357558)
chr4 (265-436)||(9224497-9224668)
chr4 (265-436)||(9229284-9229455)
chr4 (265-458)||(51520257-51520452)
chr4 (265-458)||(56146801-56146996)
chr4 (267-436)||(5732486-5732653)
chr4 (265-436)||(18855549-18855721)
chr4 (314-436)||(3813846-3813970)
chr4 (265-457)||(24741748-24741935)
chr4 (314-457)||(29760449-29760588)
[»] chr6 (15 HSPs)
chr6 (265-436)||(14737666-14737838)
chr6 (265-436)||(14742526-14742697)
chr6 (265-436)||(28184325-28184500)
chr6 (267-436)||(11856795-11856964)
chr6 (265-436)||(22010787-22010958)
chr6 (265-436)||(6438324-6438495)
chr6 (265-436)||(28155660-28155832)
chr6 (314-457)||(30125944-30126084)
chr6 (316-436)||(6005239-6005361)
chr6 (316-436)||(16838566-16838688)
chr6 (322-418)||(33330594-33330690)
chr6 (343-418)||(5343322-5343397)
chr6 (343-436)||(33336112-33336207)
chr6 (300-457)||(5674905-5675057)
chr6 (382-457)||(31936398-31936470)
[»] scaffold0135 (1 HSPs)
scaffold0135 (265-436)||(35152-35323)
[»] chr3 (17 HSPs)
chr3 (265-436)||(22173285-22173456)
chr3 (267-436)||(18656256-18656423)
chr3 (265-459)||(7167049-7167239)
chr3 (265-457)||(2671688-2671876)
chr3 (291-457)||(28503982-28504145)
chr3 (316-436)||(2677229-2677351)
chr3 (316-436)||(2673073-2673195)
chr3 (316-436)||(10207755-10207877)
chr3 (343-436)||(8512037-8512132)
chr3 (343-436)||(8516917-8517012)
chr3 (316-410)||(24967957-24968051)
chr3 (348-457)||(40372980-40373085)
chr3 (348-457)||(8739249-8739354)
chr3 (348-457)||(9091487-9091592)
chr3 (384-458)||(8477170-8477242)
chr3 (343-436)||(32475306-32475402)
chr3 (343-436)||(32480163-32480260)
[»] chr5 (23 HSPs)
chr5 (291-458)||(1457277-1457446)
chr5 (265-436)||(15044512-15044681)
chr5 (265-457)||(27444771-27444965)
chr5 (265-457)||(43592080-43592274)
chr5 (265-457)||(43598525-43598719)
chr5 (265-457)||(43604017-43604211)
chr5 (265-457)||(43609509-43609703)
chr5 (265-457)||(27449615-27449809)
chr5 (291-440)||(30631227-30631376)
chr5 (265-436)||(28807663-28807837)
chr5 (265-436)||(37556713-37556887)
chr5 (265-436)||(37561535-37561709)
chr5 (316-436)||(2785197-2785319)
chr5 (316-436)||(31401991-31402113)
chr5 (317-418)||(33791158-33791259)
chr5 (316-436)||(31397134-31397256)
chr5 (317-418)||(33768021-33768122)
chr5 (300-457)||(38191983-38192135)
chr5 (300-457)||(38219208-38219360)
chr5 (392-457)||(31180079-31180142)
chr5 (317-457)||(24135659-24135794)
chr5 (291-336)||(31180138-31180184)
chr5 (401-457)||(35387474-35387527)
[»] scaffold0355 (2 HSPs)
scaffold0355 (265-436)||(9732-9902)
scaffold0355 (316-436)||(28-143)
[»] chr1 (11 HSPs)
chr1 (265-436)||(44023964-44024135)
chr1 (265-436)||(39445322-39445494)
chr1 (265-436)||(1055102-1055274)
chr1 (265-436)||(25445180-25445352)
chr1 (291-436)||(41398060-41398211)
chr1 (362-436)||(41386571-41386646)
chr1 (317-457)||(24202919-24203054)
chr1 (316-418)||(43988607-43988709)
chr1 (314-421)||(24787514-24787624)
chr1 (291-359)||(41390486-41390556)
chr1 (401-457)||(19359079-19359132)
[»] scaffold0464 (1 HSPs)
scaffold0464 (265-436)||(185-357)
[»] scaffold0127 (1 HSPs)
scaffold0127 (362-436)||(34136-34211)
[»] scaffold0197 (2 HSPs)
scaffold0197 (316-436)||(19306-19428)
scaffold0197 (343-436)||(14477-14573)
[»] scaffold0028 (1 HSPs)
scaffold0028 (316-436)||(149097-149219)
[»] scaffold0978 (1 HSPs)
scaffold0978 (314-458)||(386-528)
[»] scaffold0259 (1 HSPs)
scaffold0259 (316-436)||(2392-2514)
[»] scaffold1333 (1 HSPs)
scaffold1333 (19-113)||(467-562)
[»] scaffold0479 (1 HSPs)
scaffold0479 (375-436)||(13171-13233)
[»] scaffold0009 (1 HSPs)
scaffold0009 (343-436)||(182132-182228)
[»] scaffold0087 (1 HSPs)
scaffold0087 (317-457)||(44111-44247)
[»] scaffold0188 (1 HSPs)
scaffold0188 (401-457)||(24278-24331)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 39812078 - 39812250
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctcttgtgtggttttgctatacactagcttagggctgttttgttgttgtcggct 364  Q
    |||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39812078 tgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtgtggttttgctatacactagcttagggctgttttgttgttgttggct 39812177  T
Q  365 tggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  39812178 tggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatttcattggtgtga 39812250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 286 - 436
Target Start/End: Complemental strand, 32246758 - 32246607
Alignment:
Q  286 gcttgtcttgtttatgctttggaatctcttgtgtggttttgctatacactagcttagggctgttttgttgttgtcggcttggagaccatttgttctcatt 385  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||  |||||||||||||||||||||||     
T  32246758 gcttatcttgtttatgctttggaatctcttgtgtggttttgctatacactagtctaggactgttttgttgttgttagcttggagaccatttgttctcata 32246659  T
Q  386 gattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32246658 gattaccactatcacttgctccacacatcattggtttatttcattggtgtga 32246607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 44312714 - 44312885
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| | |||| ||||| |||||||| |||||||| ||||||| |||||||||||||||||||| |  |||||| | |||||||||||  ||    
T  44312714 tgttttgttcttccttttatcgcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacacttgtctagggcggctttgttgttgtttgc 44312812  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312813 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 44312885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 291 - 459
Target Start/End: Original strand, 11099054 - 11099219
Alignment:
Q  291 tcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgtttt-gttgttgtcggcttggagaccatttgttctcattgat 388  Q
    |||||||| |||||||| ||||||| ||||||||||||| ||||||||  |||||||||||| |||||||| | |||||| |||||||  | ||||||||    
T  11099054 tcttgttt-tgctttggtatctctttgtgtggttttgctctacactagtctagggctgtttttgttgttgttg-cttggaaaccattttgt-tcattgat 11099150  T
Q  389 taccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 459  Q
    |||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||| ||||||||||    
T  11099151 taccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccggattcacaacaga 11099219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 316 - 436
Target Start/End: Complemental strand, 19344364 - 19344243
Alignment:
Q  316 gtgtggttttgctatacactag-cttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatc 414  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||  |||||||| ||||||| |||||| ||||||||||||| |||||||||||||||    
T  19344364 gtgtggttttgctatacattaggcttagg-ctgttttgttgttgttagcttggaggccatttgctctcatagattaccactatctcttgctccacacatc 19344266  T
Q  415 att-gtttatttcattggtgtga 436  Q
     || |||||||||||||||||||    
T  19344265 tttggtttatttcattggtgtga 19344243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 316 - 436
Target Start/End: Complemental strand, 19349222 - 19349101
Alignment:
Q  316 gtgtggttttgctatacactag-cttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatc 414  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||  |||||||| ||||||| |||||| ||||||||||||| |||||||||||||||    
T  19349222 gtgtggttttgctatacattaggcttagg-ctgttttgttgttgttagcttggaggccatttgctctcatagattaccactatctcttgctccacacatc 19349124  T
Q  415 att-gtttatttcattggtgtga 436  Q
     || |||||||||||||||||||    
T  19349123 tttggtttatttcattggtgtga 19349101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 265 - 457
Target Start/End: Original strand, 9296503 - 9296691
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgtttt-gttgttgtcgg 362  Q
    |||||||||||| |||||   |||| |||||||| |||||||  ||||||| ||||||||||||| ||||||||  |||||||||||| ||||||||  |    
T  9296503 tgttttgttctt-cctttcttgcttttcttgttt-tgctttgttatctctttgtgtggttttgctctacactagactagggctgtttttgttgttgtttg 9296600  T
Q  363 cttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    |||||| ||||||| | ||||| ||||||||||| |  |||||||||||||| ||||||   |||||||||||||||| ||||||| ||||||||    
T  9296601 cttggaaaccattt-tgctcatagattaccactaccttttgctccacacatctttgttt---tcattggtgtgagttttaaccggattcacaaca 9296691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 265 - 457
Target Start/End: Complemental strand, 14291483 - 14291295
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgtttt-gttgttgtcgg 362  Q
    |||||||||||| |||||   |||| |||||||| |||||||  ||||||| ||||||||||||| |||| |||  |||||||||||| ||||||||  |    
T  14291483 tgttttgttctt-cctttcttgcttatcttgttt-tgctttgttatctctttgtgtggttttgctctacattagtctagggctgtttttgttgttgtttg 14291386  T
Q  363 cttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    |||||| ||||||| | | ||||||||||||||||| ||||||||||||| | ||||   |||||||||||||||||| ||||||| ||||||||    
T  14291385 cttggaaaccattt-tgcccattgattaccactatctcttgctccacacacctttgt---tttcattggtgtgagttttaaccggattcacaaca 14291295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 300 - 457
Target Start/End: Complemental strand, 25403595 - 25403443
Alignment:
Q  300 tgctttggaatctcttgtgtggttttgctatacactagcttagggctgtttt-gttgttgtcggcttggagaccatttgttctcattgattaccactatc 398  Q
    ||||||| | ||||||||||||| ||||| ||||||||  |||||||||||| |||||||| | |||||||||  |||   | ||| ||||||||||  |    
T  25403595 tgctttgtattctcttgtgtggtgttgctctacactagtctagggctgtttttgttgttgttg-cttggagacacttta--cacatagattaccacttcc 25403499  T
Q  399 acttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
      |||||||||||||| |||||||   ||||||||||||||||||||||| ||||||||    
T  25403498 ttttgctccacacatctttgttta---cattggtgtgagtttcaaccggattcacaaca 25403443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 457
Target Start/End: Complemental strand, 25398457 - 25398305
Alignment:
Q  300 tgctttggaatctcttgtgtggttttgctatacactagcttagggctgtttt-gttgttgtcggcttggagaccatttgttctcattgattaccactatc 398  Q
    ||||||| | ||||||||||||| ||||| ||||||||  |||||||||||| |||||||| | |||||||||  |||   | ||| ||||||||||  |    
T  25398457 tgctttgtattctcttgtgtggtgttgctctacactagtctagggctgtttttgttgttgttg-cttggagacacttta--cacatagattaccacttcc 25398361  T
Q  399 acttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
      |||||||||||||| |||||||   |||||||||||||||||||| || ||||||||    
T  25398360 ttttgctccacacatctttgttta---cattggtgtgagtttcaaccagattcacaaca 25398305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 39784913 - 39785086
Alignment:
Q  265 tgttttgttctttccttt-accgcttgtcttgtttatgctttggaatctcttgtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  39784913 tgttttgttctttccttttaccgcttatcttgtttgtgctttggaatctcttgtgtggttttgctatacactagcttagggctgttttgttgttattggc 39785012  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  39785013 ttggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatttcattggtgtga 39785086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 265 - 460
Target Start/End: Complemental strand, 6311292 - 6311097
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| |||||   |||| ||||||||||||||||  ||||||| ||||||||||||||||||||||  |||||||| |||||||||||  ||    
T  6311292 tgttttgttctt-cctttcttgcttatcttgtttatgctttgttatctcttagtgtggttttgctatacactagtctagggctgctttgttgttgtttgc 6311194  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacagaa 460  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6311193 ttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggattcacaacagaa 6311097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 457 - 603
Target Start/End: Complemental strand, 38613757 - 38613611
Alignment:
Q  457 agaagcaaaattcagcagattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 556  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613757 agaagcaaaatcgagctgattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 38613658  T
Q  557 aaaattactcataattttgaaacctgggaccagagatgatgatgatg 603  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  38613657 aaaattactcataattttgaaagctgggaccagagaagatgatgatg 38613611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 25328368 - 25328540
Alignment:
Q  265 tgttttgttcttt-cctttaccgcttgtcttgtttatgctttggaatctcttgtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    ||||||||||||| ||||||||| || ||| ||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| |||    
T  25328368 tgttttgttcttttcctttaccgtttatctcgtttatgttttggtatctcttgtgtggttttgctatacactag-ttagggttgttttgttgttgttggc 25328466  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatttcattggtgtga 436  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||| |||||    
T  25328467 ttggagaccatttgttctcattgattatcactatcacttgctccgcacatcattgatttatttcattgttgtga 25328540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 265 - 458
Target Start/End: Original strand, 7290016 - 7290211
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| | |||| | ||| ||||||||||| ||||  ||||||| ||||||||||||||||||||||  |||||||| |||||||||||  |     
T  7290016 tgttttgttcttccttttatcacttatcttgtttatggtttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgt 7290115  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 458  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||||    
T  7290116 ttggagaccatttgttctcattgattaccactatctcttgctccacacatcaatgtttatttcattggtgtgagtttggaaccggattcacaacag 7290211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 264 - 457
Target Start/End: Original strand, 4760176 - 4760366
Alignment:
Q  264 atgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgtttt-gttgttgtcg 361  Q
    ||||||||||||| |||||   |||| ||||||||||||||||  ||||||| ||||||||||||| ||||||||  |||||||||||| |||||||| |    
T  4760176 atgttttgttctt-cctttcttgcttatcttgtttatgctttgttatctctttgtgtggttttgctctacactagtctagggctgtttttgttgttgttg 4760274  T
Q  362 gcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
     |||||| ||||||| | ||||||||||||||||||| || |||||||||||| |||||  |||||||| ||||||||||||||||| ||||||||    
T  4760275 -cttggaaaccattt-tgctcattgattaccactatctctagctccacacatctttgtt--tttcattgatgtgagtttcaaccggattcacaaca 4760366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 265 - 457
Target Start/End: Complemental strand, 36979372 - 36979184
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgtttt-gttgttgtcgg 362  Q
    |||||||||||| |||||   |||| |||||||| |||||||| ||||||| ||||||||||||| ||||||||  |||||||||||| |||||||| |     
T  36979372 tgttttgttctt-cctttcttgcttatcttgttt-tgctttggtatctctttgtgtggttttgctctacactagtctagggctgtttttgttgttgttg- 36979276  T
Q  363 cttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    |||||| |||||||  | |||||||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||| ||||||||    
T  36979275 cttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccggattcacaaca 36979184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 286 - 457
Target Start/End: Complemental strand, 30655617 - 30655448
Alignment:
Q  286 gcttgtcttgtttatgctttggaatctct-tgtgtggttttgctatacactagcttagggctgttttgttgttgtcg--gcttggagaccatttgttctc 382  Q
    |||| ||||||||||||||||  |||||| |||||||||||||| ||||||||  |||||||||||| ||||||| |  ||||||| |||||||  | ||    
T  30655617 gcttatcttgtttatgctttgttatctctatgtgtggttttgctctacactagtctagggctgtttt-ttgttgttgttgcttggaaaccattttgt-tc 30655520  T
Q  383 attgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    |||||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||||||| ||||||||    
T  30655519 attgattaccactatctcttgctccacacatctttgt---tttcattggtgtgagtttcaaccggattcacaaca 30655448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 291 - 466
Target Start/End: Original strand, 10689270 - 10689442
Alignment:
Q  291 tcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgtttt-gttgttgtcggcttggagaccatttgttctcattgat 388  Q
    |||||||| |||||||| ||||||| ||||||||||||| |||||||   ||||| |||||| |||||||| | |||||| |||||| |  ||||| |||    
T  10689270 tcttgttt-tgctttggtatctctttgtgtggttttgctctacactacactagggttgtttttgttgttgttg-cttggaaaccattaga-ctcatagat 10689366  T
Q  389 taccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacagaagcaaaa 466  Q
    |||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||| || ||||||| || |||||    
T  10689367 taccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccgaaaacacaacacaatcaaaa 10689442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 316 - 436
Target Start/End: Complemental strand, 35745335 - 35745213
Alignment:
Q  316 gtgtggttttgctatacactag-cttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatc 414  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||  |||||||| |||||||  ||||| ||||| | |||||||||||||||||||||    
T  35745335 gtgtggttttgctatacattaggcttagg-ctgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 35745237  T
Q  415 att-gtttatt-tcattggtgtga 436  Q
    ||| ||||||| ||||||||||||    
T  35745236 attggtttattctcattggtgtga 35745213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 265 - 457
Target Start/End: Original strand, 18853270 - 18853457
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggc-tgttttgttgttgtcgg 362  Q
    |||||||||||| |||||   |||| |||||||| |||||||| ||||||| ||||||||||||| || || ||  |||||| | |||| |||||||  |    
T  18853270 tgttttgttctt-cctttcttgcttatcttgttt-tgctttggtatctctttgtgtggttttgctctaaacaagtctagggcgtttttttttgttgtttg 18853367  T
Q  363 cttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    |||||| ||||||||  ||||| ||||||||||||| |||||||||||||||    ||| |||| ||||||||||||||||||||| ||||||||    
T  18853368 cttggaaaccatttga-ctcatagattaccactatctcttgctccacacatc----tttgtttcgttggtgtgagtttcaaccggattcacaaca 18853457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 265 - 457
Target Start/End: Original strand, 18870664 - 18870849
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| |||||   |||| |||||||| |||||||| ||||||| ||||||||||||| || || ||  |||||| ||||| |||||||  ||    
T  18870664 tgttttgttctt-cctttcttgcttatcttgttt-tgctttggtatctctttgtgtggttttgctctaaacaagtctagggc-gtttt-ttgttgtttgc 18870759  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    ||||| |||||||   ||||| |||||||| |||| ||||||||||||||| ||||||   |||||||||||||||||||||||| ||||||||    
T  18870760 ttggaaaccatttaa-ctcatagattaccattatctcttgctccacacatctttgttt---tcattggtgtgagtttcaaccggattcacaaca 18870849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 286 - 421
Target Start/End: Original strand, 33037928 - 33038063
Alignment:
Q  286 gcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttt--tgttgttgtcggcttggagaccatttgttctc 382  Q
    |||| |||||||| |||||||| ||||||| ||||||||||||| ||||||||  |||||||||||  ||||||||| | |||||| |||||||  | ||    
T  33037928 gcttatcttgttt-tgctttggtatctctttgtgtggttttgctctacactagtctagggctgtttattgttgttgttg-cttggaaaccattttgt-tc 33038024  T
Q  383 attgattaccactatcacttgctccacacatcattgttt 421  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  33038025 attgattaccactatctcttgctccacacatctttgttt 33038063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 436
Target Start/End: Original strand, 10684432 - 10684528
Alignment:
Q  343 ggctgttttgttgttg-tcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 436  Q
    |||||||||||||||| |  |||||||| |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  10684432 ggctgttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 10684528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 457
Target Start/End: Original strand, 1262103 - 1262238
Alignment:
Q  317 tgtggttttgctatacactagcttagggctgtttt-gttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatca 415  Q
    |||||| ||||| ||||||||  |||||||||||| |||||||| | |||||||||  |||   ||||| ||||||||||  |  || |||||||||||     
T  1262103 tgtggtgttgctctacactagactagggctgtttttgttgttgttg-cttggagacacttta--ctcatagattaccactcccttttactccacacatct 1262199  T
Q  416 ttgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    ||||||   |||||||||||||||| ||||||| ||||||||    
T  1262200 ttgttt---tcattggtgtgagttttaaccggattcacaaca 1262238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 459
Target Start/End: Original strand, 19752609 - 19752683
Alignment:
Q  383 attgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 459  Q
    |||||||||||||  |  |||||||||||||| |||||| |||||||||||||| |||  |||||| ||||||||||    
T  19752609 attgattaccacttccttttgctccacacatctttgttt-tttcattggtgtga-tttttaccggattcacaacaga 19752683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 291 - 436
Target Start/End: Original strand, 31109700 - 31109844
Alignment:
Q  291 tcttgtttatgctttggaatctcttgtgtggttttgctatacactagcttagggctgttttgttgttgtcggcttggagaccatttgttctcattgatta 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31109700 tcttgtttatgctttggaatctcttgtgtggttttgctatacactag-ttagggctgttttgttgttgttggcttggagaccatttgttctcattgatta 31109798  T
Q  391 ccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
     |||||||||||||| ||||||||||||||||||||||||||||||    
T  31109799 tcactatcacttgctgcacacatcattgtttatttcattggtgtga 31109844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 265 - 436
Target Start/End: Complemental strand, 12396906 - 12396735
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| |||||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||||  |||||||| |||||||||||  ||    
T  12396906 tgttttgttcttccctttaccgcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgc 12396808  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12396807 ttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 12396735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 265 - 436
Target Start/End: Complemental strand, 12406326 - 12406155
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||||| |||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||||  |||||||| |||||||||||  ||    
T  12406326 tgttttgttctttcttttaccgcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgc 12406228  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12406227 ttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 12406155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 265 - 436
Target Start/End: Complemental strand, 4866725 - 4866553
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggtttt-gctatacactagcttagggctgttttgttgttgtcgg 362  Q
    |||||||||||| | |||||||||| |||||||| |||||||| |||| || |||||||||| ||||||||||||  |||| |||||||||||||||  |    
T  4866725 tgttttgttcttccttttaccgcttatcttgttt-tgctttggtatctttttgtgtggtttttgctatacactagtctaggactgttttgttgttgtttg 4866627  T
Q  363 cttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4866626 cttggagaccatttgtcctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 4866553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 314 - 436
Target Start/End: Original strand, 24024467 - 24024589
Alignment:
Q  314 ttgtgtggttttgctatacactag-cttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacaca 412  Q
    |||||||||||||||||| ||||| | |||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24024467 ttgtgtggttttgctatatactagtcatagg-ctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacaca 24024565  T
Q  413 tcattgtttatttcattggtgtga 436  Q
    ||||||||||||||||||||||||    
T  24024566 tcattgtttatttcattggtgtga 24024589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 265 - 436
Target Start/End: Complemental strand, 19992307 - 19992135
Alignment:
Q  265 tgttttgttctttccttt-accgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcgg 362  Q
    |||||||||||||||||| |||| || |||||||||||||| |  | ||||| ||||||||||||||||||||||||||||||||||| ||||||||  |    
T  19992307 tgttttgttctttccttttaccgtttatcttgtttatgctt-gttagctctttgtgtggttttgctatacactagcttagggctgttt-gttgttgtaag 19992210  T
Q  363 cttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    ||||||  |||||||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||||||||    
T  19992209 cttggaagccatttgttctcattgattatcactatcacctgctccacacatctttggtttatttcattggtgtga 19992135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 21812329 - 21812501
Alignment:
Q  265 tgttttgttctttccttt-accgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcgg 362  Q
    ||||||||||||| |||| |||| || ||||||||||||||   || ||||| ||||||||||||||||||||||||||||||||||| ||||||||  |    
T  21812329 tgttttgttcttttcttttaccgtttatcttgtttatgcttgttaa-ctctttgtgtggttttgctatacactagcttagggctgttt-gttgttgttag 21812426  T
Q  363 cttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    ||||||  ||||||| |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  21812427 cttggaagccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 21812501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 314 - 457
Target Start/End: Original strand, 20357697 - 20357837
Alignment:
Q  314 ttgtgtggttttgctatacactagcttagggctgtttt-gttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacaca 412  Q
    ||||||||||||||| ||||||||  |||||||||||| ||||||||  ||||||||||||||||  ||||| ||||||||||||| |||||||||||||    
T  20357697 ttgtgtggttttgctctacactagtctagggctgtttttgttgttgttagcttggagaccatttgg-ctcatagattaccactatctcttgctccacaca 20357795  T
Q  413 tcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    || ||||||   |||||||||||||||||||||||| ||||||||    
T  20357796 tctttgttt---tcattggtgtgagtttcaaccggattcacaaca 20357837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 300 - 459
Target Start/End: Complemental strand, 2057921 - 2057763
Alignment:
Q  300 tgctttggaatctctt-gtgtggttttgctatacactagcttagggctgtttt-gttgttgtcggcttggagaccatttgttctcattgattaccactat 397  Q
    |||||||| ||||||| ||||||||||||| || || ||  |||||| ||||| ||||||||  ||||||| ||||||||  ||||| ||||||||||||    
T  2057921 tgctttggtatctctttgtgtggttttgctctaaacaagtctagggcggtttttgttgttgtttgcttggaaaccatttga-ctcatagattaccactat 2057823  T
Q  398 cacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 459  Q
    | ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||||    
T  2057822 ctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattcacaacaga 2057763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 300 - 457
Target Start/End: Original strand, 1533579 - 1533730
Alignment:
Q  300 tgctttggaatctcttgtgtggttttgctatacactagcttagggctg-ttttgttgttgtcggcttggagaccatttgttctcattgattaccactatc 398  Q
    ||||||| | |||||| |||||| ||||| ||||||||  | |||||| |||||||||||| | |||||| ||  ||| ||||||||||||||||||||     
T  1533579 tgctttgtattctctt-tgtggtgttgctctacactagactggggctggttttgttgttgttg-cttggaaac--ttttttctcattgattaccactata 1533674  T
Q  399 acttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
      |||||||||||||| ||||   |||||||||||||||||| ||||||| ||||||||    
T  1533675 ttttgctccacacatctttgt---tttcattggtgtgagttttaaccggattcacaaca 1533730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 436
Target Start/End: Complemental strand, 16879990 - 16879894
Alignment:
Q  343 ggctgttttgttgttg-tcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 436  Q
    |||||||||||||||| |  |||||||| |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  16879990 ggctgttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 16879894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 436
Target Start/End: Complemental strand, 16884846 - 16884750
Alignment:
Q  343 ggctgttttgttgttg-tcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 436  Q
    |||||||||||||||| |  |||||||| |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  16884846 ggctgttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 16884750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 457
Target Start/End: Complemental strand, 21645953 - 21645818
Alignment:
Q  317 tgtggttttgctatacactagcttagggctgtttt-gttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatca 415  Q
    |||||| ||||| ||||||||  |||||||||||| |||||||| | |||||||||  |||   ||||| ||||||||||  |  ||||||||||||||     
T  21645953 tgtggtgttgctctacactagactagggctgtttttgttgttgttg-cttggagacacttta--ctcatagattaccactcccttttgctccacacatct 21645857  T
Q  416 ttgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    |||||||   ||||||||||||||| ||||||| ||||||||    
T  21645856 ttgttta---cattggtgtgagttttaaccggattcacaaca 21645818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 436
Target Start/End: Original strand, 24261491 - 24261587
Alignment:
Q  343 ggctgttttgttgttg-tcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 436  Q
    |||||||||||||||| |  |||||||| |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  24261491 ggctgttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 24261587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 436
Target Start/End: Original strand, 24266370 - 24266466
Alignment:
Q  343 ggctgttttgttgttg-tcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 436  Q
    |||||||||||||||| |  |||||||| |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  24266370 ggctgttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 24266466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 457
Target Start/End: Complemental strand, 2479221 - 2479148
Alignment:
Q  382 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 457  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  2479221 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 2479148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 461
Target Start/End: Complemental strand, 47263562 - 47263485
Alignment:
Q  382 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaacagaag 461  Q
    |||||||||||||| ||  ||||||||| |||| ||||||  ||||||||||||| | |||||||||| ||||||||||||    
T  47263562 cattgattaccact-tcctttgctccacgcatctttgttt--ttcattggtgtgattatcaaccggaactcacaacagaag 47263485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 457
Target Start/End: Complemental strand, 21639755 - 21639620
Alignment:
Q  317 tgtggttttgctatacactagcttagggctgtttt-gttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatca 415  Q
    |||||| ||||| ||||||||  |||||||||||| |||||||| | |||||||||  |||   ||||| ||||||||||  |  ||||||||||||||     
T  21639755 tgtggtgttgctctacactagactagggctgtttttgttgttgttg-cttggagacacttta--ctcatagattaccactcccttttgctccacacatct 21639659  T
Q  416 ttgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    |||||||   ||||| ||||||||| || |||| ||||||||    
T  21639658 ttgttta---cattgatgtgagttttaatcggattcacaaca 21639620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 45347907 - 45348079
Alignment:
Q  265 tgttttgttctttccttt-accgcttgtcttgtttatgctttggaatctcttgtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||  |||| |||||||||||||||  ||    
T  45347907 tgttttgttctttccttttaccgcttatcttgtttgtgctttggaatctcttgtgtggttttgctttacactagtctaggactgttttgttgttgttagc 45348006  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45348007 ttgaagaccatttgttctcatagattaccactatcacttgctccacacatcattgtttatttcattggtgtga 45348079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 45357386 - 45357558
Alignment:
Q  265 tgttttgttctttccttt-accgcttgtcttgtttatgctttggaatctcttgtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||  |||| |||||||||||||||  ||    
T  45357386 tgttttgttctttccttttaccgcttatcttgtttgtgctttggaatctcttgtgtggttttgctttacactagtctaggactgttttgttgttgttagc 45357485  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45357486 ttgaagaccatttgttctcatagattaccactatcacttgctccacacatcattgtttatttcattggtgtga 45357558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 9224497 - 9224668
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| | |||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||||  ||||||||||||||||||||  ||    
T  9224497 tgttttgttcttccttttaccgcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgc 9224595  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9224596 ttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 9224668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 9229284 - 9229455
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| | |||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||||  ||||||||||||||||||||  ||    
T  9229284 tgttttgttcttccttttaccgcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgc 9229382  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9229383 ttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 9229455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 265 - 458
Target Start/End: Complemental strand, 51520452 - 51520257
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| | |||| | ||| ||||||||||||||||  ||||||| || |||||||||||||||||||  |||||||| |||||||||||  ||    
T  51520452 tgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtatggttttgctatacactagtctagggctgctttgttgttgtttgc 51520353  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 458  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  51520352 ttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaacag 51520257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 265 - 458
Target Start/End: Original strand, 56146801 - 56146996
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| | |||| | ||| ||||||||||||||||  ||||||| ||||||||||||||||||||||  |||||||| |||||||||||  ||    
T  56146801 tgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgc 56146900  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 458  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||    
T  56146901 ttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgaatttggaaccggattcacaacag 56146996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 267 - 436
Target Start/End: Complemental strand, 5732653 - 5732486
Alignment:
Q  267 ttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggctt 365  Q
    |||||||||||||||||||| || ||||||||  ||||||  | ||||| |||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  5732653 ttttgttctttcctttaccgtttatcttgttt--gctttgttagctctttgtgtggttttactatacactagcttagggctgttttgttgttgttagctt 5732556  T
Q  366 ggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  5732555 ggagaccatttgttctcattgattaccaccatcacttgctccacacatcattgtat-tttcattggtgtga 5732486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 265 - 436
Target Start/End: Complemental strand, 18855721 - 18855549
Alignment:
Q  265 tgttttgttctttccttt-accgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcgg 362  Q
    |||||||||||||||||| |||| || |||||||||||||| |  | ||||| ||||||||||||||||||||||||||||||||||| ||||||||  |    
T  18855721 tgttttgttctttccttttaccgtttatcttgtttatgctt-gttagctctttgtgtggttttgctatacactagcttagggctgttt-gttgttgtttg 18855624  T
Q  363 cttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    ||||||  |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  18855623 cttggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 18855549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 314 - 436
Target Start/End: Complemental strand, 3813970 - 3813846
Alignment:
Q  314 ttgtgtggtttt-gctatacactagcttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacaca 412  Q
    |||||||||||| || |||||||||  |||| |||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3813970 ttgtgtggtttttgcgatacactagtctaggactgttttgttgttgtttgcttggagaccatttgctctcattgattaccactatcacttgctccacaca 3813871  T
Q  413 tcatt-gtttatttcattggtgtga 436  Q
    ||||| |||||||||||||||||||    
T  3813870 tcattggtttatttcattggtgtga 3813846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 265 - 457
Target Start/End: Complemental strand, 24741935 - 24741748
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgtttt-gttgttgtcgg 362  Q
    |||||||||||| |||||   |||| |||||||| |||||||| ||||||| ||||||||||||| ||||||||  |||||||||||| |||||||| |     
T  24741935 tgttttgttctt-cctttcttgcttatcttgttt-tgctttggtatctctttgtgtggttttgctctacactagtctagggctgtttttgttgttgttg- 24741839  T
Q  363 cttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    |||||| |||||||  | |||||||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||||||| ||||||||    
T  24741838 cttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgt---tttcattggtgtgagtttcaaccggattcacaaca 24741748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 314 - 457
Target Start/End: Complemental strand, 29760588 - 29760449
Alignment:
Q  314 ttgtgtggttttgctatacactagcttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacat 413  Q
    ||||||||||||||| ||||||||  ||||| |||||||||||||| | |||||| |||||||  | | |||||||||||||||| ||||||||||||||    
T  29760588 ttgtgtggttttgctctacactagtctagggttgttttgttgttgttg-cttggaaaccattttgttt-attgattaccactatctcttgctccacacat 29760491  T
Q  414 cattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    | ||||||  ||||||||||||||||||||||||| ||||||||    
T  29760490 ctttgttt--ttcattggtgtgagtttcaaccggattcacaaca 29760449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 7e-63; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 14737666 - 14737838
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt--gtgtggttttgctatacactagcttagggctgttttgttgttgtcgg 362  Q
    |||||||||||||| |||||||||| |||||||| |||||||| |||||||  ||||||||||||||||||||||  ||||||||||||||||||||  |    
T  14737666 tgttttgttctttcttttaccgcttatcttgttt-tgctttggtatctcttttgtgtggttttgctatacactagtctagggctgttttgttgttgtttg 14737764  T
Q  363 cttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14737765 cttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtttatttcattggtgtga 14737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 14742526 - 14742697
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||||| |||||||||| |||||||| |||||||  ||||||| ||||||||||||||||||||||  ||||||||||||||||||||  ||    
T  14742526 tgttttgttctttcttttaccgcttatcttgttt-tgctttgatatctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtatgc 14742624  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14742625 ttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtttatttcattggtgtga 14742697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 265 - 436
Target Start/End: Complemental strand, 28184500 - 28184325
Alignment:
Q  265 tgttttgttctttccttt-accgcttgtcttgtttatgctttggaatctcttgtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||    
T  28184500 tgttttgttctttctttttaccgcttatcttgtttatgctttggaatctcttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgc 28184401  T
Q  364 ttggagacca--tttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  28184400 ttggagaccatttttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 28184325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 267 - 436
Target Start/End: Complemental strand, 11856964 - 11856795
Alignment:
Q  267 ttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggctt 365  Q
    |||||||||| | |||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||  ||||||||||||||||||||  ||||    
T  11856964 ttttgttcttccttttatcgcttgtcttgttt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgctt 11856866  T
Q  366 ggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11856865 ggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 11856795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 22010787 - 22010958
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| | |||| ||||| |||||||| |||||||| ||||||| |||||||||||||||||||| |  |||||| | |||||||||||  ||    
T  22010787 tgttttgttcttccttttatcgcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacacttgtctagggcggctttgttgttgtttgc 22010885  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22010886 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 22010958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 265 - 436
Target Start/End: Complemental strand, 6438495 - 6438324
Alignment:
Q  265 tgttttgttctttccttt-accgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcgg 362  Q
    |||||||||||||||||| |||| || |||||||||||||| |  | ||||| ||||||||||||||||||||||||||||||||||| ||||||||  |    
T  6438495 tgttttgttctttccttttaccgtttatcttgtttatgctt-gttagctctttgtgtggttttgctatacactagcttagggctgttt-gttgttgtttg 6438398  T
Q  363 cttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    ||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6438397 cttggaagccattggttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 6438324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 28155660 - 28155832
Alignment:
Q  265 tgttttgttctttcc-tttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactag-cttagggctgttttgttgttgtcg 361  Q
    ||||||||||||||| ||||||| || |||||||||||||| |  | ||||| ||||||||||||||||||| || | |||| |||||||||||||||      
T  28155660 tgttttgttctttccatttaccgtttatcttgtttatgctt-gttagctcttagtgtggttttgctatacacaagtcatagg-ctgttttgttgttgtta 28155757  T
Q  362 gcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    ||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  28155758 gcttgaagaccatttgctctcattgattatcactatcacttgctccacacatcattgtttattgcattggtgtga 28155832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 314 - 457
Target Start/End: Original strand, 30125944 - 30126084
Alignment:
Q  314 ttgtgtggttttgctatacactagcttagggctgtttt-gttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacaca 412  Q
    ||||||||||||||| ||||||||  |||||||||||| ||||| ||  ||||||||||||||||  ||||| ||||| ||||| | |||||||||||||    
T  30125944 ttgtgtggttttgctctacactagtctagggctgtttttgttgtagttagcttggagaccatttgg-ctcatagattatcactacctcttgctccacaca 30126042  T
Q  413 tcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    || ||||||   |||||||||||| ||||||||||| ||||||||    
T  30126043 tctttgttt---tcattggtgtgattttcaaccggattcacaaca 30126084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 316 - 436
Target Start/End: Complemental strand, 6005361 - 6005239
Alignment:
Q  316 gtgtggttttgctatacactag-cttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatc 414  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||  |||||||| |||||||  ||||| ||||| | |||||||||||||||||||||    
T  6005361 gtgtggttttgctatacattaggcttagg-ctgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 6005263  T
Q  415 att-gtttatt-tcattggtgtga 436  Q
    ||| ||||||| ||||||||||||    
T  6005262 attggtttattctcattggtgtga 6005239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 316 - 436
Target Start/End: Complemental strand, 16838688 - 16838566
Alignment:
Q  316 gtgtggttttgctatacactag-cttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatc 414  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||  ||||| || |||||||  ||||| ||||| | ||||||||||||||||| |||    
T  16838688 gtgtggttttgctatacattaggcttagg-ctgttttgttgttgttagcttgaaggccatttgcactcatagattatctctatcacttgctccacatatc 16838590  T
Q  415 att-gtttatt-tcattggtgtga 436  Q
    ||| ||||||| ||||||||||||    
T  16838589 attggtttattctcattggtgtga 16838566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 322 - 418
Target Start/End: Original strand, 33330594 - 33330690
Alignment:
Q  322 ttttgctatacacta-gcttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg 418  Q
    |||||||||||| || ||||| |||||||||||||||||  |||||||| |||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  33330594 ttttgctatacattaggctta-ggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattg 33330690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 343 - 418
Target Start/End: Complemental strand, 5343397 - 5343322
Alignment:
Q  343 ggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg 418  Q
    |||||||||||||||||  |||||||| |||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  5343397 ggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattg 5343322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 343 - 436
Target Start/End: Original strand, 33336112 - 33336207
Alignment:
Q  343 ggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 436  Q
    |||||||||||||||||  | |||||| |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  33336112 ggctgttttgttgttgttagtttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 33336207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 457
Target Start/End: Original strand, 5674905 - 5675057
Alignment:
Q  300 tgctttggaatctcttgtgtggttttgctatacactagcttagggctg-ttttgttgttgtcggcttggagaccatttgttctcattgattaccactatc 398  Q
    ||||||| | |||||| |||||| ||||| ||||||||  |||||||| |||||||||||| |  | ||| ||  ||| | ||| |||||||||||||||    
T  5674905 tgctttgtattctctt-tgtggtgttgctctacactagactagggctggttttgttgttgttgcttgggaaac--tttttactctttgattaccactatc 5675001  T
Q  399 acttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
      |||||||||||||| ||||||   |||||||||||||||| ||||||| ||||||||    
T  5675002 ttttgctccacacatctttgttt---tcattggtgtgagttttaaccggattcacaaca 5675057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 457
Target Start/End: Complemental strand, 31936470 - 31936398
Alignment:
Q  382 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    ||||||||||||||  |  |||||||||||||| |||||  |||||||||||||| ||| ||||||| ||||||||    
T  31936470 cattgattaccacttccttttgctccacacatctttgtt--tttcattggtgtga-ttttaaccggattcacaaca 31936398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 35152 - 35323
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| | |||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||||  ||||||||||||||||||||  ||    
T  35152 tgttttgttcttccttttaccgcttatcttgttt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgc 35250  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35251 ttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 35323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 3e-59; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 22173285 - 22173456
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| | |||||||||| |||| ||| |||||||| ||||||| ||||||||||||||||||||||  ||||||||||||||||||||  ||    
T  22173285 tgttttgttcttccttttaccgcttatcttattt-tgctttggtatctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgc 22173383  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22173384 ttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtga 22173456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 267 - 436
Target Start/End: Complemental strand, 18656423 - 18656256
Alignment:
Q  267 ttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggctt 365  Q
    |||||||||||||||||||| || ||||||||  ||||||  | ||||| |||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  18656423 ttttgttctttcctttaccgtttatcttgttt--gctttgttagctctttgtgtggtttttctatacactagcttagggctgttttgttgttgttagctt 18656326  T
Q  366 ggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  18656325 ggagaccatttgttctcattgattaccaccatcacttgctccacacatcattgtat-tttcattggtgtga 18656256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 265 - 459
Target Start/End: Complemental strand, 7167239 - 7167049
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| |||||   |||| ||||||||||||||||  ||||||| ||||||||||||| ||||||||  ||||||||||||||||||||  ||    
T  7167239 tgttttgttctt-cctttcttgcttatcttgtttatgctttgttatctctttgtgtggttttgctctacactagtctagggctgttttgttgttgt-tgc 7167142  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 459  Q
    ||||| ||||||| | ||||| ||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||| ||||||||||    
T  7167141 ttggaaaccattt-tgctcatagattaccactatctcttgctccacacatctttgtt--tttcattggtgtgagtttcaaccggattcacaacaga 7167049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 265 - 457
Target Start/End: Original strand, 2671688 - 2671876
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgtttt-gttgttgtcgg 362  Q
    |||||||||||| |||||   |||| |||||||| |||||||  ||||||| |||||||||| || ||||||||  |||||||||||| ||||||||  |    
T  2671688 tgttttgttctt-cctttcttgcttatcttgttt-tgctttgttatctctttgtgtggtttttctctacactagactagggctgtttttgttgttgtttg 2671785  T
Q  363 cttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    |||||||||||||||  ||||| ||||||||||||| ||||||||||||||| ||||   |||||||||||||||||| ||||||| ||||||||    
T  2671786 cttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgt---tttcattggtgtgagttttaaccggattcacaaca 2671876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 291 - 457
Target Start/End: Original strand, 28503982 - 28504145
Alignment:
Q  291 tcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggcttggagaccatttgttctcattgatt 389  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||||   |||||||||||||||||||  ||||||| ||||||| ||||||| ||||    
T  28503982 tcttgtttatgctttgttatctctttgtgtggttttgctatacactagtcaagggctgttttgttgttgt-tgcttggaaaccattt-ttctcatagatt 28504079  T
Q  390 accactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    | ||||| |  ||||||||||||||||||||   ||||||||||||||||   |||||| ||||||||    
T  28504080 atcactaccttttgctccacacatcattgtt--attcattggtgtgagttaagaccggattcacaaca 28504145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 316 - 436
Target Start/End: Original strand, 2677229 - 2677351
Alignment:
Q  316 gtgtggttttgctatacacta-gcttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatc 414  Q
    |||||||||||||||||| || ||||| |||||||||||||||||  |||||||| ||||||| |||||| ||||| | |||||||||||||||||||||    
T  2677229 gtgtggttttgctatacattaggctta-ggctgttttgttgttgttagcttggaggccatttgctctcatagattatctctatcacttgctccacacatc 2677327  T
Q  415 att-gtttatt-tcattggtgtga 436  Q
    ||| ||||||| ||||||||||||    
T  2677328 attggtttattctcattggtgtga 2677351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 316 - 436
Target Start/End: Original strand, 2673073 - 2673195
Alignment:
Q  316 gtgtggttttgctatacacta-gcttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatc 414  Q
    |||||||||||||||||| || ||||| |||||||||||||||||  |||||||| ||||||  |||||| ||||| | |||||||||||||||||||||    
T  2673073 gtgtggttttgctatacattaggctta-ggctgttttgttgttgttagcttggaggccatttactctcatagattatctctatcacttgctccacacatc 2673171  T
Q  415 att-gtttatt-tcattggtgtga 436  Q
    ||| ||||||| ||||||||||||    
T  2673172 attggtttattctcattggtgtga 2673195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 316 - 436
Target Start/End: Complemental strand, 10207877 - 10207755
Alignment:
Q  316 gtgtggttttgctatacactag-cttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatc 414  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||  |||||||| |||||||  ||||| ||||| | |||||||||||||||||||||    
T  10207877 gtgtggttttgctatacattaggcttagg-ctgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 10207779  T
Q  415 att-gtttatt-tcattggtgtga 436  Q
    ||| ||||||| ||||||||||||    
T  10207778 attggtttattctcattggtgtga 10207755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 343 - 436
Target Start/End: Complemental strand, 8512132 - 8512037
Alignment:
Q  343 ggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 436  Q
    |||||||||||||||||  |||||||  ||||||| |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8512132 ggctgttttgttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8512037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 343 - 436
Target Start/End: Complemental strand, 8517012 - 8516917
Alignment:
Q  343 ggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 436  Q
    |||||||||||||||||  |||||||  ||||||| |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8517012 ggctgttttgttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8516917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 316 - 410
Target Start/End: Complemental strand, 24968051 - 24967957
Alignment:
Q  316 gtgtggttttgctatacactag-cttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccaca 410  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||  |||||||| |||||||  ||||| ||||| | |||||||||||||||||    
T  24968051 gtgtggttttgctatacattaggcttagg-ctgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccaca 24967957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 348 - 457
Target Start/End: Original strand, 40372980 - 40373085
Alignment:
Q  348 ttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccgg 447  Q
    ||||| ||||||  ||||||| ||||||| | | ||||||||||||||||| ||||||||||||| | ||||   |||||||||||||||||| ||||||    
T  40372980 ttttgatgttgtttgcttggaaaccattt-tgcccattgattaccactatctcttgctccacacacctttgt---tttcattggtgtgagttttaaccgg 40373075  T
Q  448 aatcacaaca 457  Q
    | ||||||||    
T  40373076 attcacaaca 40373085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 457
Target Start/End: Original strand, 8739249 - 8739354
Alignment:
Q  348 ttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccgg 447  Q
    |||||||||| |  ||||||| ||||||||  ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| |||||||     
T  8739249 ttttgttgttatttgcttggaaaccatttga-ctcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccga 8739344  T
Q  448 aatcacaaca 457  Q
    | ||||||||    
T  8739345 attcacaaca 8739354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 457
Target Start/End: Original strand, 9091487 - 9091592
Alignment:
Q  348 ttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccgg 447  Q
    |||||||||| |  ||||||| ||||||||  ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| |||||||     
T  9091487 ttttgttgttatttgcttggaaaccatttga-ctcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccga 9091582  T
Q  448 aatcacaaca 457  Q
    | ||||||||    
T  9091583 attcacaaca 9091592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 384 - 458
Target Start/End: Complemental strand, 8477242 - 8477170
Alignment:
Q  384 ttgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttca-accggaatcacaacag 458  Q
    |||||||||||||||  |||||||||||||| ||||   |||||||||||||||||| | |||||| |||||||||    
T  8477242 ttgattaccactatcttttgctccacacatctttgt---tttcattggtgtgagttttataccggattcacaacag 8477170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 436
Target Start/End: Complemental strand, 32475402 - 32475306
Alignment:
Q  343 ggctgttttgttgttg-tcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 436  Q
    |||||||||||||||| |  | |||||| |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  32475402 ggctgttttgttgttgattagtttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 32475306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 436
Target Start/End: Complemental strand, 32480260 - 32480163
Alignment:
Q  343 ggctgttttgttgttg-tcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg--tttatt-tcattggtgtga 436  Q
    |||||||||||||||| |  | |||||| |||||||  ||||| ||||||| ||||| ||||||||||||||| |||  |||||| ||||||||||||    
T  32480260 ggctgttttgttgttgattagtttggaggccatttgcactcatagattacctctatctcttgctccacacatctttggatttattctcattggtgtga 32480163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 2e-57; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 291 - 458
Target Start/End: Original strand, 1457277 - 1457446
Alignment:
Q  291 tcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggcttggagaccatttgttctcattgatt 389  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||||  |||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  1457277 tcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgatt 1457376  T
Q  390 accactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 458  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  1457377 accactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaacag 1457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 265 - 436
Target Start/End: Complemental strand, 15044681 - 15044512
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctcttgtgtggttttgctatacactagcttagggctgttttgttgttgtcggct 364  Q
    |||||||||||| | |||   |||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| || |    
T  15044681 tgttttgttcttccttttcttgcttatcttgtttatgctttggaatctcttgtgtggttttgctatacactagtctagggctgttttgttgttgttggtt 15044582  T
Q  365 tggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 436  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||||||||||||    
T  15044581 tggagaccatttgttctcattgattaccactatcacttgctctacacgtcattg--tatttcattggtgtga 15044512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 265 - 457
Target Start/End: Complemental strand, 27444965 - 27444771
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| | |||| | ||| ||||||||||||||||  ||||||| ||||||||||||||||||||||  |||||||| | |||||||||  ||    
T  27444965 tgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctatgttgttgtttgc 27444866  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 457  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||    
T  27444865 ttggagaccatttgtactcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaaca 27444771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 265 - 457
Target Start/End: Complemental strand, 43592274 - 43592080
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| | |||| | ||| ||||||||||||||||  ||||||| ||||||||||||||||||||||  |||||||| |||||||||||  ||    
T  43592274 tgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgc 43592175  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 457  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||  ||||||| ||||||||    
T  43592174 ttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttcattgatgtgactttggaaccggattcacaaca 43592080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 265 - 457
Target Start/End: Complemental strand, 43598719 - 43598525
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| | |||| | ||| ||||||||||||||||  ||||||| ||||||||||||||||||||||  |||||||| |||||||||||  ||    
T  43598719 tgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgc 43598620  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 457  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  43598619 ttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaaca 43598525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 265 - 457
Target Start/End: Complemental strand, 43604211 - 43604017
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| | |||| | ||| ||||||||||||||||  ||||||| ||||||||||||||||||||||  |||||||| |||||||||||  ||    
T  43604211 tgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgc 43604112  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 457  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  43604111 ttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaaca 43604017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 265 - 457
Target Start/End: Complemental strand, 43609703 - 43609509
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| | |||| | ||| ||||||||||||||||  ||||||| ||||||||||||||||||||||  |||||||| |||||||||||  ||    
T  43609703 tgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgc 43609604  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 457  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  43609603 ttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaaca 43609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 265 - 457
Target Start/End: Complemental strand, 27449809 - 27449615
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||| | |||| | ||| ||||||||||||||||  ||||||| ||||||||||||||||||||||  |||||||| | |||||||||  ||    
T  27449809 tgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctatgttgttgtttgc 27449710  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 457  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||||    
T  27449709 ttggagaccatttgtactcattgattaccactatctcttgctccacatatcattgtttatttcattggtgtgagtttggaaccggattcacaaca 27449615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 291 - 440
Target Start/End: Complemental strand, 30631376 - 30631227
Alignment:
Q  291 tcttgtttatgctttggaatctct-tgtgtggttttgctatacactagcttagggctgttttgttgttgtcggcttggagaccatttgttctcattgatt 389  Q
    ||||||||||||||||  |||| | | |||| ||||||||||||||||  |||||||||||||||||||| | |||| | ||||||||||||||| ||||    
T  30631376 tcttgtttatgctttgttatctatatatgtgattttgctatacactagtctagggctgttttgttgttgttg-cttgaaaaccatttgttctcatagatt 30631278  T
Q  390 accactatcacttgctccacacatcattgtttatttcattggtgtgagttt 440  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  30631277 accactatctcttgctccacacatcattgtttatttcatttgtgtgagttt 30631227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 28807663 - 28807837
Alignment:
Q  265 tgttttgttctttccttt-accgcttgtcttgtttatgctttggaatctctt-gtgtggtttt--gctatacactagcttagggctgttttgttgttgtc 360  Q
    |||||||||||||||||| |||| || |||||||||||||| |  | ||||| | ||||||||  ||||||||||||||||||||||||| ||||||||     
T  28807663 tgttttgttctttccttttaccgtttatcttgtttatgctt-gttagctctttgagtggttttttgctatacactagcttagggctgttt-gttgttgtt 28807760  T
Q  361 ggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
     |||||||  |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  28807761 tgcttggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 28807837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 37556713 - 37556887
Alignment:
Q  265 tgttttgttctttcc-tttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactag-cttagggctgttttgttgttgtcg 361  Q
    ||||||||||||||| ||||||| || |||||||||||||| |  | ||||| ||||||||||||||||||| || | |||| |||||||||||||||      
T  37556713 tgttttgttctttccatttaccgtttatcttgtttatgctt-gttagctcttagtgtggttttgctatacacaagtcatagg-ctgttttgttgttgtta 37556810  T
Q  362 gcttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 436  Q
    |||||||| ||||||| |||||| ||||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37556811 gcttggaggccatttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtga 37556887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 37561535 - 37561709
Alignment:
Q  265 tgttttgttctttcc-tttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactag-cttagggctgttttgttgttgtcg 361  Q
    ||||||||||||||| ||||||| || |||||||||||||| |  | ||||| ||||||||||||||||||| || | |||| |||||||||||||||      
T  37561535 tgttttgttctttccatttaccgtttatcttgtttatgctt-gttagctcttagtgtggttttgctatacacaagtcatagg-ctgttttgttgttgtta 37561632  T
Q  362 gcttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 436  Q
    |||||||| ||||||| |||||| ||||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37561633 gcttggaggccatttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtga 37561709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 316 - 436
Target Start/End: Complemental strand, 2785319 - 2785197
Alignment:
Q  316 gtgtggttttgctatacactag-cttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatc 414  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||  |||||||| |||||||  ||||| ||||| | |||||||||||||||||||||    
T  2785319 gtgtggttttgctatacattaggcttagg-ctgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 2785221  T
Q  415 att-gtttatt-tcattggtgtga 436  Q
    ||| ||||||| ||||||||||||    
T  2785220 attggtttattctcattggtgtga 2785197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 316 - 436
Target Start/End: Original strand, 31401991 - 31402113
Alignment:
Q  316 gtgtggttttgctatacacta-gcttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatc 414  Q
    ||||||||||||| |||| || ||||| |||||||||||||||||  |||||||| |||||||  ||||| ||||| | |||||||||||||||||||||    
T  31401991 gtgtggttttgctttacattaggctta-ggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 31402089  T
Q  415 attg-tttatt-tcattggtgtga 436  Q
    |||| |||||| ||||||||||||    
T  31402090 attgatttattctcattggtgtga 31402113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 317 - 418
Target Start/End: Complemental strand, 33791259 - 33791158
Alignment:
Q  317 tgtggttttgctatacactag-cttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatca 415  Q
    ||||||||||||||||| ||| |||||| |||||||||||||||  |||||||| |||||||  ||||| ||||| | ||||||||||||||||||||||    
T  33791259 tgtggttttgctatacattaggcttagg-ctgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 33791161  T
Q  416 ttg 418  Q
    |||    
T  33791160 ttg 33791158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 316 - 436
Target Start/End: Original strand, 31397134 - 31397256
Alignment:
Q  316 gtgtggttttgctatacactag-cttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatc 414  Q
    ||||||||||||| |||| ||| ||||||  ||||||||||||||  |||||||| |||||||  ||||| ||||| | |||||||||||||||||||||    
T  31397134 gtgtggttttgctttacattaggcttagga-tgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 31397232  T
Q  415 attg-tttatt-tcattggtgtga 436  Q
    |||| |||||| ||||||||||||    
T  31397233 attgatttattctcattggtgtga 31397256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 317 - 418
Target Start/End: Complemental strand, 33768122 - 33768021
Alignment:
Q  317 tgtggttttgctatacactag-cttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatca 415  Q
    ||||||||||||||||| ||| |||||| |||||||||||||||  ||||||||  ||||||  ||||| ||||| | ||||||||||||||||||||||    
T  33768122 tgtggttttgctatacattaggcttagg-ctgttttgttgttgttagcttggaggtcatttgcactcatagattatctctatcacttgctccacacatca 33768024  T
Q  416 ttg 418  Q
    |||    
T  33768023 ttg 33768021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 300 - 457
Target Start/End: Complemental strand, 38192135 - 38191983
Alignment:
Q  300 tgctttggaatctcttgtgtggttttgctatacactagcttagggctgtttt-gttgttgtcggcttggagaccatttgttctcattgattaccactatc 398  Q
    ||||||| | ||||||||||||| ||||| ||||||||  |||||||||||| |||||||| | |||||||||  |||   | ||| ||||||||||  |    
T  38192135 tgctttgtattctcttgtgtggtgttgctctacactagtctagggctgtttttgttgttgttg-cttggagacacttta--cacatagattaccacttcc 38192039  T
Q  399 acttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
      |||||||||||||| |||||||   ||||||||||||||||||||||| ||||||||    
T  38192038 ttttgctccacacatctttgttta---cattggtgtgagtttcaaccggattcacaaca 38191983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 300 - 457
Target Start/End: Complemental strand, 38219360 - 38219208
Alignment:
Q  300 tgctttggaatctcttgtgtggttttgctatacactagcttagggctgtttt-gttgttgtcggcttggagaccatttgttctcattgattaccactatc 398  Q
    ||||||| | ||||||||||||| ||||| ||||||||  |||||||||||| |||||||| | |||||||||  |||   | ||| ||||||||||  |    
T  38219360 tgctttgtattctcttgtgtggtgttgctctacactagtctagggctgtttttgttgttgttg-cttggagacacttta--cacatagattaccacttcc 38219264  T
Q  399 acttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
      |||||||||||||| |||||||   ||||||||||||||||||||||| ||||||||    
T  38219263 ttttgctccacacatctttgttta---cattggtgtgagtttcaaccggattcacaaca 38219208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 392 - 457
Target Start/End: Complemental strand, 31180142 - 31180079
Alignment:
Q  392 cactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||    
T  31180142 cactatctcttgctccacacatcattgtta--ttcattggtgtgagtttcaaccggattcacaaca 31180079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 457
Target Start/End: Complemental strand, 24135794 - 24135659
Alignment:
Q  317 tgtggttttgctatacactagcttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcat 416  Q
    |||||| ||||| ||||||||  ||||||||||||||||||||  ||||||||||  | | | ||||| ||||||||||  |  |||||||||||||| |    
T  24135794 tgtggtgttgctctacactagtctagggctgttttgttgttgtttgcttggagac--tctttactcatagattaccactcccttttgctccacacatctt 24135697  T
Q  417 tgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    | |   |||||||||||||||||| | ||||| ||||||||    
T  24135696 tat---tttcattggtgtgagttttatccggattcacaaca 24135659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 31180184 - 31180138
Alignment:
Q  291 tcttgtttatgctttggaatctctt-gtgtggttttgctatacacta 336  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||||    
T  31180184 tcttgtttatgctttgttatctctttgtgtggttttgctatacacta 31180138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 457
Target Start/End: Complemental strand, 35387527 - 35387474
Alignment:
Q  401 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  35387527 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 35387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 9732 - 9902
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctcttgtgtggttttgctatacactagcttagggctgttttgttgttgtcggct 364  Q
    |||||||||||| |||||   |||| |||||||||||||| |  | ||||||||||||||||||||| |||||||||||||||||||||||||||  | |    
T  9732 tgttttgttctt-cctttcttgcttatcttgtttatgctt-gttagctcttgtgtggttttgctatatactagcttagggctgttttgttgttgtttggt 9829  T
Q  365 tggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  9830 tggagaccatttgctctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 9902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 316 - 436
Target Start/End: Original strand, 28 - 143
Alignment:
Q  316 gtgtggttttgctatacactagcttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||      |||||||||||||||||||||    
T  28 gtgtggttttgctatacactagcttagggctgttttgttgttgtttacttggagaccatttgctctcattgat------tatcacttgctccacacatca 121  T
Q  416 tt-gtttatttcattggtgtga 436  Q
    || |||||||| ||||||||||    
T  122 ttggtttatttaattggtgtga 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 44023964 - 44024135
Alignment:
Q  265 tgttttgttctttcctttaccgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcggc 363  Q
    |||||||||||||||||||||  || |||||||||||||| |  | ||||| ||||||||||||||||||||||||||||||||||| ||||||||  ||    
T  44023964 tgttttgttctttcctttaccatttatcttgtttatgctt-gttagctctttgtgtggttttgctatacactagcttagggctgttt-gttgttgtttgc 44024061  T
Q  364 ttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    |||||  |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||    
T  44024062 ttggaagccatttgttctcattgattatcactatcagttgctccacacatcattggtttatttcattggtgtga 44024135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 265 - 436
Target Start/End: Complemental strand, 39445494 - 39445322
Alignment:
Q  265 tgttttgttctttccttt-accgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcgg 362  Q
    |||||||||||||||||| |||| || |||||||||||||| |  | ||||| ||||||||||||||||||||||||||||||||||| ||||||||  |    
T  39445494 tgttttgttctttccttttaccgtttatcttgtttatgctt-gttagctctttgtgtggttttgctatacactagcttagggctgttt-gttgttgtttg 39445397  T
Q  363 cttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    ||||||  |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  39445396 cttggaagccatttgttcacattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 39445322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 1055102 - 1055274
Alignment:
Q  265 tgttttgttctttccttt-accgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcgg 362  Q
    |||||||||||||||||| |||| || |||||||||||||| |  | ||||| ||||||||||||||||||||||||||||||||||| ||||||||  |    
T  1055102 tgttttgttctttccttttaccgtttatcttgtttatgctt-gttagctctttgtgtggttttgctatacactagcttagggctgttt-gttgttgtaag 1055199  T
Q  363 cttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    ||||||   ||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  1055200 cttggaagacatttgttcacattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 1055274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 265 - 436
Target Start/End: Original strand, 25445180 - 25445352
Alignment:
Q  265 tgttttgttctttccttt-accgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcgg 362  Q
    |||||||||||||||||| |||| || ||||||||| |||| |  | ||||| ||||||||||||||||||||||||||||||||||| ||||||||  |    
T  25445180 tgttttgttctttccttttaccgtttatcttgtttacgctt-gttagctctttgtgtggttttgctatacactagcttagggctgttt-gttgttgtttg 25445277  T
Q  363 cttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    ||||||  |||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  25445278 cttggaagccatttgttctcattgattatcactatcgcttgctccacacatcattggtttatttcattggtgtga 25445352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 291 - 436
Target Start/End: Complemental strand, 41398211 - 41398060
Alignment:
Q  291 tcttgtttatgctttggaatctctt-gtgtggtttt--gctatacactagcttagggctgttttgttgttgtcg---gcttggagaccatttgttctcat 384  Q
    ||||||||||||||||| ||||||| ||||||||||  |||||||||||| ||||||||||||||||||||| |   ||||||||||||| |||||||||    
T  41398211 tcttgtttatgctttggtatctctttgtgtggttttttgctatacactag-ttagggctgttttgttgttgttgtttgcttggagaccatatgttctcat 41398113  T
Q  385 tgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    |||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  41398112 tgattatcactatcacttgctccacacataattggtttatttcattggtgtga 41398060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 362 - 436
Target Start/End: Complemental strand, 41386646 - 41386571
Alignment:
Q  362 gcttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  41386646 gcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 41386571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 317 - 457
Target Start/End: Original strand, 24202919 - 24203054
Alignment:
Q  317 tgtggttttgctatacactagcttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcat 416  Q
    |||||| ||||| |||||||| |||||||||||||||||||||  ||||||||||  ||  | | ||| ||||||||||  |  |||||||||||||| |    
T  24202919 tgtggtgttgctctacactagtttagggctgttttgttgttgtttgcttggagacactt--tacacatagattaccactcccttttgctccacacatctt 24203016  T
Q  417 tgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    |||   |||||||||||||||||| ||||||| ||||||||    
T  24203017 tgt---tttcattggtgtgagttttaaccggattcacaaca 24203054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 316 - 418
Target Start/End: Original strand, 43988607 - 43988709
Alignment:
Q  316 gtgtggttttgctatacactag-cttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatc 414  Q
    |||||||| ||||||||| ||| |||||| |||||||||||||||  |||||||  ||||||| |||||| ||||| | |||||||||||||||||||||    
T  43988607 gtgtggttgtgctatacattaggcttagg-ctgttttgttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatc 43988705  T
Q  415 attg 418  Q
    ||||    
T  43988706 attg 43988709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 314 - 421
Target Start/End: Original strand, 24787514 - 24787624
Alignment:
Q  314 ttgtgtggttttgctatacactagcttagggctgtttt--gttgttgtcg--gcttggagaccatttgttctcattgattaccactatcacttgctccac 409  Q
    ||||||||||||||| ||||  ||  ||||||||||||  |||||||| |  ||||||| ||||||| | |||||| |||||||||||| ||||||||||    
T  24787514 ttgtgtggttttgctctacataagtctagggctgttttttgttgttgttgttgcttggaaaccattt-tgctcatttattaccactatctcttgctccac 24787612  T
Q  410 acatcattgttt 421  Q
    ||||| ||||||    
T  24787613 acatctttgttt 24787624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 41390556 - 41390486
Alignment:
Q  291 tcttgtttatgctttggaatctctt-gtgtggtttt--gctatacactagcttagggctgttttgttgttgt 359  Q
    ||||||||||||||||  ||||||| ||||||||||  |||||||||||| |||||||||||||||||||||    
T  41390556 tcttgtttatgctttgatatctctttgtgtggttttttgctatacactag-ttagggctgttttgttgttgt 41390486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 19359079 - 19359132
Alignment:
Q  401 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  19359079 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 19359132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 265 - 436
Target Start/End: Complemental strand, 357 - 185
Alignment:
Q  265 tgttttgttctttccttt-accgcttgtcttgtttatgctttggaatctctt-gtgtggttttgctatacactagcttagggctgttttgttgttgtcgg 362  Q
    |||||||||||||||||| |||| || |||||||||||||| |  | ||||| ||||||||||||||||||||||||||||||||||| ||||||||  |    
T  357 tgttttgttctttccttttaccgtttatcttgtttatgctt-gttagctctttgtgtggttttgctatacactagcttagggctgttt-gttgttgtttg 260  T
Q  363 cttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    ||||||  |||||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||||||||||    
T  259 cttggaagccatttgttctcattgattatcaccatcacttgctccacacatctttggtttatttcattggtgtga 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 362 - 436
Target Start/End: Original strand, 34136 - 34211
Alignment:
Q  362 gcttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  34136 gcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 34211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 316 - 436
Target Start/End: Original strand, 19306 - 19428
Alignment:
Q  316 gtgtggttttgctatacacta-gcttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatc 414  Q
    |||||||||||||||||| || ||||| |||||||||||||||||  |||||||| |||||||  ||||| ||||| | |||||||||||||||||||||    
T  19306 gtgtggttttgctatacattaggctta-ggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 19404  T
Q  415 attg-tttatt-tcattggtgtga 436  Q
    |||| |||||| ||||||||||||    
T  19405 attgatttattctcattggtgtga 19428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 436
Target Start/End: Original strand, 14477 - 14573
Alignment:
Q  343 ggctgttttgttgttg-tcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 436  Q
    |||||||||||||||| |  |||||||| |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  14477 ggctgttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 14573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 316 - 436
Target Start/End: Original strand, 149097 - 149219
Alignment:
Q  316 gtgtggttttgctatacacta-gcttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatc 414  Q
    |||||||||||||||||| || ||||| |||||||||||||||||  |||||||| |||||||  ||||| ||||| | |||||||||||||||||||||    
T  149097 gtgtggttttgctatacattaggctta-ggctgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 149195  T
Q  415 attg-tttatt-tcattggtgtga 436  Q
    |||| |||||| ||||||||||||    
T  149196 attgatttattctcattggtgtga 149219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 314 - 458
Target Start/End: Original strand, 386 - 528
Alignment:
Q  314 ttgtgtggttttgctatacactagcttagggctgttttgttgttgtcg--gcttggagaccatttgttctcattgattaccactatcacttgctccacac 411  Q
    |||||||||||||||   |||||| ||||||||||||| ||||||| |  ||||||| ||||||| | ||||| ||||||||||||| ||||||||||||    
T  386 ttgtgtggttttgctcctcactagtttagggctgtttt-ttgttgttgttgcttggaaaccatttttgctcatagattaccactatctcttgctccacac 484  T
Q  412 atcattgtttatttcattggtgtgagtttcaaccggaatcacaacag 458  Q
    ||| ||||   |||||||||||||||||| ||  ||| |||||||||    
T  485 atctttgt---tttcattggtgtgagttttaaatggattcacaacag 528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 316 - 436
Target Start/End: Original strand, 2392 - 2514
Alignment:
Q  316 gtgtggttttgctatacacta-gcttagggctgttttgttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatc 414  Q
    |||||||||||||||||| || ||||| |||||||||||||||||  |||||||| |||||||  ||||| ||||| |  ||||||||||||||||||||    
T  2392 gtgtggttttgctatacattaggctta-ggctgttttgttgttgttagcttggaggccatttgcactcatggattatctttatcacttgctccacacatc 2490  T
Q  415 attg-tttatt-tcattggtgtga 436  Q
    |||| |||||| ||||||||||||    
T  2491 attgatttattctcattggtgtga 2514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1333 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold1333
Description:

Target: scaffold1333; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 467 - 562
Alignment:
Q  19 ttcattcccgtcttctacctaactaaccacttccattctcaagga-ttcaatcggggctctcgttaaacattactatgaccctaataagacttaat 113  Q
    |||||| || ||||||| |||||| |||||   |||||||||||  |||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  467 ttcatttccttcttctagctaacttaccacactcattctcaaggtgttcaatcggggctctcattaaacattactacgaccctaataagacttaat 562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 13233 - 13171
Alignment:
Q  375 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 436  Q
    |||||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||    
T  13233 ttgttctcattgattatcactatcacttgctccacatatctttggtttatttcattggtgtga 13171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 436
Target Start/End: Original strand, 182132 - 182228
Alignment:
Q  343 ggctgttttgttgttg-tcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 436  Q
    |||||||||||||||| |  |||||||| |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  182132 ggctgttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 182228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 457
Target Start/End: Original strand, 44111 - 44247
Alignment:
Q  317 tgtggttttgctatacactagcttagggctgtttt-gttgttgtcggcttggagaccatttgttctcattgattaccactatcacttgctccacacatca 415  Q
    |||||| ||||| |||||||| ||||| ||||||| |||||||| | |||||||||  |||   | |||||||||||||| ||  ||||||||||||||     
T  44111 tgtggtgttgctctacactagattaggtctgtttttgttgttgttg-cttggagacacttta--cacattgattaccact-tcctttgctccacacatct 44206  T
Q  416 ttgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 457  Q
    ||||||  ||||||||||||| | |||||||||| ||||||||    
T  44207 ttgttt--ttcattggtgtgattatcaaccggaactcacaaca 44247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 24278 - 24331
Alignment:
Q  401 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 457  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  24278 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 24331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University