View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20706_low_62 (Length: 247)

Name: NF20706_low_62
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20706_low_62
NF20706_low_62
[»] chr4 (12 HSPs)
chr4 (156-228)||(50250605-50250677)
chr4 (156-228)||(50669237-50669309)
chr4 (177-218)||(48852849-48852890)
chr4 (177-221)||(48903120-48903164)
chr4 (190-229)||(7773696-7773735)
chr4 (177-228)||(48705237-48705288)
chr4 (191-229)||(7771552-7771590)
chr4 (191-229)||(7790237-7790275)
chr4 (158-212)||(49040984-49041038)
chr4 (188-221)||(48898893-48898926)
chr4 (188-221)||(49044055-49044088)
chr4 (156-212)||(48863421-48863477)
[»] chr1 (3 HSPs)
chr1 (13-64)||(47522109-47522160)
chr1 (89-137)||(47522179-47522227)
chr1 (156-221)||(24367327-24367392)
[»] chr6 (2 HSPs)
chr6 (156-230)||(21979465-21979539)
chr6 (176-218)||(21015992-21016034)
[»] chr8 (3 HSPs)
chr8 (183-220)||(12195484-12195521)
chr8 (183-220)||(12439912-12439949)
chr8 (188-222)||(15349038-15349072)
[»] chr7 (1 HSPs)
chr7 (177-228)||(48883984-48884036)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 50250605 - 50250677
Alignment:
Q  156 ggcaacaataacatagaccaataaatcataaggaaaagccaaccaatgaatagccccattaaagagaacccct 228  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  50250605 ggcaacaataacatagaccaataaatcataacgaaaagccaaccaatgaatagccccattaaagagaacccct 50250677  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 50669309 - 50669237
Alignment:
Q  156 ggcaacaataacatagaccaataaatcataaggaaaagccaaccaatgaatagccccattaaagagaacccct 228  Q
    ||||||||| ||| | |||  |||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  50669309 ggcaacaatgacaaacacctttaaatcataacgaaaagccaaccaataaatagcctcattaaagagaacccct 50669237  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 48852890 - 48852849
Alignment:
Q  177 taaatcataaggaaaagccaaccaatgaatagccccattaaa 218  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  48852890 taaatcatgacgaaaagccaaccaatgaatagccccattaaa 48852849  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 48903164 - 48903120
Alignment:
Q  177 taaatcataaggaaaagccaaccaatgaatagccccattaaagag 221  Q
    |||||||| | ||||||||||| ||||||||||||||||||||||    
T  48903164 taaatcatgatgaaaagccaactaatgaatagccccattaaagag 48903120  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 7773696 - 7773735
Alignment:
Q  190 aaagccaaccaatgaatagccccattaaagagaacccctt 229  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  7773696 aaagccaaccaatgaatagccccattaaatagaaaccctt 7773735  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 48705237 - 48705288
Alignment:
Q  177 taaatcataaggaaaagccaaccaatgaatagccccattaaagagaacccct 228  Q
    |||||||| | || |||||||||||||||||||||||||| |||| ||||||    
T  48705237 taaatcatgacgataagccaaccaatgaatagccccattatagagcacccct 48705288  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 7771590 - 7771552
Alignment:
Q  191 aagccaaccaatgaatagccccattaaagagaacccctt 229  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  7771590 aagccaaccaatgaatagccccattaaatagaaaccctt 7771552  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 7790275 - 7790237
Alignment:
Q  191 aagccaaccaatgaatagccccattaaagagaacccctt 229  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  7790275 aagccaaccaatgaatagccccattaaatagaaaccctt 7790237  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 49040984 - 49041038
Alignment:
Q  158 caacaataacatagaccaataaatcataaggaaaagccaaccaatgaatagcccc 212  Q
    ||||||||||||| ||  ||| ||||| | |||||||||||||||||||||||||    
T  49040984 caacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagcccc 49041038  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 48898926 - 48898893
Alignment:
Q  188 gaaaagccaaccaatgaatagccccattaaagag 221  Q
    ||||||||||||||||||||||||||||| ||||    
T  48898926 gaaaagccaaccaatgaatagccccattatagag 48898893  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 49044055 - 49044088
Alignment:
Q  188 gaaaagccaaccaatgaatagccccattaaagag 221  Q
    ||||||||||||| ||||||||||||||||||||    
T  49044055 gaaaagccaaccagtgaatagccccattaaagag 49044088  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 48863477 - 48863421
Alignment:
Q  156 ggcaacaataacatagaccaataaatcataaggaaaagccaaccaatgaatagcccc 212  Q
    ||||||||||||||| ||   || ||||| | |||||||||||||||||||||||||    
T  48863477 ggcaacaataacataaacacctatatcatgacgaaaagccaaccaatgaatagcccc 48863421  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 47522109 - 47522160
Alignment:
Q  13 aatatcatatttgtagagagaaaaatgacgataaaaagaataaagggagtag 64  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  47522109 aatatcatatttgtagagagaaaaatgacgataaagataataaagggagtag 47522160  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 47522179 - 47522227
Alignment:
Q  89 tgaatgcataccatttccgaatcctttgatttgataacaataaagagag 137  Q
    |||||||||||||||| || ||||||||||||||| |||||||||||||    
T  47522179 tgaatgcataccattttcggatcctttgatttgatgacaataaagagag 47522227  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 24367392 - 24367327
Alignment:
Q  156 ggcaacaataacatagaccaataaatcataaggaaaagccaaccaatgaatagccccattaaagag 221  Q
    |||||||||||||| |||   || ||||||| |||||| |||||| ||||||||||||| ||||||    
T  24367392 ggcaacaataacattgacacgtatatcataacgaaaagtcaaccagtgaatagccccatgaaagag 24367327  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 21979465 - 21979539
Alignment:
Q  156 ggcaacaataacatagaccaataaatcataaggaaaagccaaccaatgaatagccccattaaagagaaccccttg 230  Q
    ||||||||||||| | ||  ||||||||||  |||||| ||||||||||||||||| |||||||| |||||||||    
T  21979465 ggcaacaataacaaacacagataaatcataccgaaaagtcaaccaatgaatagccctattaaagaaaaccccttg 21979539  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 21016034 - 21015992
Alignment:
Q  176 ataaatcataaggaaaagccaaccaatgaatagccccattaaa 218  Q
    ||||||||| | |||||||||||||||||||||||||||||||    
T  21016034 ataaatcatgacgaaaagccaaccaatgaatagccccattaaa 21015992  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 12195521 - 12195484
Alignment:
Q  183 ataaggaaaagccaaccaatgaatagccccattaaaga 220  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  12195521 ataaggagaagccaaccaatgaatagccccattaaaga 12195484  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 12439949 - 12439912
Alignment:
Q  183 ataaggaaaagccaaccaatgaatagccccattaaaga 220  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  12439949 ataaggagaagccaaccaatgaatagccccattaaaga 12439912  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 15349072 - 15349038
Alignment:
Q  188 gaaaagccaaccaatgaatagccccattaaagaga 222  Q
    ||||||||||||||||||||||||||||| |||||    
T  15349072 gaaaagccaaccaatgaatagccccattatagaga 15349038  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 48884036 - 48883984
Alignment:
Q  177 taaatcataaggaaaag-ccaaccaatgaatagccccattaaagagaacccct 228  Q
    |||||||||| |||||  |||||||||||||||||||||||||| ||| ||||    
T  48884036 taaatcataacgaaaaaaccaaccaatgaatagccccattaaagggaaaccct 48883984  T

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