View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_66 (Length: 241)
Name: NF20706_low_66
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_66 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 39582719 - 39582495
Alignment:
| Q |
17 |
acaccatttctcaacagtttgtgcagcaggttccgctgccccttcaaatctattagcatagttaaattcatcagtgaaatcagaagctaccatggctatt |
116 |
Q |
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| T |
39582719 |
acaccatttctcaacagtttgtgcagcaggttccgctgccccttcaaatctattagcatagttaaattcatcagtgaaatcagaagctaccatggctatt |
39582620 |
T |
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| Q |
117 |
tgaatagagtcaaaatgcnnnnnnngaaacaccatttgatttttaccctgccaaattttccacagttatatcaaaaaattgagaggctaagtggtctttt |
216 |
Q |
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| T |
39582619 |
tgaatagagtcaaaatgctttttttgaaacaccatttgatttttaccctgccaaattttcgacagttatatcaaaaaattgagaggctaagtggtctttt |
39582520 |
T |
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| Q |
217 |
ttggataaccactcaatcatccaat |
241 |
Q |
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| T |
39582519 |
ttggataaccactcaatcatccaat |
39582495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 227
Target Start/End: Complemental strand, 53330673 - 53330516
Alignment:
| Q |
69 |
ttagcatagttaaattcatcagtgaaatcagaagctaccatggctatttgaatagagtcaaaatgcnnnnnnngaaacaccatttgatttttaccctgcc |
168 |
Q |
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||||||| ||||| ||| |||||||||||| |||| | |||||||||| |||| |||||||||| ||||||||||||||||| ||| |||| |
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| T |
53330673 |
ttagcatcattaaactcaacagtgaaatcagcagctgcattggctatttgtatagggtcaaaatgcttgttttgaaacaccatttgatttctact-tgcc |
53330575 |
T |
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| Q |
169 |
aaattttccacagttatatcaaaaaattgagaggctaagtggtcttttttggataacca |
227 |
Q |
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| T |
53330574 |
aaattttccagagccataccaaaatattgagaggctaaatgatcttttttggataacca |
53330516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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