View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_6 (Length: 593)
Name: NF20706_low_6
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 31 - 575
Target Start/End: Original strand, 50712964 - 50713508
Alignment:
| Q |
31 |
tcaactattactgaaaaaactcaatatgaaattacccttttgctagcagctatagcatttggacaagaatttcttcttttccatcttcattcaagaagtc |
130 |
Q |
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| T |
50712964 |
tcaactattactgaaaaaactcaatatgaaattacccttttgctagcagctatagcatttggacaagaatttcttcttttccatcttcattcaagaagtc |
50713063 |
T |
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| Q |
131 |
acatggggatagaaggacaataccattattgtttgcaagttttgattatgataggttttgttacaacccttatgggaattggttttccaaagagtttttt |
230 |
Q |
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| T |
50713064 |
acatggggatagaaggacaataccattattgtttgcaagttttgattatgataggtttttttacaacccttatgggaattggttttccaaagagtttttt |
50713163 |
T |
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| Q |
231 |
ggtatgttttcttcgttctgttagcatgatcttccaaggtttgttcattatgttcatgggtttagtgctttctagacctggttatcaacccaaaggttgc |
330 |
Q |
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| T |
50713164 |
ggtatgttttcttcgttctgttagcatgatcttccaaggtttgttcattatgttcatgggtttagtgctttctagacctggttatcaacccaaaggttgc |
50713263 |
T |
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| Q |
331 |
ttcttggaatatgaaggggatcaacttatgattaggtgcaatgatgaaaaggctatgcatcgtgctatttcattggtgaatcttcaattcagctggttct |
430 |
Q |
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| T |
50713264 |
ttcttggaatatgaaggggatcaacttatgattaggtgcaatgatgaaaaggctatgcatcgtgctatttcattggtgaatcttcaattcagctggttct |
50713363 |
T |
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| Q |
431 |
ttattggagtcactatttttgcagtgtctttctacttgattatggctataatttatggtgaaaaagtggagtgtcattcactgatgaaggaggaacacta |
530 |
Q |
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| T |
50713364 |
ttattggaatcactatttttgtagtgtctttctacttgattatggctataatttatggtgaaaaagtggagtgtgattcactgatgaaggaggaacacta |
50713463 |
T |
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| Q |
531 |
cggtgaagacgatggctcaaaaaatttcgatgttgagtcacatat |
575 |
Q |
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| T |
50713464 |
cggtgaagacgatggctcaaaaaatttcgatgttgagtcacatat |
50713508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 46 - 569
Target Start/End: Original strand, 50718260 - 50718783
Alignment:
| Q |
46 |
aaaactcaatatgaaattacccttttgctagcagctatagcatttggacaagaatttcttcttttccatcttcattcaagaagtcacatggggatagaag |
145 |
Q |
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| T |
50718260 |
aaaagtcaaaatgaaattacccatttgctagcagcaatagcatttgcacaacaatttcttcttattcatctccattcaagggatcacatgggtatagaag |
50718359 |
T |
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| Q |
146 |
gacaataccattattgtttgcaagttttgattatgataggttttgttacaacccttatgggaattggttttccaaagagttttttggtatgttttcttcg |
245 |
Q |
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| T |
50718360 |
gacaatatcattatttactacaagttttgatttcgatttgttttgtgacaacccttatgggaattggttatccaatgagcttcttggtgagttttgtgcg |
50718459 |
T |
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| Q |
246 |
ttctgttagcatgatcttccaaggtttgttcattatgttcatgggtttagtgctttctagacctggttatcaacccaaaggttgcttcttggaatatgaa |
345 |
Q |
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| T |
50718460 |
atctgttagcataaccttccaaggtttgtggcttatgttcatggggctcatgctttttacacctggttttgaaccgaaaggttgctttacgaaacttgag |
50718559 |
T |
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| Q |
346 |
ggggatcaacttatgattaggtgcaatgatgaaaaggctatgcatcgtgctatttcattggtgaatcttcaattcagctggttctttattggagtcacta |
445 |
Q |
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| T |
50718560 |
ggagatcaatatgttgttaagtgcagtgatgaaaaggctcttcatcgtgctgtttcattggtgaatcttcaattcagctggttcttgattggagtcactg |
50718659 |
T |
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| Q |
446 |
tttttgcagtgtctttctacttgattatggctataatttatggtgaaaaagtggagtgtcattcac---tgatgaaggaggaacactacggtgaagacga |
542 |
Q |
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| T |
50718660 |
tttttgctgtgtctttctacttgattatggctataagttatggcgaaaaagtaaagtatgtttcactgatgatgaaggaggaacattatcgtgaa---ga |
50718756 |
T |
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| Q |
543 |
tggctcaaaaaatttcgatgttgagtc |
569 |
Q |
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| T |
50718757 |
tggcttaaaaaatttacatgttgagtc |
50718783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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