View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_8 (Length: 568)
Name: NF20706_low_8
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 15 - 556
Target Start/End: Original strand, 24238628 - 24239166
Alignment:
| Q |
15 |
atgcatgtcccggtgttggacacgtgtcgtgtccaacattaacacagacactgaattatgtgtgtccgggcgtgtctgtatccgtacttcatagttttgc |
114 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
24238628 |
atgcatgtcccagtgttggacacgtgtcgtgtccaacattaacaaagacactgaattatgtgt--ccgagcgtgtctgtatccgtacttcatagttttgc |
24238725 |
T |
|
| Q |
115 |
ccaatataaataaaaactggagaacaagagnnnnnnn--gaaactcacctaaaatggtaagaaccaagaccatgtttagaaccaaacttaaattcaccaa |
212 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24238726 |
ccaatataaataaaaactggagaacaagaagaaaaaaaagaaactcacctaaaatggtaagaaccaagaccatgtttagaaccaaacttaaattcaccaa |
24238825 |
T |
|
| Q |
213 |
cataacaacttccatcagaacaagattgaacaccaaaaccatgactttgtccattaaaccattccccagaataacaatcactagtataaaatctataaac |
312 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24238826 |
cataacaactcccatcagaacaagattgaacaccaaaaccatgactctgtccattaaaccattccccagaataacaatcaccagtataaaatctataaac |
24238925 |
T |
|
| Q |
313 |
accataaccatgtctcaaaccttgtttataacaacccttatatctacttcccctagcccagctttcaattccataaccatcatattttccatcaacccaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24238926 |
accataaccatgtctcaaaccttgtttataacaacccttatatctacttcccctagcccagctttcaattccataaccatcatattttccatcaacccaa |
24239025 |
T |
|
| Q |
413 |
tcaccttcatatcttccactcacataataatgataaactccacttccattacactttccaccgtgaaattctccttcgtagaaatcaccattgctgtaaa |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24239026 |
tcaccttcatatcttccactcacataataatgataaactccacttccattacactttccaccgtgaaattctccttcgtagaaatcaccattgctgtaaa |
24239125 |
T |
|
| Q |
513 |
attcaacttcaacgccttcttttaataacaaccctttcccgttc |
556 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||| ||||| |
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| T |
24239126 |
attcaacttcaacaccttcttt---taacaaccctttcacgttc |
24239166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 159 - 513
Target Start/End: Original strand, 32693506 - 32693860
Alignment:
| Q |
159 |
acctaaaatggtaagaaccaagaccatgtttagaaccaaacttaaattcaccaacataacaacttccatcagaacaagattgaacaccaaaaccatgact |
258 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| ||||| ||||||||| ||| |||||||||||| ||||| ||| | ||||||||| |
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| T |
32693506 |
acctaaaatggtaacaaccaagaccatgtttaacaccatgtttaaacatcccaacataagtactagcatcagaacaagtttgaagacccataccatgact |
32693605 |
T |
|
| Q |
259 |
ttgtccattaaaccattccccagaataacaatcactagtataaaatctataaacaccataaccatgtctcaaaccttgtttataacaacccttatatcta |
358 |
Q |
| |
|
||| |||||| ||||||| |||||| || |||||| |||||| || ||||||||||||||||||||||||| |||| | |||| ||||||||||||| |
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| T |
32693606 |
ttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacaccataaccatgtctcattccttttctatactgacccttatatcta |
32693705 |
T |
|
| Q |
359 |
cttcccctagcccagctttcaattccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacataataatgataaactccacttc |
458 |
Q |
| |
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|| || |||||||| || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| | |||| ||| || ||||||| |
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| T |
32693706 |
ctccctctagcccaactctcaattccatatccatcatatcttccatcaacccaatcaccttcatatcttccattcacaaagtaattatacacaccacttc |
32693805 |
T |
|
| Q |
459 |
cattacactttccaccgtgaaattctccttcgtagaaatcaccattgctgtaaaa |
513 |
Q |
| |
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| |||| |||| ||||| || |||||||| |||||||| ||||||||||| |
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|
| T |
32693806 |
cgttacttcttcctttatgaaactccccttcgtaaaaatcaccgttgctgtaaaa |
32693860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 4987252 - 4987284
Alignment:
| Q |
20 |
tgtcccggtgttggacacgtgtcgtgtccaaca |
52 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
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|
| T |
4987252 |
tgtcccggtgtcggacacgtgtcgtgtccaaca |
4987284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 176 - 456
Target Start/End: Original strand, 1586805 - 1587085
Alignment:
| Q |
176 |
ccaagaccatgtttagaaccaaacttaaattcaccaacataacaacttccatcagaacaagattgaacaccaaaaccatgactttgtccattaaaccatt |
275 |
Q |
| |
|
||||||||||||||| ||| ||||||| || |||||| | | ||| |||||| ||||| ||||||||| ||||||||| |||||||| ||||||| |
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|
| T |
1586805 |
ccaagaccatgtttaacaccccacttaaactctccaacaaatctactcccatcatcacaagtatgaacaccactaccatgactctgtccattcaaccatt |
1586904 |
T |
|
| Q |
276 |
ccccagaataacaatcactagtataaaatctataaacaccataaccatgtctcaaaccttgtttataacaacccttatatctacttcccctagcccagct |
375 |
Q |
| |
|
| |||| |||| ||| | |||||||||||||||||||||| | |||| |||||| || | | |||| ||||||||| ||||||||| || ||| || |
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|
| T |
1586905 |
caccagcataaacatctccagtataaaatctataaacaccaaacccatttctcaatccatctctatacatacccttatacctacttcccttactccaact |
1587004 |
T |
|
| Q |
376 |
ttcaattccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacataataatgataaactccact |
456 |
Q |
| |
|
|||| ||| |||| |||||||| || |||||||||| ||||||||||||||||||| || ||| | |||||| ||||| |
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|
| T |
1587005 |
ctcaacaccaaaaccttcatatttcccgtcaacccaattcccttcatatcttccactcatattatagtaataaaccccact |
1587085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 356 - 456
Target Start/End: Original strand, 41090290 - 41090390
Alignment:
| Q |
356 |
ctacttcccctagcccagctttcaattccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacataataatgataaactccac |
455 |
Q |
| |
|
|||||||| |||||||| |||||| ||| |||||||||| |||||||||| ||||||||||||| |||||||||||| || | |||||||||| |||| |
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| T |
41090290 |
ctacttcctctagcccacgtttcaacaccaaaaccatcatactttccatcaatccaatcaccttcaaatcttccactcatatgaaaatgataaacaccac |
41090389 |
T |
|
| Q |
456 |
t |
456 |
Q |
| |
|
| |
|
|
| T |
41090390 |
t |
41090390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 49431113 - 49431085
Alignment:
| Q |
20 |
tgtcccggtgttggacacgtgtcgtgtcc |
48 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
49431113 |
tgtcccggtgttggacacgtgtcgtgtcc |
49431085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 175 - 337
Target Start/End: Original strand, 17303535 - 17303697
Alignment:
| Q |
175 |
accaagaccatgtttagaaccaaacttaaattcaccaacataacaacttccatcagaacaagattgaacaccaaaaccatgactttgtccattaaaccat |
274 |
Q |
| |
|
|||||| ||||||||| ||| | |||||||| |||||||| | ||| ||||| ||||| |||||||| | |||||||| ||||||||| ||||| |
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|
| T |
17303535 |
accaaggccatgtttaacaccccatttaaattctccaacatatctactcccatcttcacaagtatgaacaccgcacccatgactctgtccattagaccat |
17303634 |
T |
|
| Q |
275 |
tccccagaataacaatcactagtataaaatctataaacaccataaccatgtctcaaaccttgt |
337 |
Q |
| |
|
|| |||| |||| ||| | ||||||||| |||||||||||| | ||||||||||| |||||| |
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|
| T |
17303635 |
tctccagtataaacatccccagtataaaacctataaacaccaaacccatgtctcaatccttgt |
17303697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 31385017 - 31384985
Alignment:
| Q |
20 |
tgtcccggtgttggacacgtgtcgtgtccaaca |
52 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
31385017 |
tgtcccggtgtaggacacgtgtcgtgtccaaca |
31384985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 40917847 - 40917815
Alignment:
| Q |
20 |
tgtcccggtgttggacacgtgtcgtgtccaaca |
52 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
40917847 |
tgtcccggtgtcggacacgtgtcgtgtccaaca |
40917815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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