View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20706_low_64 (Length: 246)
Name: NF20706_low_64
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_64 |
 | |
|
| [»] scaffold0211 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0084 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 19555929 - 19556151
Alignment:
| Q |
1 |
agcaatagaagtctcttagtggtgaccttgagcattgtaagtctcttgaaagaatcgttgagcattgaaattctcttgcaagtgtgcttgagcattgaga |
100 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
19555929 |
agcaatagaagtctcttggtagtgaccttgagcattgtaagtctcttgaaagagtcgttgagcattggaattctcttgcaagtgtgctggagaattgaga |
19556028 |
T |
|
| Q |
101 |
agtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaactagactagactactttgtgttgtgggaggaa |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
19556029 |
agtctattggaatagtctttaagcaattgtaatatatgagattatagtgaaattcattggaagtgcaacgggactggactactttgtgttgtgggaggaa |
19556128 |
T |
|
| Q |
201 |
ccagtataaattatttttgtctg |
223 |
Q |
| |
|
|||||||||||| ||| |||||| |
|
|
| T |
19556129 |
ccagtataaattgtttgtgtctg |
19556151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 22223317 - 22223526
Alignment:
| Q |
1 |
agcaatagaagtctcttagtggtgaccttgagcattgtaagtctcttgaaagaatcgttgagcattgaaattctcttgcaagtgtgcttgagcattgaga |
100 |
Q |
| |
|
||||||||||||||||| | | || ||||||||| || |||||||||| || | | ||||| | ||| | |||||||||| |||||||||||||| || |
|
|
| T |
22223317 |
agcaatagaagtctcttggagttgtccttgagcagtggaagtctcttgttagtaacattgagaaaagaagt-ctcttgcaagggtgcttgagcattggga |
22223415 |
T |
|
| Q |
101 |
agtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaactagactagactact-ttgtgttgtgggagga |
199 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||||||||||||||||||||| | |||||||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
22223416 |
agtctcgtggaagagtccttcagcaattgtaatatgtgagattatagtgaaatcccttggaagtgcaagaggacttgactactcctgtgttgtgggagga |
22223515 |
T |
|
| Q |
200 |
accagtataaa |
210 |
Q |
| |
|
||||||||||| |
|
|
| T |
22223516 |
accagtataaa |
22223526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 203
Target Start/End: Original strand, 21588966 - 21589098
Alignment:
| Q |
72 |
tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaacta |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| || |||| || | ||||||||||||||||||||||||||||| | |||||||||||| | |
|
|
| T |
21588966 |
tctcttgcaagtgtgcttgagcattgagaagtctcttgaaagagtcattgataaattgtaatatgtgagattatagtgaaatcctttggaagtgcaaaga |
21589065 |
T |
|
| Q |
172 |
gactagactact-ttgtgttgtgggaggaacca |
203 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||| |
|
|
| T |
21589066 |
gactggactactcctgtgttttgggaggaacca |
21589098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 212
Target Start/End: Complemental strand, 18445461 - 18445306
Alignment:
| Q |
58 |
ttgagcattgaaattctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcat |
157 |
Q |
| |
|
||||||| || || ||||||||||||||||||||||||| ||||||| |||||| ||||||| |||||||||||| ||||||||||||| |||| | | |
|
|
| T |
18445461 |
ttgagcagtggaagtctcttgcaagtgtgcttgagcatttggaagtctcttggaagagtccttgagcaattgtaatctgtgagattataggaaaatccct |
18445362 |
T |
|
| Q |
158 |
tggaagtgcaactagactagactact-ttgtgttgtgggaggaaccagtataaatt |
212 |
Q |
| |
|
||||||||||| |||| ||||||| |||||| |||||||||| | |||||||| |
|
|
| T |
18445361 |
tggaagtgcaagaggactggactactcatgtgttctgggaggaactaatataaatt |
18445306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 17474618 - 17474723
Alignment:
| Q |
58 |
ttgagcattgaaattctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaata-tgtgagattatagtgaaattca |
156 |
Q |
| |
|
|||| ||||| || |||||||| |||| |||||| ||| |||||||| ||| | |||||| ||||||||||||| |||| |||||||||||||| | |
|
|
| T |
17474618 |
ttgatcattggaagtctcttgcttgtgtacttgagtatttagaagtctcttgagagtgtccttgagcaattgtaatattgtgtgattatagtgaaatcct |
17474717 |
T |
|
| Q |
157 |
ttggaa |
162 |
Q |
| |
|
|||||| |
|
|
| T |
17474718 |
ttggaa |
17474723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 72 - 213
Target Start/End: Original strand, 12669745 - 12669887
Alignment:
| Q |
72 |
tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaacta |
171 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||| || ||||||| | ||||| |||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
12669745 |
tctcttgcaagtgtgcttgagcatttggaagtcttttgaaagagtccttgaacaattttaatcaatgaaattatagtgaaattccttggaagtgcaaggg |
12669844 |
T |
|
| Q |
172 |
gactagactact-ttgtgttgtgggaggaaccagtataaatta |
213 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12669845 |
gactggactactattgtgttgtgggaggaaccagtataaatta |
12669887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 19019775 - 19019916
Alignment:
| Q |
72 |
tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaattcattggaagtgcaact |
170 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| |||||| ||||||| |||||| ||||| | |||||||||||||||||||| || |||||||| |
|
|
| T |
19019775 |
tctcttgcaagtgtgcttgagcagtg-gaagtctcttggaagagtccttgagcaatggtaatctagtgagattatagtgaaattccttaaaagtgcaagg |
19019873 |
T |
|
| Q |
171 |
agactagactactt-tgtgttgtgggaggaaccagtataaatt |
212 |
Q |
| |
|
|||| ||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
19019874 |
ggactggactactcatgtattgtgggaggaaccagtataaatt |
19019916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 22664061 - 22663964
Alignment:
| Q |
72 |
tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaattcattggaagtgcaa |
168 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || ||| ||||||| ||| ||| |||| | |||||||||||| ||||| | || ||||||||| |
|
|
| T |
22664061 |
tctcttgcaagtgtgcttgagcatttggaagtctcttagaagagtccttgagctattataatctagtgagattatagcgaaatcccttagaagtgcaa |
22663964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 10917792 - 10917654
Alignment:
| Q |
72 |
tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaacta |
171 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | |||||| ||||||||||| ||||||||||||||||||||| |||||| | ||||||| |||| |
|
|
| T |
10917792 |
tctcttgcaagaatgcttgagcattgagaagtttcttggaagagtccttaagccattgtaatatgtgagattataatgaaatcccttggaagagcaa-gg |
10917694 |
T |
|
| Q |
172 |
gactagactact-ttgtgttgtgggaggaaccagtataaa |
210 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
10917693 |
gactggactactcctgtgttgtgggaggaactagtataaa |
10917654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 203
Target Start/End: Original strand, 20747246 - 20747377
Alignment:
| Q |
72 |
tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaacta |
171 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || ||| ||||||| |||| ||||||| | | || |||||||||||| | ||| |||||||| |
|
|
| T |
20747246 |
tctcttgtaagtgtgcttgagcattgagaagtctcttagaagagtccttgagcatttgtaatgt-ttaggttatagtgaaatcccttgaaagtgcaaggg |
20747344 |
T |
|
| Q |
172 |
gactagactac-tttgtgttgtgggaggaacca |
203 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||| |
|
|
| T |
20747345 |
gactggactacttttgtgttatgggaggaacca |
20747377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 210
Target Start/End: Complemental strand, 10923008 - 10922877
Alignment:
| Q |
84 |
gtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaactagactagactact |
183 |
Q |
| |
|
|||||||||||||||||||| | |||||| ||| ||| |||||||||||| |||||||||||| |||||| | ||| |||||||| ||||| ||||||| |
|
|
| T |
10923008 |
gtgcttgagcattgagaagtttcttggaagagtacttgagcaattgtaatctgtgagattataatgaaatcccttgaaagtgcaa-gagactggactact |
10922910 |
T |
|
| Q |
184 |
------ttgtgttgtgggaggaaccagtataaa |
210 |
Q |
| |
|
||||| |||||||||||| |||||||| |
|
|
| T |
10922909 |
cctatgttgtggtgtgggaggaactagtataaa |
10922877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 11074036 - 11073823
Alignment:
| Q |
1 |
agcaatagaagtctcttagtggtgaccttgagcattgtaagtctcttgaaagaatcgttgagcattgaaattctcttgcaagtgtgcttgagcattgaga |
100 |
Q |
| |
|
||||||||||||||||| | | || ||||||||| || |||||||||| || | || |||||| || |||||| ||| | | || ||||||| | |
|
|
| T |
11074036 |
agcaatagaagtctcttggagttgtccttgagcagtggaagtctcttggtagttaccttaagcattagaaatctcttccaaattttctagagcatttgaa |
11073937 |
T |
|
| Q |
101 |
agtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaattcattggaagtgcaactagactagactact-ttgtgttgtgggagg |
198 |
Q |
| |
|
||||| |||||| | |||||||||||||||||||| |||||||||||||||||| || ||||||||| |||| ||||||| || ||||| ||||| |
|
|
| T |
11073936 |
agtctcttggaagattccttaagcaattgtaatatagtgagattatagtgaaatctcttagaagtgcaaggggactggactactcctgcgttgttggagg |
11073837 |
T |
|
| Q |
199 |
aaccagtataaatt |
212 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
11073836 |
aaccaatataaatt |
11073823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 16201778 - 16201916
Alignment:
| Q |
72 |
tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaacta |
171 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| |||||| ||||||| | || |||||| | ||| |||||||||||| | |||||||||||| |
|
|
| T |
16201778 |
tctcttgcaagtgtg-ttgagaattgagaagtctcttggaagagtccttgaacatctgtaatttatgaatttatagtgaaatcccttggaagtgcaaggg |
16201876 |
T |
|
| Q |
172 |
gactagactact-ttgtgttgtgggaggaaccagtataaa |
210 |
Q |
| |
|
|||| || |||| |||||||| ||| ||||||||||||| |
|
|
| T |
16201877 |
gactggattactcctgtgttgtaggatgaaccagtataaa |
16201916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 168
Target Start/End: Original strand, 4768168 - 4768279
Alignment:
| Q |
58 |
ttgagcattgaaattctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaattca |
156 |
Q |
| |
|
|||||||||| || ||||| ||||||| ||||||||| |||||| ||| || ||||||| |||| ||||||| | |||||||||||||||||| |
|
|
| T |
4768168 |
ttgagcattggaaatctctcaaaagtgtgtttgagcatttgaaagtctcttgaaagagtccttgagcatttgtaatctagtgagattatagtgaaatctc |
4768267 |
T |
|
| Q |
157 |
ttggaagtgcaa |
168 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4768268 |
ttggaagtgcaa |
4768279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 14427630 - 14427712
Alignment:
| Q |
82 |
gtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaata-tgtgagattatagtgaaattcattggaag |
163 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |||||| ||||||||||||| ||| |||| ||||||||| | ||||||| |
|
|
| T |
14427630 |
gtgtgcttgagcatttcgaagtctcttggaagtgtccttgagcaattgtaatattgtatgattctagtgaaatcccttggaag |
14427712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 17118645 - 17118577
Alignment:
| Q |
82 |
gtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtg |
149 |
Q |
| |
|
||||||||||||||| ||||||| ||| || |||||| |||||||||||| | |||||||||||||| |
|
|
| T |
17118645 |
gtgtgcttgagcatttggaagtctcttgaaaatgtccttgagcaattgtaatctagtgagattatagtg |
17118577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 24495115 - 24495251
Alignment:
| Q |
77 |
tgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaactagacta |
176 |
Q |
| |
|
||||||||| |||||||||| ||||||| |||||| ||||| | |||||||||||| ||||||||||| |||||| | ||| |||||||| |||| |
|
|
| T |
24495115 |
tgcaagtgtacttgagcatttggaagtctcttggaagagtccctgagcaattgtaatcagtgagattataatgaaatcccttgaaagtgcaaggggactg |
24495214 |
T |
|
| Q |
177 |
gactact-ttgtgttgtgggaggaaccagtataaatt |
212 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24495215 |
gactactcttgtgttgtgggaggaaccagtataaatt |
24495251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 211
Target Start/End: Complemental strand, 22747934 - 22747792
Alignment:
| Q |
72 |
tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaa-ttgtaat-atgtgagattatagtgaaattcattggaagtgcaac |
169 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||| ||||||| || || ||||||| | || ||||||||||||| | |||||||||||| |
|
|
| T |
22747934 |
tctcttgcagttgtgcttgagcattgagaagtctcttggaagagtccttgagaaatttgtaatcctatgttattatagtgaaatcccttggaagtgcaag |
22747835 |
T |
|
| Q |
170 |
tagactagactact-ttgtgttgtgggaggaaccagtataaat |
211 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
22747834 |
gggactggactactcttgtgttatgggaggaaccaatataaat |
22747792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 212
Target Start/End: Original strand, 24885845 - 24885976
Alignment:
| Q |
82 |
gtgtgcttgagcattgagaagtctattggaatagtccttaagc-aattgtaatatgtgagattatagtgaaattcattggaagtgcaactagactagact |
180 |
Q |
| |
|
|||||||||||||||||||||||| |||| | |||||||||| ||||||||| | | |||||||||||||| | |||||||||||| || |||| | |
|
|
| T |
24885845 |
gtgtgcttgagcattgagaagtctcttggtgt-gtccttaagcaaattgtaatcagagtgattatagtgaaatcccttggaagtgcaaagggattagaat |
24885943 |
T |
|
| Q |
181 |
actt-tgtgttgtgggaggaaccagtataaatt |
212 |
Q |
| |
|
|||| |||||||| |||| ||||| |||||||| |
|
|
| T |
24885944 |
acttctgtgttgtaggagaaaccattataaatt |
24885976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 26391920 - 26391832
Alignment:
| Q |
65 |
ttgaaattctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaa |
152 |
Q |
| |
|
|||||| ||||||||||||||| |||||| || |||||| ||| || |||| ||||||||||||||||| |||| ||||||||||| |
|
|
| T |
26391920 |
ttgaaagtctcttgcaagtgtgtttgagcgtttgaaagtctcttgaaagagtctttaagcaattgtaatataatgaggttatagtgaaa |
26391832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 168
Target Start/End: Original strand, 13693643 - 13693754
Alignment:
| Q |
58 |
ttgagcattgaaattctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaattca |
156 |
Q |
| |
|
||||| ||| ||| |||||| |||||||||||||| ||| || ||| |||||| |||||| |||||||||||| | |||||||||||| ||||| | |
|
|
| T |
13693643 |
ttgagaattaaaagtctcttccaagtgtgcttgagaatttgaaattctcttggaagtgtccttgagcaattgtaatctagtgagattatagcgaaatcct |
13693742 |
T |
|
| Q |
157 |
ttggaagtgcaa |
168 |
Q |
| |
|
| |||||||||| |
|
|
| T |
13693743 |
tgggaagtgcaa |
13693754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 19490446 - 19490303
Alignment:
| Q |
72 |
tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgta--atatgtgagattatagtgaaattcattggaagtgcaac |
169 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| |||||| ||| ||| ||||||| || ||||||||||| ||| |||||||| |||||| ||| | |
|
|
| T |
19490446 |
tctcttgcaagagtgcttgagcatttggaagtctcttggaagagttcttgagcaattttaatatatgtgagataataatgaaattccttggaaatgctag |
19490347 |
T |
|
| Q |
170 |
tagactagactact-ttgtgttgtgggaggaaccagtataaatt |
212 |
Q |
| |
|
|||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
19490346 |
gggactggactactcctatgttgtgggaggaaccagtataaatt |
19490303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 19730986 - 19730845
Alignment:
| Q |
72 |
tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaa-ttgtaat-atgtgagattatagtgaaattcattggaagtgcaac |
169 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| |||||| |||||||| ||| ||||||| ||||||||||||||||||| | |||||| ||||| |
|
|
| T |
19730986 |
tctcttgcagttgtgcttgagcatagagaagtctcttggaagtgtccttaatcaatttgtaatcctgtgagattatagtgaaatcccttggaaatgcaat |
19730887 |
T |
|
| Q |
170 |
tagactagactac-tttgtgttgtgggaggaaccagtataaa |
210 |
Q |
| |
|
||||||||||| |||| |||| ||| ||||||||||||| |
|
|
| T |
19730886 |
gtgactagactacttttggattgtaggatgaaccagtataaa |
19730845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 34659422 - 34659351
Alignment:
| Q |
140 |
gattatagtgaaattcattggaagtgcaactagactagactact-ttgtgttgtgggaggaaccagtataaa |
210 |
Q |
| |
|
|||||||||||||| | || ||||| ||| |||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34659422 |
gattatagtgaaatcccttagaagtacaaggggactggactactcttgtgttgtgggaggaaccagtataaa |
34659351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 162
Target Start/End: Original strand, 10815273 - 10815373
Alignment:
| Q |
63 |
cattgaaattctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaattcattgga |
161 |
Q |
| |
|
|||||||| |||||||| |||||||| | |||| ||||||| |||| | |||||| |||||||||||| | |||| ||||||||||||| | ||||| |
|
|
| T |
10815273 |
cattgaaagtctcttgcccgtgtgcttaaacatttggaagtctcttggcaatgtccttgagcaattgtaatctagtgatattatagtgaaatcccttgga |
10815372 |
T |
|
| Q |
162 |
a |
162 |
Q |
| |
|
| |
|
|
| T |
10815373 |
a |
10815373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 22974741 - 22974630
Alignment:
| Q |
58 |
ttgagcattgaaattctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaattca |
156 |
Q |
| |
|
||||||||| || |||| ||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||||| | || |||||||| | |||| | |
|
|
| T |
22974741 |
ttgagcattagaagtctcctgcaagtatgcttgagcattgagaagtctcttggacgagtccttgagcaattgtaatctagttagattatactaaaatccc |
22974642 |
T |
|
| Q |
157 |
ttggaagtgcaa |
168 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22974641 |
ttggaagtgcaa |
22974630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 19143409 - 19143548
Alignment:
| Q |
74 |
tcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaa-ttgtaatat-gtgagattatagtgaaattcattggaagtgcaacta |
171 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||||| ||||||| || || ||||||| | | | |||||||||||||| | |||||||||||| |
|
|
| T |
19143409 |
tcttgcagttgtgcttgagcattgagaattctcttggaagagtccttgagaaatttgtaatctagagtgattatagtgaaatcccttggaagtgcaaggg |
19143508 |
T |
|
| Q |
172 |
gactagactact-ttgtgttgtgggaggaaccagtataaa |
210 |
Q |
| |
|
||| |||||| ||||||||||||||||||| ||||||| |
|
|
| T |
19143509 |
aactgaactactcttgtgttgtgggaggaacctgtataaa |
19143548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 20742808 - 20742947
Alignment:
| Q |
74 |
tcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaa-ttgtaatat-gtgagattatagtgaaattcattggaagtgcaacta |
171 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||||| ||||||| || || ||||||| | | | |||||||||||||| | |||||||||||| |
|
|
| T |
20742808 |
tcttgcagttgtgcttgagcattgagaattctcttggaagagtccttgagaaatttgtaatctagagtgattatagtgaaatcccttggaagtgcaaggg |
20742907 |
T |
|
| Q |
172 |
gactagactact-ttgtgttgtgggaggaaccagtataaa |
210 |
Q |
| |
|
||| |||||| ||||||||||||||||||| ||||||| |
|
|
| T |
20742908 |
aactgaactactcttgtgttgtgggaggaacctgtataaa |
20742947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 212
Target Start/End: Complemental strand, 20052870 - 20052739
Alignment:
| Q |
82 |
gtgtgcttgagcattgagaagtctattggaatagtccttaagcaa-ttgtaatatgtgagattatagtgaaattcattggaagtgcaactagactagact |
180 |
Q |
| |
|
|||||||||||||||||||||||| |||| || ||||| ||||| ||||||| | | |||||||||||||| | | ||||||||| |||||||| |
|
|
| T |
20052870 |
gtgtgcttgagcattgagaagtctcttggtgta-tccttgagcaagttgtaatctaagtgattatagtgaaatccctaagaagtgcaagggaactagact |
20052772 |
T |
|
| Q |
181 |
act-ttgtgttgtgggaggaaccagtataaatt |
212 |
Q |
| |
|
||| |||| ||||||||||||||| |||||||| |
|
|
| T |
20052771 |
actcttgttttgtgggaggaaccaatataaatt |
20052739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 23433560 - 23433700
Alignment:
| Q |
72 |
tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaat-atgtgagattatagtgaaattcattggaagtgcaact |
170 |
Q |
| |
|
|||||||||| |||| || |||| ||||||| | |||||| ||||||| |||| ||||||| ||||| ||||||||||||| | |||||||||||| |
|
|
| T |
23433560 |
tctcttgcaattgtggttaagcaaagagaagtttcttggaagagtccttgagcatttgtaatcatgtgttattatagtgaaatcccttggaagtgcaagg |
23433659 |
T |
|
| Q |
171 |
agactagactactt-tgtgttgtgggaggaaccagtataaa |
210 |
Q |
| |
|
||| ||||||| ||||||||||||||||||| |||||| |
|
|
| T |
23433660 |
gaactggactactcctgtgttgtgggaggaaccactataaa |
23433700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 18565495 - 18565354
Alignment:
| Q |
72 |
tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaa-ttgtaatatgt-gagattatagtgaaattcattggaagtgcaac |
169 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| |||| | |||||| ||||| ||||||| | | |||||||||||||| |||||||| ||||| |
|
|
| T |
18565495 |
tctcttgcagttgtgcttgagcaaagagaagtctcttggtagtgtccttgagcaagttgtaatccatagtgattatagtgaaatccattggaaatgcaag |
18565396 |
T |
|
| Q |
170 |
tagactagactact-ttgtgttgtgggaggaaccagtataaa |
210 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| |||||||| |
|
|
| T |
18565395 |
gggactggactactcttgtgttgtgggaggaactagtataaa |
18565354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 13644732 - 13644656
Alignment:
| Q |
133 |
tatgtgagattatagtgaaattcattggaagtgcaactagactagactactt-tgtgttgtgggaggaaccagtata |
208 |
Q |
| |
|
|||||| |||||||||||||| | ||| |||||||| |||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
13644732 |
tatgtgtgattatagtgaaatcccttgaaagtgcaagcggactggactactcctgtgttgtgggaggaaccagtata |
13644656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 13745157 - 13745081
Alignment:
| Q |
133 |
tatgtgagattatagtgaaattcattggaagtgcaactagactagactactt-tgtgttgtgggaggaaccagtata |
208 |
Q |
| |
|
|||||| |||||||||||||| | ||| |||||||| |||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
13745157 |
tatgtgtgattatagtgaaatcccttgaaagtgcaagcggactggactactcctgtgttgtgggaggaaccagtata |
13745081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 212
Target Start/End: Original strand, 27766113 - 27766241
Alignment:
| Q |
86 |
gcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaattcattggaagtgcaactagactagactactt |
184 |
Q |
| |
|
||||||||||| ||||||| ||| ||| |||||| |||||||||||| | ||| |||||||||||||||| ||||||||| || |||| |||||||| |
|
|
| T |
27766113 |
gcttgagcatttggaagtcttttgaaattgtccttgagcaattgtaatctagtgtgattatagtgaaattccttggaagtgtaaggggactggactactt |
27766212 |
T |
|
| Q |
185 |
-tgtgttgtgggaggaaccagtataaatt |
212 |
Q |
| |
|
|| |||| |||||||| |||||||||| |
|
|
| T |
27766213 |
ctggtttgtaggaggaacaagtataaatt |
27766241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 19564095 - 19563953
Alignment:
| Q |
72 |
tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgt-gagattatagtgaaattcattggaagtgcaact |
170 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||| |||||| ||||||| || ||||||||| || | ||||||| |||| | | |||||||||||| |
|
|
| T |
19564095 |
tctcttgcaagggtgcttaagcattaggaagtctcttggaagagtccttcagtaattgtaatcagtagtgattataatgaattcccttggaagtgcaagg |
19563996 |
T |
|
| Q |
171 |
agactagactact-ttgtgttgtgggaggaaccagtataaatt |
212 |
Q |
| |
|
|| | ||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
19563995 |
ggattggaccactcatgtgttgtgggaggaaccagtataaatt |
19563953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 21770230 - 21770308
Alignment:
| Q |
76 |
ttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaat |
153 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |||||| ||||||| |||||||||||| | || ||||||||||||||| |
|
|
| T |
21770230 |
ttgcaagtgtgcttgagtatttggaagtctcttggaagagtccttgagcaattgtaatctagtaagattatagtgaaat |
21770308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 8685129 - 8684988
Alignment:
| Q |
72 |
tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattg-taat-atgtgagattatagtgaaattcattggaagtgcaac |
169 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||| | |||||| ||| ||| |||| || |||| ||||| |||||||||||||| | |||||||||||| |
|
|
| T |
8685129 |
tctcttgcaattgtggttgagcaaagagaagtttcttggaagagtgcttgagcattttataatcatgtgtgattatagtgaaatcccttggaagtgcaag |
8685030 |
T |
|
| Q |
170 |
tagactagactact-ttgtgttgtgggaggaaccagtataaa |
210 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| |||||| |
|
|
| T |
8685029 |
gggactggactactcctgtgttgtgggaggaaccactataaa |
8684988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 17418153 - 17418292
Alignment:
| Q |
72 |
tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaat-atgtgagattatagtgaaattcattggaagtgcaact |
170 |
Q |
| |
|
||||||| ||||||| ||||| || |||||||| || || ||||||| |||||||||||| | | | |||||||||||||||| ||||||| |||| |
|
|
| T |
17418153 |
tctcttgaaagtgtgattgaggatc-agaagtctcttaaaagagtccttgagcaattgtaatcaagagtgattatagtgaaattccttggaagcgcaagg |
17418251 |
T |
|
| Q |
171 |
agactagactactt-tgtgttgtgggaggaaccagtataaa |
210 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| |||||| |
|
|
| T |
17418252 |
ggactggactactcctgtgttgtgggaggaaccaatataaa |
17418292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 17435698 - 17435620
Alignment:
| Q |
140 |
gattatagtgaaattcattggaagtgcaactagactagactact-ttgtgttgtgggaggaaccagtataaattatttt |
217 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||| || |||| |||| |||| ||||||||||||||||||| |||| |
|
|
| T |
17435698 |
gattatagtgaaatcccttggaagtgcaaagggactggagtactcttgttttgtaggaggaaccagtataaattgtttt |
17435620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 21823039 - 21822966
Alignment:
| Q |
140 |
gattatagtgaaattcattggaagtgcaactagactagactact-ttgtgttgtgggaggaaccagtataaatt |
212 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||| ||||||| |||||||||||||||||| |||||||| |
|
|
| T |
21823039 |
gattatagtgaaatcccttggaagtgcaatgggactggactactcctgtgttgtgggaggaaccgatataaatt |
21822966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 26655332 - 26655409
Alignment:
| Q |
134 |
atgtgagattatagtgaaattcattggaagtgcaactagactagactactt-tgtgttgtgggaggaaccagtataaa |
210 |
Q |
| |
|
||||| |||||||||||||| | ||| |||||||| |||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
26655332 |
atgtgtgattatagtgaaatcccttgaaagtgcaaggggactggaccactcctgtgttgtgggaggaaccagtataaa |
26655409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 25248 - 25194
Alignment:
| Q |
74 |
tcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaatt |
128 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||| ||||||| ||||||| |
|
|
| T |
25248 |
tcttgcaattgtgcttgagcattaagaagtctattggaagagtccttgagcaatt |
25194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 382302 - 382230
Alignment:
| Q |
83 |
tgtgcttgagcattgagaagtctattggaatagtccttaagcaa-ttgtaat-atgtgagattatagtgaaat |
153 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||||||| ||||| ||||||| ||| | |||||||||||||| |
|
|
| T |
382302 |
tgtgcttgagcattaagaagtctcttggaagagtccttgagcaatttgtaatcatgagtgattatagtgaaat |
382230 |
T |
|
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Target: scaffold0084 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 30606 - 30651
Alignment:
| Q |
83 |
tgtgcttgagcattgagaagtctattggaatagtccttaagcaatt |
128 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||| ||||||| |
|
|
| T |
30606 |
tgtgcttgagcattgagaagtctactagaagagtccttgagcaatt |
30651 |
T |
|
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