View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_54 (Length: 255)
Name: NF20706_low_54
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 19754362 - 19754600
Alignment:
| Q |
1 |
ctcatttttgagcttgttgagattagtcttcgaatgagccaatttagcatcaagaaggtctccttcggtttttagttttgctatttcagcatttttccgc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19754362 |
ctcagttttgagcttgttgagattagtcttcgaatgagccaatttagcatcaagaaggtctccttcagtttttagttttgctatttcagcatttttccgc |
19754461 |
T |
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| Q |
101 |
tttgaaatttcgaccttcctgatggtaagatttgcttcctttttaagccgttcatctttttccaaaagggatttcttgttcgacttcaattcttgaattg |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19754462 |
tttgaatcttcgaccttcctgatggtaagatttgcttcctttttaagccgttcatctttttccaaaagggatttcttgttcgacttcaattcttgaattg |
19754561 |
T |
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| Q |
201 |
ccttttcatattcggaaatggcaaggtcgtactcctcca |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
19754562 |
ccttttcatattcggaaatggcaaggtcgtactcctcca |
19754600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 22526453 - 22526691
Alignment:
| Q |
9 |
tgagcttgttgagattagtcttcgaatgagccaatttagcatcaagaaggtctccttcggtttttagttttgctatttcagcatttttccgctttgaaat |
108 |
Q |
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|||||||||||||||| | |||||||||| | | || |||||||||||| |||||| | | | |||||||| ||||||||| ||| || | | |
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| T |
22526453 |
tgagcttgttgagatttgccttcgaatgatctagcttgttatcaagaaggtccccttcgctggtcaattttgctacctcagcatttagccgtttggcatc |
22526552 |
T |
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| Q |
109 |
ttcgaccttcctgatggtaagatttgcttcctttttaagccgttcatctttttccaaaagggatttcttgttcgacttcaattcttgaattgccttttca |
208 |
Q |
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|||||||||| |||||||||||| ||||||||| |||| | ||||| ||||||||| |||||||| |||||||||||||||| |||||||||||||||| |
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| T |
22526553 |
ttcgaccttcttgatggtaagatatgcttccttcctaagactttcatatttttccaagagggattttttgttcgacttcaatttttgaattgccttttca |
22526652 |
T |
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| Q |
209 |
tattcggaaatggcaaggtcgtactcctccatattcttc |
247 |
Q |
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| |||| ||||||||||||||||||| ||||| |||||| |
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| T |
22526653 |
tgttcgaaaatggcaaggtcgtactcttccattttcttc |
22526691 |
T |
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