View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_57 (Length: 253)
Name: NF20706_low_57
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 5799335 - 5799576
Alignment:
| Q |
3 |
tggtcggtgatgcggtgataggagacttcaggaacagatatgagtcctgagtccttgaggacaaagtcgccaaaagctcgtgacatagctaggccaggtg |
102 |
Q |
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| T |
5799335 |
tggtcggtgatgcggtgataggagacttcaggaacagatatgagtcctgagtccttgaggacaaagtcgccaaaagctcgtgacatagctaggccaggtg |
5799434 |
T |
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| Q |
103 |
aatcagcattgggaagccaaagtcgaggaactgctgaatcgttgtctagggcaaacacccttcctttacaaatccttatcctcgttgcttctcctaatta |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5799435 |
aatcagcattgggaagccaaagtcgaggaactgctgaatcgttgtctagggcaaacacccttcctttacaaatccttatcctcgttgcttctcctaatta |
5799534 |
T |
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| Q |
203 |
acgcacaagcacaataatcatgaataagattaaactctctgc |
244 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5799535 |
acgcacaagcacaataatcatgaataagattaaactccctgc |
5799576 |
T |
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