View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20707_high_1 (Length: 527)
Name: NF20707_high_1
Description: NF20707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20707_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 34322913 - 34323223
Alignment:
| Q |
17 |
aattataataaatccttagataacagaatcagacaaaaaccggatacccctcccttaggtatatggtataataagctgaatataatcccctccaattatt |
116 |
Q |
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| T |
34322913 |
aattataatcaattcttagataacagaatcagacaaaaaccggatacccctcccttaggtatatggtataataagctgaatataatcccctccaattatt |
34323012 |
T |
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| Q |
117 |
gtggattacttttataatatttgctcttataattaagcatcatctttgtcacgctgcatttgatgtcactgaatgataacaagtatattacgttaattaa |
216 |
Q |
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| T |
34323013 |
gtggattacttttataatatttgctcttataattaagcatcacctttgtcacgctgcatttgatgtcactgaatgataacaagtatattacgttaattaa |
34323112 |
T |
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| Q |
217 |
ctaacaaacaaaacattttttaatggtttgaagtttcatacattttctttttaacaagtgaagttttatagattaatcattacacatctaataatataaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34323113 |
ctaacaaacaaaacattttttaatggtttgaagtttcatacattt--tttttaacaagtgaagttttatagattaatcatcacacatctaataatataaa |
34323210 |
T |
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| Q |
317 |
attacctcttatg |
329 |
Q |
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|||| |||||||| |
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| T |
34323211 |
attaactcttatg |
34323223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 443 - 527
Target Start/End: Complemental strand, 34323637 - 34323553
Alignment:
| Q |
443 |
ccaattgactcggtcaaaaggatacaactgcaaaatgtaaaatgtttcatattatgttcatctaccacatgaagcattttcagct |
527 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
34323637 |
ccaattgactcggtcaaaaggatacaactgcaacatgtaaaatgtttcatattatgctcatctaccacatgaagcactttcagct |
34323553 |
T |
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