View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_60 (Length: 251)
Name: NF20706_low_60
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 42272533 - 42272774
Alignment:
| Q |
1 |
acattctcgtctttgatcttggaggtggaacttttgatgtcagtatcttgacaattgataacggtgtttttgaggttcttgctacaaacggagatactca |
100 |
Q |
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| T |
42272533 |
acattctcgtctttgatcttggaggtggaacttttgatgtcagtatcttgacaattgataacggtgtttttgaggttcttgctacaaacggagatactca |
42272632 |
T |
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| Q |
101 |
tcttggaggtgagtacttataatagaaagaatattatgaaattatgaaattttatactttgcttaaaactttccttctagtattaatgcatgctaattct |
200 |
Q |
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| T |
42272633 |
tcttggaggtgagtacttataatagaaagaatattatgaaattatgaaattttatactttgcttaaaactttccttctagtattaatgcatgctaattct |
42272732 |
T |
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| Q |
201 |
ctaccattctttgccaggtgaggactttgatcagagaataat |
242 |
Q |
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| T |
42272733 |
ctaccattctttgccaggtgaggactttgatcagagaataat |
42272774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 42324656 - 42324776
Alignment:
| Q |
1 |
acattctcgtctttgatcttggaggtggaacttttgatgtcagtatcttgacaattgataacggtgtttttgaggttcttgctacaaacggagatactca |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||| |||||||| || |
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| T |
42324656 |
acattcttgtctttgatcttggaggtggaacttttgatgtcagtatcttgacaattgacaatggtgtttttgaggttctttctacaaatggagataccca |
42324755 |
T |
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| Q |
101 |
tcttggaggtgagtacttata |
121 |
Q |
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| T |
42324756 |
tcttggaggtgagtacttata |
42324776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 42324865 - 42324893
Alignment:
| Q |
214 |
ccaggtgaggactttgatcagagaataat |
242 |
Q |
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| T |
42324865 |
ccaggtgaggactttgatcagagaataat |
42324893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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