View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_78 (Length: 209)
Name: NF20706_low_78
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 5304298 - 5304121
Alignment:
| Q |
15 |
gattattctattatggtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcaccttcttgacttctatcatatgcag |
114 |
Q |
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| T |
5304298 |
gattattctattatggtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcaccttcttgacttctatcatatgcag |
5304199 |
T |
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| Q |
115 |
gtatccaaattaattaaagacacattaaatttagctacataaacaaattaaactaccatatactagtatgtataaatt |
192 |
Q |
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| T |
5304198 |
gtatccaaattagttaaagacacattaaatttagctacataaacaaattaaactaccatatactagtatgtataaatt |
5304121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 29147062 - 29147201
Alignment:
| Q |
17 |
ttattctattatggtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcaccttcttgacttctatcatatgcaggt |
116 |
Q |
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| T |
29147062 |
ttattctattatggtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacctatttgcacattcttaacctctataatattcaggt |
29147161 |
T |
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| Q |
117 |
atccaaattaattaaagacacattaaatttagctacataa |
156 |
Q |
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| T |
29147162 |
atctaaattactttaagataaatttaatttagttacataa |
29147201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 29224593 - 29224492
Alignment:
| Q |
17 |
ttattctattatggtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcaccttcttgacttctatcatatgcaggt |
116 |
Q |
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| T |
29224593 |
ttattctattacggtcttcgagacacaactgctacttattccgtcaactttctcaacttggttcctatattgacattcttaacttctatcatatgcaggt |
29224494 |
T |
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| Q |
117 |
at |
118 |
Q |
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|| |
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| T |
29224493 |
at |
29224492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 38852170 - 38852097
Alignment:
| Q |
26 |
tatggtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcaccttcttgac |
99 |
Q |
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|||||| | |||||||||||||| || |||||| |||| ||||||||||| |||| || ||||| |||||||| |
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| T |
38852170 |
tatggtattcgagacacatctgccacatatgctctcaattttctcaacttaattcctatctgcacattcttgac |
38852097 |
T |
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