View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20708_high_5 (Length: 254)
Name: NF20708_high_5
Description: NF20708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20708_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 62 - 243
Target Start/End: Original strand, 35282618 - 35282799
Alignment:
| Q |
62 |
caatcatgtatgtttctaagtttagatcctaatatccaacataatctcataggaatcaccaagtatttctactattctcactattttcccaataatagcc |
161 |
Q |
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| T |
35282618 |
caatcatgtatgtttctaagtttagatcctaatatccaacataatctcatatgaatcaccaagtatttctactattctcactattttcccaataataccc |
35282717 |
T |
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| Q |
162 |
aagaaaagtcttagcagcatccaaactaggaaaccaagtaggttcaagaaaaattctactcaaacattccaaattcatctca |
243 |
Q |
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| T |
35282718 |
aagaaaagtcttggcagcatccaagctaggaaaccaagtaggttcaagaaaaatcctactcaaacattccaaattcatctca |
35282799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35282544 - 35282577
Alignment:
| Q |
1 |
ttttggtacacctaatacaaaatttaatccacat |
34 |
Q |
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| T |
35282544 |
ttttggtacacctaatacaaaatttaatccacat |
35282577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 31472625 - 31472674
Alignment:
| Q |
160 |
ccaagaaaagtcttagcagcatccaaactaggaaaccaagtaggttcaag |
209 |
Q |
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| T |
31472625 |
ccaagaaaagtcttagcagcatccaagctaggaaagtaggtaggttcaag |
31472674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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