View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_50 (Length: 267)
Name: NF20706_low_50
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 43677861 - 43678119
Alignment:
| Q |
18 |
aagaataaccatgttgctgatacatgggatcataatgaggggcatacataggatcgtaattattgtactgataataaggcattggtggag---------- |
107 |
Q |
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| T |
43677861 |
aagaataaccatgttgctgatacatgggatcataatgaggggcatacataggatcgtaattattgtactgataataaggcattggtggaggaggaggagg |
43677960 |
T |
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| Q |
108 |
--------gagggtagtatcctccttgatactgtggataagcagaagaagacataggcatatccatatttgtatttgcataattgttgccttccatacta |
199 |
Q |
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| T |
43677961 |
aggaggaggagggtagtatcctccttgatactgtggataagcagaagaagacataggcatatccatatttgtatttgcataattgttgccttccatacta |
43678060 |
T |
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| Q |
200 |
ttaatccagcaaagctccactttctttccatgtttaccagccatctttataatattctt |
258 |
Q |
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| T |
43678061 |
ttaatccagcaaagctccactttctttccatgtttaccagccatctttataattttctt |
43678119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 43579873 - 43579814
Alignment:
| Q |
175 |
tgcataattgttgccttccatactattaatccagcaaagctccactttctttccatgttt |
234 |
Q |
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| T |
43579873 |
tgcataactgttgccttccttactattaatccagcaaagcttcactttctttccatgttt |
43579814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 43579963 - 43579904
Alignment:
| Q |
52 |
atgaggggcatacataggatcgtaattattgtactgataataaggcattggtggaggagg |
111 |
Q |
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| T |
43579963 |
atgaggggcgtacatgggatcataactattgtaccgataatagggcatcggtggaggagg |
43579904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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