View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_69 (Length: 237)
Name: NF20706_low_69
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 43611233 - 43611011
Alignment:
| Q |
1 |
caaattagggtgcgagtgttagtttgaaaaatagaggagaaccagtctattcaaccatgttcttttcatctttccatttcttagtaatgctctgatcaat |
100 |
Q |
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| T |
43611233 |
caaataagggtgcgagtgttagtttgaaaaatagaggagaaccagtctattcaaccatgttcttttcatctttccatttcttagtaatgctctgatcaat |
43611134 |
T |
|
| Q |
101 |
tannnnnnnccaaacttaatggcagagttaccatcgctactcgtttccaacgtgctttcatgcaacttctttctaatgcacaattcgaagaactatcagc |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43611133 |
tatttttttccaaacttaatggcagagttaccatcgctactcgtttccaacgtgctttcatgcaacttctttctaatgcacaattcgaagaactatcagc |
43611034 |
T |
|
| Q |
201 |
tcgggatctaacgctaacatctg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
43611033 |
tcgggatctaacgctaacatctg |
43611011 |
T |
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