View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_74 (Length: 233)
Name: NF20706_low_74
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_74 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 37848906 - 37848674
Alignment:
| Q |
1 |
cccttgactagtgaggttaagggaaattaaattgttggcatggtcacatcgaacaccaacccatgagcatggattggaatcagaaggattccagctagag |
100 |
Q |
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| T |
37848906 |
cccttgactagggaggttaagggaaattaaattgttggcatggtcacatcgaacaccaacccatgagcatggattggaatcagaaggattccagctagag |
37848807 |
T |
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| Q |
101 |
tcgatgataggaggaacaatggtccagtctgtcatgagtgacaacagagtcaaaccatcatagttaagagcagtagcaccatgcaaaaaggaaataatca |
200 |
Q |
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| T |
37848806 |
tcgatgataggaggaacaatggtccagtctgtcatgagtgacaacagagtcaaaccatcatagttaagagcagtagcaccatgcaaaaaggaaatagtca |
37848707 |
T |
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| Q |
201 |
acaagtgtgtgataattctactgctatagctag |
233 |
Q |
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| T |
37848706 |
acaagtgtgtgataattctactgctatagctag |
37848674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 37841142 - 37840929
Alignment:
| Q |
9 |
tagtgaggttaagggaaattaaattgttggcatggtcacatcgaacaccaacccatgagcatggattggaatcagaaggattccagctagagtcgatgat |
108 |
Q |
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| T |
37841142 |
tagtgagattaatggaaatgacattgttggtatggtcacattgaacaccaacccatgagcatggaattgaatcagaagctttccaactagagttgatgag |
37841043 |
T |
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| Q |
109 |
aggaggaacaatggtccagtctgtcatgagtgacaacagagtcaaaccatcatagttaagagcagtagcaccatgcaaaaaggaaataatcaacaagtgt |
208 |
Q |
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| T |
37841042 |
aggaggaacaaaggtccagtgagtcaagagtgacaacagagtcaacccatcagtggtaagtgcaaaaccaccatgcaagaaggaaacaatcaacaagagt |
37840943 |
T |
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| Q |
209 |
gtgataattctact |
222 |
Q |
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| T |
37840942 |
ttgataattctact |
37840929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 37829823 - 37829599
Alignment:
| Q |
5 |
tgactagtgaggttaagggaaattaaattgttggcatggtcacatcgaacaccaacccatgagcatggattggaatcagaaggattccagctagagtcga |
104 |
Q |
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|||| ||||||| |||||||||| | ||| | | |||||||||| |||||||||||||||||||||||| ||||||||||| ||||| ||||||| || |
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| T |
37829823 |
tgaccagtgaggctaagggaaatgacattataagtatggtcacattgaacaccaacccatgagcatggatcggaatcagaagccttccaactagagttga |
37829724 |
T |
|
| Q |
105 |
tgataggaggaacaatggtccagtctgtcatgagtgacaacagagtcaaaccatcatagttaagagcagtagcaccatgcaaaaaggaaataat---caa |
201 |
Q |
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| T |
37829723 |
ttagcggaggaacaaaggtccaacgtgtcaagagtgacatcaaagtcaaaccatcagaggtaagagcagtagcaccatagaagaaggaaataatcgacaa |
37829624 |
T |
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| Q |
202 |
caagtgtgtgataattctactgcta |
226 |
Q |
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|||| |||||||||| |||||||| |
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| T |
37829623 |
caagattgtgataattttactgcta |
37829599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 37835486 - 37835319
Alignment:
| Q |
43 |
gtcacatcgaacaccaacccatgagcatggattggaatcagaaggattccagctagagtcgatgataggaggaacaatggtccagtctgtcatgagtgac |
142 |
Q |
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| T |
37835486 |
gtcacattgaacaccaacccatgagcatggagttgaatcagaggcattccaggtagatttgataaaaggaggaataaaagtccagtgtgtcatgagtgac |
37835387 |
T |
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| Q |
143 |
aacagagtcaaaccatcatagttaagagcagtagcaccatgcaaaaaggaaataatcaacaagtgtgt |
210 |
Q |
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| T |
37835386 |
aacagtatcaacccatcagaggtaagagtcaaaccactatgcaagaaggaaataatcaacaagagtgt |
37835319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 37821497 - 37821357
Alignment:
| Q |
89 |
ttccagctagagtcgatgataggaggaacaatggtccagtctgtcatgagtgacaacagagtcaaaccatcatagttaagagcagtagcaccatgcaaaa |
188 |
Q |
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| T |
37821497 |
ttccaactagagttgattagcggaggaacaaaggtccaacgtgtcaagagtgacatcaaagtcaaaccatcagaggtaagagcagtagcaccatagaaga |
37821398 |
T |
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| Q |
189 |
aggaaataat---caacaagtgtgtgataattctactgcta |
226 |
Q |
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| T |
37821397 |
aggaaataatcgacaacaagattgtgataattttactgcta |
37821357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 200
Target Start/End: Complemental strand, 36864251 - 36864093
Alignment:
| Q |
42 |
ggtcacatcgaacaccaacccatgagcatggattggaatcagaaggattccagctagagtcgatgataggaggaacaatggtccagtctgtcatgagtga |
141 |
Q |
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|||| ||| ||||||||| |||||| ||||||| ||||||||||| ||||||||||||| ||||| ||||||||||| |||||||| |||| |||||| |
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| T |
36864251 |
ggtcgcattgaacaccaaaccatgaacatggatcggaatcagaagccttccagctagagttgatgagaggaggaacaaaggtccagtgagtcaagagtga |
36864152 |
T |
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| Q |
142 |
caacagagtcaaaccatcatagttaagagcagtagcaccatgcaaaaaggaaataatca |
200 |
Q |
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| T |
36864151 |
caacaaagtcaacccataagagttaagagtaaaaccaccatgcaagaaggaaataatca |
36864093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 12281492 - 12281332
Alignment:
| Q |
43 |
gtcacatcgaacaccaacccatgagcatggattggaatcagaaggattccagctagagtcgatgataggaggaacaatggtccagtctgtcatgagtgac |
142 |
Q |
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| T |
12281492 |
gtcacattaaacaccaacccatgagcatggagttgaatcagaggcattccaggtggatttgataaaaggaggaataaaagtccagtgtgtcatgaatgac |
12281393 |
T |
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| Q |
143 |
aacagagtcaaaccatcatagttaagagcagtagcaccatgcaaaaaggaaataatcaaca |
203 |
Q |
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||||| |||| |||| | || |||||| | ||| |||||| |||||||||||||||| |
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| T |
12281392 |
aacagtatcaacccattagaggtaagagtcaaaccactatgcaagaaggaaataatcaaca |
12281332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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