View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20708_low_1 (Length: 954)

Name: NF20708_low_1
Description: NF20708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20708_low_1
NF20708_low_1
[»] chr3 (37 HSPs)
chr3 (392-936)||(13592161-13592705)
chr3 (136-312)||(2213923-2214099)
chr3 (390-646)||(8772006-8772262)
chr3 (393-563)||(19165742-19165912)
chr3 (156-272)||(50296247-50296363)
chr3 (463-572)||(19577716-19577825)
chr3 (163-303)||(3266081-3266220)
chr3 (164-312)||(3401149-3401294)
chr3 (156-272)||(6247425-6247541)
chr3 (136-312)||(37023690-37023865)
chr3 (156-312)||(3256868-3257023)
chr3 (136-312)||(45580109-45580284)
chr3 (164-255)||(3260131-3260222)
chr3 (168-293)||(38261325-38261450)
chr3 (238-294)||(23428848-23428904)
chr3 (498-581)||(2776631-2776714)
chr3 (498-581)||(28328498-28328581)
chr3 (168-303)||(40630538-40630673)
chr3 (195-272)||(50297251-50297328)
chr3 (498-581)||(24126637-24126720)
chr3 (168-294)||(38262255-38262379)
chr3 (181-312)||(52986176-52986306)
chr3 (19-65)||(2214175-2214221)
chr3 (164-230)||(3266424-3266490)
chr3 (221-303)||(8339152-8339234)
chr3 (166-312)||(37087114-37087260)
chr3 (238-303)||(27852980-27853045)
chr3 (172-308)||(17341414-17341550)
chr3 (168-312)||(52985131-52985275)
chr3 (194-272)||(6248391-6248470)
chr3 (498-581)||(13556254-13556337)
chr3 (193-263)||(1834866-1834936)
chr3 (241-303)||(3328823-3328885)
chr3 (241-303)||(26628035-26628097)
chr3 (241-303)||(28154892-28154954)
chr3 (168-230)||(54578837-54578899)
chr3 (250-311)||(9434447-9434508)
[»] chr6 (22 HSPs)
chr6 (135-359)||(21843103-21843327)
chr6 (169-312)||(21844273-21844415)
chr6 (164-310)||(14455031-14455177)
chr6 (461-641)||(28587265-28587438)
chr6 (19-70)||(21843392-21843443)
chr6 (168-308)||(20891811-20891951)
chr6 (168-312)||(26444487-26444631)
chr6 (192-312)||(26444793-26444913)
chr6 (181-312)||(3488035-3488162)
chr6 (185-312)||(14456122-14456248)
chr6 (195-272)||(646757-646834)
chr6 (221-312)||(4370899-4370990)
chr6 (498-581)||(23381151-23381234)
chr6 (166-312)||(15976613-15976759)
chr6 (194-312)||(20583018-20583136)
chr6 (191-272)||(20583911-20583991)
chr6 (500-579)||(22958769-22958848)
chr6 (500-579)||(23829544-23829623)
chr6 (498-580)||(14793357-14793439)
chr6 (498-579)||(18140244-18140325)
chr6 (238-303)||(25819695-25819760)
chr6 (238-303)||(26710536-26710601)
[»] chr7 (26 HSPs)
chr7 (391-645)||(20580906-20581160)
chr7 (441-575)||(13251136-13251270)
chr7 (177-312)||(8955973-8956108)
chr7 (194-312)||(7314188-7314306)
chr7 (423-580)||(22523341-22523499)
chr7 (194-272)||(40659246-40659324)
chr7 (193-273)||(17353811-17353891)
chr7 (166-273)||(47507800-47507905)
chr7 (166-312)||(35960115-35960259)
chr7 (166-312)||(42337070-42337216)
chr7 (197-310)||(4436068-4436180)
chr7 (168-269)||(5450113-5450212)
chr7 (168-308)||(16957174-16957314)
chr7 (193-312)||(17352891-17353009)
chr7 (168-269)||(5441104-5441202)
chr7 (238-290)||(3562661-3562713)
chr7 (164-216)||(12384390-12384442)
chr7 (185-312)||(12385418-12385544)
chr7 (169-312)||(35959082-35959226)
chr7 (238-294)||(48176191-48176247)
chr7 (238-293)||(31493931-31493986)
chr7 (238-276)||(1920970-1921008)
chr7 (238-304)||(18754495-18754561)
chr7 (238-303)||(19195442-19195507)
chr7 (498-579)||(20594496-20594577)
chr7 (221-290)||(41452461-41452530)
[»] chr4 (31 HSPs)
chr4 (410-622)||(13130202-13130414)
chr4 (168-312)||(22813200-22813344)
chr4 (136-272)||(39701564-39701699)
chr4 (169-312)||(22812634-22812776)
chr4 (168-311)||(40841995-40842138)
chr4 (193-311)||(52035088-52035206)
chr4 (164-312)||(18704317-18704466)
chr4 (156-272)||(34370666-34370782)
chr4 (168-303)||(1961083-1961218)
chr4 (194-271)||(31182659-31182737)
chr4 (498-584)||(40117919-40118005)
chr4 (166-312)||(56113666-56113812)
chr4 (168-313)||(6047063-6047207)
chr4 (187-312)||(16217190-16217315)
chr4 (168-272)||(10616001-10616105)
chr4 (193-272)||(18667254-18667333)
chr4 (185-312)||(18703218-18703346)
chr4 (498-581)||(15404076-15404159)
chr4 (194-261)||(49700657-49700724)
chr4 (194-272)||(52034193-52034271)
chr4 (164-220)||(7035817-7035873)
chr4 (164-312)||(22098925-22099073)
chr4 (186-272)||(10614844-10614926)
chr4 (238-293)||(25011755-25011810)
chr4 (169-272)||(46171390-46171490)
chr4 (498-576)||(26061892-26061970)
chr4 (166-208)||(34155990-34156032)
chr4 (177-314)||(46170298-46170432)
chr4 (238-312)||(56112696-56112770)
chr4 (238-303)||(13397904-13397969)
chr4 (239-312)||(18705377-18705450)
[»] chr2 (25 HSPs)
chr2 (390-572)||(25533675-25533857)
chr2 (136-312)||(30796122-30796298)
chr2 (136-272)||(20126226-20126362)
chr2 (479-605)||(32442531-32442657)
chr2 (169-312)||(30793846-30793990)
chr2 (156-271)||(3453377-3453492)
chr2 (193-272)||(20127289-20127368)
chr2 (193-312)||(42702054-42702173)
chr2 (194-312)||(42700951-42701069)
chr2 (498-581)||(31429745-31429828)
chr2 (498-579)||(1505630-1505711)
chr2 (499-584)||(10530085-10530170)
chr2 (498-579)||(25871814-25871895)
chr2 (498-579)||(25958692-25958773)
chr2 (168-272)||(26068932-26069036)
chr2 (238-312)||(27848337-27848411)
chr2 (194-272)||(34386907-34386985)
chr2 (195-271)||(3454384-3454461)
chr2 (498-579)||(24236136-24236217)
chr2 (498-581)||(16789734-16789817)
chr2 (498-581)||(45454900-45454983)
chr2 (238-303)||(11175917-11175982)
chr2 (238-303)||(18538057-18538122)
chr2 (173-230)||(21004564-21004621)
chr2 (238-303)||(33076237-33076302)
[»] chr1 (21 HSPs)
chr1 (391-572)||(18828888-18829069)
chr1 (168-312)||(31376530-31376674)
chr1 (169-312)||(22778552-22778694)
chr1 (172-312)||(1531636-1531776)
chr1 (168-312)||(24033066-24033210)
chr1 (168-312)||(1532485-1532630)
chr1 (136-272)||(5971127-5971263)
chr1 (193-272)||(5972200-5972279)
chr1 (186-313)||(29183387-29183513)
chr1 (166-312)||(16276877-16277021)
chr1 (156-230)||(18964796-18964870)
chr1 (194-271)||(31377613-31377688)
chr1 (194-312)||(52142870-52142987)
chr1 (238-303)||(28920880-28920945)
chr1 (168-272)||(22776543-22776646)
chr1 (194-272)||(24037944-24038020)
chr1 (238-304)||(24196270-24196336)
chr1 (193-311)||(43914909-43915025)
chr1 (238-304)||(46432445-46432511)
chr1 (238-303)||(3616809-3616874)
chr1 (168-312)||(30106977-30107118)
[»] chr8 (26 HSPs)
chr8 (168-312)||(39688343-39688487)
chr8 (169-312)||(39688900-39689042)
chr8 (194-312)||(39581937-39582055)
chr8 (168-312)||(1192027-1192171)
chr8 (136-312)||(14054119-14054293)
chr8 (166-312)||(23754287-23754432)
chr8 (194-312)||(28301345-28301463)
chr8 (193-312)||(26830326-26830444)
chr8 (194-312)||(28301588-28301705)
chr8 (192-312)||(1190970-1191089)
chr8 (197-312)||(26831386-26831499)
chr8 (166-312)||(44297728-44297870)
chr8 (169-273)||(4376224-4376327)
chr8 (168-312)||(6572345-6572491)
chr8 (193-312)||(23753260-23753379)
chr8 (498-577)||(25593875-25593954)
chr8 (136-311)||(35562246-35562418)
chr8 (137-272)||(45518209-45518344)
chr8 (499-581)||(33879578-33879660)
chr8 (195-312)||(36985242-36985357)
chr8 (168-272)||(26363508-26363611)
chr8 (168-312)||(41774691-41774834)
chr8 (194-261)||(6571378-6571445)
chr8 (169-272)||(45519406-45519507)
chr8 (166-312)||(45021559-45021704)
chr8 (221-290)||(8802611-8802680)
[»] chr5 (19 HSPs)
chr5 (136-271)||(42876182-42876316)
chr5 (166-312)||(29993324-29993469)
chr5 (168-272)||(183102-183204)
chr5 (164-272)||(12949966-12950074)
chr5 (194-271)||(5014060-5014137)
chr5 (193-272)||(12948922-12949001)
chr5 (164-254)||(12935808-12935898)
chr5 (186-312)||(29352491-29352617)
chr5 (136-272)||(28223545-28223680)
chr5 (168-272)||(16793572-16793676)
chr5 (168-312)||(29353522-29353665)
chr5 (515-595)||(35668352-35668432)
chr5 (136-271)||(9070716-9070849)
chr5 (193-272)||(12934758-12934837)
chr5 (238-312)||(2023333-2023407)
chr5 (168-312)||(2024209-2024352)
chr5 (169-216)||(9071896-9071943)
chr5 (194-272)||(5015066-5015143)
chr5 (194-312)||(16228783-16228899)
[»] scaffold0203 (3 HSPs)
scaffold0203 (137-272)||(9603-9738)
scaffold0203 (137-272)||(14977-15112)
scaffold0203 (193-312)||(16043-16162)
[»] scaffold0050 (1 HSPs)
scaffold0050 (174-312)||(80928-81064)
[»] scaffold0827 (1 HSPs)
scaffold0827 (166-230)||(2442-2506)
[»] scaffold0151 (3 HSPs)
scaffold0151 (168-294)||(24825-24950)
scaffold0151 (168-294)||(37342-37467)
scaffold0151 (171-272)||(38278-38380)
[»] scaffold0008 (1 HSPs)
scaffold0008 (168-272)||(268452-268555)
[»] scaffold0446 (1 HSPs)
scaffold0446 (238-312)||(11562-11636)
[»] scaffold0179 (1 HSPs)
scaffold0179 (241-303)||(5660-5722)
[»] scaffold0419 (1 HSPs)
scaffold0419 (238-303)||(3189-3254)
[»] scaffold0176 (1 HSPs)
scaffold0176 (176-217)||(24647-24688)
[»] scaffold0043 (1 HSPs)
scaffold0043 (498-579)||(12352-12433)
[»] scaffold0024 (1 HSPs)
scaffold0024 (238-295)||(44051-44107)


Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 392 - 936
Target Start/End: Original strand, 13592161 - 13592705
Alignment:
Q  392 gttgcctccgattcagcgcttcttttacgtcttgagcccgacggttcccatgggtttcctcccatgcaacacttcatttgacgtctattagcttgacgcc 491  Q
    |||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  13592161 gttgcctctgattcagcacttcttttacgtcttgagcccaacggttcccatgggttgcctcccatgcaatacttcatttgacgtctattagcttgacgcc 13592260  T
Q  492 ttgatcctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcatagagtggtaag 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13592261 ttgatcctgttagggtggcctatatgaaagaaagaacacatcatcctccctttttctcttgttcggaaggaactccatgaatttggcatagagtggtaag 13592360  T
Q  592 tgttaacatcctcctatcaaaaggatttcagaatcaaagtctgttgttctctcagcttaaatgtaatttggcatagagggggaatgagcgcagcgcaccc 691  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13592361 tgttaacatcctcctatcaaaaggatttcataatcaaagtctgttgttctctcagcttaaatgtaatttggcatagagggggaatgagcgcagcgcaccc 13592460  T
Q  692 ctttgatatcaatttgcctaaacagaaacgcaacatcatgttttgttgattcttttgtgctaaatattgattcaccttttaattgattcacgtaaggctg 791  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13592461 ctttgatatcaatttgcctaaactgaaacgcaacatcatgttttgttgattcttttgtgctaaatattgattcaccttttaattgattcacgtaaggctg 13592560  T
Q  792 ttgctaattattgcacatattagttatacctacttgaattgcatcacataatttctactggtttggattcaattggaattattcattttgttcaatcggt 891  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13592561 ttgctaattattgcacatattagttatacctacttgaattgcatcacataatttctactggtttggattcaattggaattattcattttgttcaatcggt 13592660  T
Q  892 ggaaactcaacattgctgtaccaatcggtgaatcatatcccgttt 936  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13592661 ggaaactcaacattgctgtaccaatcggtgaatcatatcccgttt 13592705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 136 - 312
Target Start/End: Complemental strand, 2214099 - 2213923
Alignment:
Q  136 aaaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggt 235  Q
    |||||||||||||||||||||||| ||||||| |||| |||||| |||| |||||| |||||||||||||||||||||||| ||||||||||||| ||||    
T  2214099 aaaaatacacagctgtcaacttttgaaattatatggcatgacacgtaggcttgactaagtcaaaattggggttttgcaaaaggggctaaacatgaggggt 2214000  T
Q  236 gtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    | ||||||||||| ||||||| |||||| ||||||||  || | |  ||||||||||||| ||||||||||||||||    
T  2213999 ggcttttgccattttttttaatagggggtcaaaattgcaacttttgaaaacttagggggtcaaaagtgggtttaagc 2213923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 390 - 646
Target Start/End: Original strand, 8772006 - 8772262
Alignment:
Q  390 gggttgcctccgattcagcgcttcttttacgtcttgag-cccgacggttcccatgggtttcctcccatgcaacacttcatttgacgtctattagcttgac 488  Q
    ||||||||||| ||||| ||||| ||| || ||| ||| ||||| ||||||||||| || ||||||||||| | ||| || | ||   ||||||||  ||    
T  8772006 gggttgcctcccattcaacgcttgtttaacatct-gagtcccgaaggttcccatggattgcctcccatgcagcgctttatataacaattattagctcaac 8772104  T
Q  489 gccttgatcctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcatagagtggt 588  Q
    ||||  |||||||||||||||| ||||  ||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||||||||||||||||    
T  8772105 gcctcaatcctgttagggtggcttatacaaaagaaagaacacatcatctttcctctttctcttgtttggaaggaactccatgagtttggcatagagtggt 8772204  T
Q  589 aagtgttaacatcctcctatcaaaaggatttcagaatcaaagtctgttgttctctcag 646  Q
    ||||||| |||| |||| ||||  |||||||| ||||||| || |||| |||||||||    
T  8772205 aagtgttcacatgctcccatcagtaggatttctgaatcaatgtatgttcttctctcag 8772262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 393 - 563
Target Start/End: Complemental strand, 19165912 - 19165742
Alignment:
Q  393 ttgcctccgattcagcgcttcttttacgtcttgagcccgacggttcccatgggtttcctcccatgcaacacttcatttgacgtctattagcttgacgcct 492  Q
    |||||||| ||||| ||||  |||||||||||||||| ||  ||||||||||||| ||||||||||| | |||||||| ||||||||||||| |||| ||    
T  19165912 ttgcctcccattcatcgctctttttacgtcttgagcctgatagttcccatgggttgcctcccatgcagcgcttcatttaacgtctattagctcgacgact 19165813  T
Q  493 tgatcctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaa 563  Q
       |||||||||| || | | ||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  19165812 cagtcctgttaggctgacatgtataaaagaaagaacacatcatccttccttcttctcttgttcggaaggaa 19165742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 156 - 272
Target Start/End: Complemental strand, 50296363 - 50296247
Alignment:
Q  156 ttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattcttttta 255  Q
    |||| |||||| ||||| ||||||||||||||||||  |||||||||| |||||||||||| ||||||||||| | ||||  ||||||||||| ||||||    
T  50296363 tttttaaattaggtggcatgacacataggattgactgggtcaaaattgaggttttgcaaaaggggctaaacataaggggttacttttgccatttttttta 50296264  T
Q  256 aaagggggccaaaattg 272  Q
    | |||||||||||||||    
T  50296263 atagggggccaaaattg 50296247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 463 - 572
Target Start/End: Complemental strand, 19577825 - 19577716
Alignment:
Q  463 cttcatttgacgtctattagcttgacgccttgatcctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaagga 562  Q
    |||||||| ||||||||||||| ||||||   |||||||||||||||| || |||||||||||||||||  ||||||| | ||||||||||| || ||||    
T  19577825 cttcatttaacgtctattagctcgacgccccaatcctgttagggtggcttaaatgaaagaaagaacacacaatccttcttctttctcttgttagggagga 19577726  T
Q  563 actccatgaa 572  Q
    ||||||||||    
T  19577725 actccatgaa 19577716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 163 - 303
Target Start/End: Original strand, 3266081 - 3266220
Alignment:
Q  163 attatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggg 262  Q
    ||||||| ||||||||| ||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||| | |||| |||||||| |  |    
T  3266081 attatgtagcgtgacacgtaggattgactaaatcaaaattgaggttttgcaaaaagggctaaacatgaggggtgtctttggacatt-tttttaaatgatg 3266179  T
Q  263 gccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    | |||||| | ||||  ||||  |||||||||| |||||||    
T  3266180 gtcaaaatcgctacactttgatgcttagggggtcaaaagtg 3266220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 164 - 312
Target Start/End: Original strand, 3401149 - 3401294
Alignment:
Q  164 ttatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaaggggg 263  Q
    |||||||| ||||||| || |||||||  |||| ||||||||||||  ||||||||||||||||||| ||||||| |  |||||| |||||||||||||     
T  3401149 ttatgtggtgtgacacctatgattgaca-agtccaaattggggtttcccaaaaagggctaaacatgaggggtgtcctaggccatt-tttttaaaagggg- 3401245  T
Q  264 ccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||||||| ||||  |||| ||||||||||| ||||||| ||||||||    
T  3401246 ccaaaattgctacactttgatacttagggggtcaaaagtgcgtttaagc 3401294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 156 - 272
Target Start/End: Complemental strand, 6247541 - 6247425
Alignment:
Q  156 ttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattcttttta 255  Q
    |||| |||||| ||||| ||||||||||||||||||  |||||||||| ||||||||| || ||||||||||| | ||||  ||||||||||| ||||||    
T  6247541 tttttaaattaggtggcatgacacataggattgactgggtcaaaattgaggttttgcagaaggggctaaacataaggggtcacttttgccatttttttta 6247442  T
Q  256 aaagggggccaaaattg 272  Q
    | |||||| ||||||||    
T  6247441 atagggggtcaaaattg 6247425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 136 - 312
Target Start/End: Original strand, 37023690 - 37023865
Alignment:
Q  136 aaaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggt 235  Q
    |||||||||||| || ||| ||||||  ||| ||||| ||||||||||| |||||  |||||||||||| ||||||||||| ||| ||||||||| |||     
T  37023690 aaaaatacacagttggcaatttttaag-ttaagtggcatgacacataggtttgaccaagtcaaaattggtgttttgcaaaaggggttaaacatgaggggg 37023788  T
Q  236 g-tcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |  ||||||||||| ||||||| | |||||||||||||  || | |  ||||||||| ||| ||||||| ||||||||    
T  37023789 gaacttttgccattttttttaaca-ggggccaaaattgcaacttttgcaaacttaggaggtaaaaagtgtgtttaagc 37023865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 156 - 312
Target Start/End: Original strand, 3256868 - 3257023
Alignment:
Q  156 ttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattcttttta 255  Q
    |||||| ||||||||||||||||  || |||||||  | ||| ||||| ||||||| |||||||||||||||||| |||||||||| || ||| ||| ||    
T  3256868 ttttaatattatgtggcgtgacatgtatgattgaccaaatcataattgaggttttgtaaaaagggctaaacatgaggggtgtctttggcaatt-tttata 3256966  T
Q  256 aaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||  ||||||||| | ||||  |||| ||||||||||  ||||||| | ||||||    
T  3256967 aaagatggccaaaatcgctacactttgatacttagggggacaaaagtgagattaagc 3257023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 136 - 312
Target Start/End: Complemental strand, 45580284 - 45580109
Alignment:
Q  136 aaaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggt 235  Q
    ||||||||||||||| ||| |||| || ||| ||||| ||||||||||| |||||  ||||||||||  | ||||||||||   ||||||||||| |||     
T  45580284 aaaaatacacagctgacaattttttaagttaagtggcatgacacataggtttgaccaagtcaaaatt--gattttgcaaaagaagctaaacatgaggggg 45580187  T
Q  236 gtcttttgcca-ttctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    | ||||||||| || ||||||| ||| |||||||||||  || | |  |||||||||| || ||||||| ||||||||    
T  45580186 gacttttgccatttttttttaataggaggccaaaattgcaacttttgcaaacttagggagtaaaaagtgtgtttaagc 45580109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 255
Target Start/End: Original strand, 3260131 - 3260222
Alignment:
Q  164 ttatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattcttttta 255  Q
    ||||||||| |||||| |||||||||   | ||||||| | || ||||||||||||||||||||||| |||||||||| |||||| ||||||    
T  3260131 ttatgtggcttgacacgtaggattgatcaaatcaaaatcgaggatttgcaaaaagggctaaacatgaggggtgtctttggccatttttttta 3260222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 38261450 - 38261325
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    |||||||| |||||| | |||||| |||||||||||  ||||||||||| ||| || |||||  ||||  ||||||||||| ||||||| ||| ||||||    
T  38261450 gtggcgtgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccattttttttaataggtggccaa 38261351  T
Q  268 aattgttacatcttgaaacttagggg 293  Q
    |||||  || |||  |||||||||||    
T  38261350 aattgcaacttctgcaaacttagggg 38261325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 23428848 - 23428904
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttaggggg 294  Q
    ||||||||||| ||||||| |||||||||||||||| |||| |||||||||||||||    
T  23428848 cttttgccattttttttaatagggggccaaaattgtaacattttgaaacttaggggg 23428904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 498 - 581
Target Start/End: Complemental strand, 2776714 - 2776631
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcata 581  Q
    |||||||||||||  |||||| |||||||| | |||||||||| | || |||||||| || ||||| |||||||||||||||||    
T  2776714 ctgttagggtggcaaatatgatagaaagaatatatcatccttcttcttcctcttgtttggtaggaattccatgaatttggcata 2776631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 498 - 581
Target Start/End: Complemental strand, 28328581 - 28328498
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcata 581  Q
    |||||||||||||  |||||| |||||||| | |||||||||| | || |||||||| || ||||| |||||||||||||||||    
T  28328581 ctgttagggtggcaaatatgatagaaagaatatatcatccttcttcttcctcttgtttggtaggaattccatgaatttggcata 28328498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 303
Target Start/End: Original strand, 40630538 - 40630673
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    |||||||| |||||||| |||||| |||||||||||  ||||||||||| ||| || ||||   || |  ||||||| ||| ||||||| ||||||||||    
T  40630538 gtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagggggtagacataggggatcacttttgctattttttttaatagggggccaa 40630637  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtg 303  Q
    |||||  || | |  ||||||||||||| |||||||    
T  40630638 aattgcaacttttgcaaacttagggggtaaaaagtg 40630673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 50297251 - 50297328
Alignment:
Q  195 tcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattg 272  Q
    ||||||||| ||||||||| || ||||||||||| | ||||  ||||||||||| ||||||| | |||||||||||||    
T  50297251 tcaaaattgaggttttgcataaggggctaaacataaggggtcacttttgccattttttttaataaggggccaaaattg 50297328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 498 - 581
Target Start/End: Complemental strand, 24126720 - 24126637
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcata 581  Q
    |||||||||||||  |||||| |||||||| | |||||||||| | || |||||||| || ||||| ||||||||||| |||||    
T  24126720 ctgttagggtggcaaatatgatagaaagaatatatcatccttcttcttcctcttgtttggtaggaattccatgaattttgcata 24126637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 294
Target Start/End: Original strand, 38262255 - 38262379
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    ||||| || |||||| | |||||| ||| |||||||  ||||||||||| ||| ||||||||  ||||  |||||||| || ||||||| ||||||||||    
T  38262255 gtggcatgccacatatggttgactgagttaaaattgacgttttgcaaaagggggtaaacatg--gggtcacttttgcctttttttttaatagggggccaa 38262352  T
Q  268 aattgttacatcttgaaacttaggggg 294  Q
    |||||  || |||  ||||||||||||    
T  38262353 aattgcaacttctgcaaacttaggggg 38262379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 312
Target Start/End: Original strand, 52986176 - 52986306
Alignment:
Q  181 taggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatct 280  Q
    |||| |||||||||||||||||| | ||||| |||| ||| ||||||||| ||||   | || ||||| ||||||| |||||| ||||||||| || | |    
T  52986176 taggtttgacttagtcaaaattgagattttgtaaaagggggtaaacatgaggggtcattcttaccatt-tttttaatagggggtcaaaattgtaactttt 52986274  T
Q  281 tgaaacttagggggttaaaagtgggtttaagc 312  Q
      |||||||||| || ||||||| ||||||||    
T  52986275 acaaacttagggagtaaaaagtgtgtttaagc 52986306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 2214221 - 2214175
Alignment:
Q  19 ggtggtggtgtggtttggagaagaagctcacgtgtgcctctccaaat 65  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||||    
T  2214221 ggtggtggtgtggtttggggaagaagctcatgcgtgcctctccaaat 2214175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 3266424 - 3266490
Alignment:
Q  164 ttatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatga 230  Q
    ||||||| |||||||| |||| |||||  | |||||||||  |||||||||||||||||||||||||    
T  3266424 ttatgtgacgtgacacgtaggtttgaccaaatcaaaattgaagttttgcaaaaagggctaaacatga 3266490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 303
Target Start/End: Original strand, 8339152 - 8339234
Alignment:
Q  221 ctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    |||||||| | ||||  ||||||||||| ||||||| |||||||||||||||  |||| ||||||||||| |||  |||||||    
T  8339152 ctaaacataaggggtcacttttgccattttttttaatagggggccaaaattgcaacattttgaaacttagagggcgaaaagtg 8339234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 312
Target Start/End: Complemental strand, 37087260 - 37087114
Alignment:
Q  166 atgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggcc 265  Q
    ||||||| || |||||| | ||||||  |||||||| |  ||||||||||| |||  |||||||  ||||  ||||||||||| ||| ||| |||| |||    
T  37087260 atgtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatggggggtagcttttgccattttttctaatagggtgcc 37087161  T
Q  266 aaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||||  || | |  ||||||||||||| ||||||| ||||||||    
T  37087160 aaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagc 37087114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 27852980 - 27853045
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    ||||||||||| ||||||| |||||||||||||||  |||| ||||||||||| |||  |||||||    
T  27852980 cttttgccattttttttaatagggggccaaaattgcaacattttgaaacttagagggcgaaaagtg 27853045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 308
Target Start/End: Original strand, 17341414 - 17341550
Alignment:
Q  172 cgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaatt 271  Q
    |||| |||||| | |||||| |||||||||||  ||||||||||| ||| || |||||  ||||  |||||  |||| ||||||| |||||| |||||||    
T  17341414 cgtgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttatcattttttttaatagggggtcaaaatt 17341513  T
Q  272 gttacatcttgaaacttagggggttaaaagtgggttt 308  Q
    |  || |||  ||||||||||||  ||||||| ||||    
T  17341514 gcaacttctgcaaacttagggggcaaaaagtgcgttt 17341550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 312
Target Start/End: Complemental strand, 52985275 - 52985131
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    ||||| || |||||| | |||||| ||||||| ||| |||||||||||| ||| ||| ||||  || |   |||| ||||| ||||||| ||||| ||||    
T  52985275 gtggcatggcacataagcttgactaagtcaaagttgaggttttgcaaaaggggataatcatgggggatcatttttaccattttttttaataggggaccaa 52985176  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||| || | |  |||||||| |||| ||||||| ||||||||    
T  52985175 aattgtaacttttacaaacttagagggtaaaaagtgtgtttaagc 52985131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 6248391 - 6248470
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgcca-ttctttttaaaagggggccaaaattg 272  Q
    |||||||||| ||||||||| || ||||||| ||| | ||||  ||||||||| || ||||||| |||||||||||||||    
T  6248391 gtcaaaattgaggttttgcagaaggggctaaccataaggggtcacttttgccatttttttttaatagggggccaaaattg 6248470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 581
Target Start/End: Complemental strand, 13556337 - 13556254
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcata 581  Q
    |||||||||||||  |||||| | |||||| | |||||||||| | || |||||| | || ||||| |||||||||||||||||    
T  13556337 ctgttagggtggcaaatatgatataaagaagatatcatccttcttcttcctcttggttggtaggaattccatgaatttggcata 13556254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 1834936 - 1834866
Alignment:
Q  193 agtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaaggggg 263  Q
    |||||||||||  |||||  |||| |||||||| |||| ||||| ||||||||||| |||| |||||||||    
T  1834936 agtcaaaattgatgttttataaaatgggctaaatatgaggggtgacttttgccatttttttgaaaaggggg 1834866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 3328885 - 3328823
Alignment:
Q  241 ttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    |||| ||| ||||||| |||||||||||||||| |||| ||||||| |||||||  |||||||    
T  3328885 ttgctattttttttaatagggggccaaaattgtaacattttgaaacatagggggcgaaaagtg 3328823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 26628097 - 26628035
Alignment:
Q  241 ttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    |||||||| ||||||| |||||||||||||||  |||| ||||||| |||||||  |||||||    
T  26628097 ttgccattttttttaatagggggccaaaattgcaacattttgaaacatagggggcgaaaagtg 26628035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 28154954 - 28154892
Alignment:
Q  241 ttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    |||||||| ||||||| |||||||||||||||  |||| ||||||| |||||||  |||||||    
T  28154954 ttgccattttttttaatagggggccaaaattgcaacattttgaaacatagggggcgaaaagtg 28154892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 54578899 - 54578837
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatga 230  Q
    ||||| ||| ||||||| || ||| ||||||||||||| |||||||| | |||||||||||||    
T  54578899 gtggcatgaaacataggcttcactaagtcaaaattgggattttgcaagaggggctaaacatga 54578837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 9434508 - 9434447
Alignment:
Q  250 tttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaag 311  Q
    ||||||| ||||||||||||||| ||| | |  |||||||| |||| |||||||||||||||    
T  9434508 tttttaatagggggccaaaattgctacttttgcaaacttagagggtgaaaagtgggtttaag 9434447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 135 - 359
Target Start/End: Complemental strand, 21843327 - 21843103
Alignment:
Q  135 gaaaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaaggg 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||  |||||||||||||    
T  21843327 gaaaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgatttagtcaaaattggggttttgctaaagggagtaaacatgaaggg 21843228  T
Q  235 tgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaagcaacagaaaaaatacagaaattg 334  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21843227 tgtcttttgccattctttttaaaagggggccaaaattgctacatcttgaaacttaggggattaaaagtgggtttaagcaacagaaaaaatacagaaattg 21843128  T
Q  335 attagtcatattatattagcttagc 359  Q
    |||||||| || |||||||||||||    
T  21843127 attagtcagatcatattagcttagc 21843103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 169 - 312
Target Start/End: Original strand, 21844273 - 21844415
Alignment:
Q  169 tggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaa 268  Q
    ||||| ||||||||||||||||  ||||||||||||| ||||||||||  | |||||||||  ||||||||||||||||| |||||||||||| ||||||    
T  21844273 tggcgagacacataggattgaccaagtcaaaattgggattttgcaaaagagactaaacatggggggtgtcttttgccatt-tttttaaaagggagccaaa 21844371  T
Q  269 attgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    || | |||||  ||||||||||||||| ||||||||||||||||    
T  21844372 atcgctacattatgaaacttagggggtcaaaagtgggtttaagc 21844415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 164 - 310
Target Start/End: Complemental strand, 14455177 - 14455031
Alignment:
Q  164 ttatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaaggggg 263  Q
    ||||||||| ||||||||||| |||||| ||||||||||| |||||||||||| |||  |||||||||||||   |||||||||| ||||||| ||||||    
T  14455177 ttatgtggcatgacacataggcttgactaagtcaaaattgaggttttgcaaaagggggcaaacatgaagggtcatttttgccattttttttaataggggg 14455078  T
Q  264 ccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaa 310  Q
    ||||||||| ||| | | |||||||||||| | || |||| ||||||    
T  14455077 ccaaaattgctacttttagaaacttaggggataaatagtgcgtttaa 14455031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 461 - 641
Target Start/End: Complemental strand, 28587438 - 28587265
Alignment:
Q  461 cacttcatttgacgtctattagcttgacgccttgatcctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaag 560  Q
    |||||||||| ||||||||||||| |||||||  |||||||||||||||| ||||||||||| ||||||||       |||| || |||||||| |||||    
T  28587438 cacttcatttaacgtctattagctcgacgcctcaatcctgttagggtggcttatatgaaagagagaacaca-------tcctcttcctcttgttgggaag 28587346  T
Q  561 gaactccatgaatttggcatagagtggtaagtgttaacatcctcctatcaaaaggatttcagaatcaaagtctgttgttct 641  Q
    ||  | |||||||||||||||||  | |||||||| |||| |||| ||| | || ||||||||||||| |||  |||||||    
T  28587345 gatgttcatgaatttggcatagatagttaagtgttcacatgctcccatccatagtatttcagaatcaatgtcatttgttct 28587265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 21843443 - 21843392
Alignment:
Q  19 ggtggtggtgtggtttggagaagaagctcacgtgtgcctctccaaattaccc 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21843443 ggtggtggtgtggtttggagaagaagctcacgtgtgcctctccaaattaccc 21843392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 168 - 308
Target Start/End: Complemental strand, 20891951 - 20891811
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    |||||||| |||||| | |||||| |||||||||||  ||||||||||| ||| || |||||  ||||  ||||||||||| ||||||| ||||||||||    
T  20891951 gtggcgtgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccattttttttaatagggggccaa 20891852  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggttt 308  Q
    |||||  || |||  ||||||||||||  ||||||| ||||    
T  20891851 aattgcaacttctgcaaacttagggggcaaaaagtgtgttt 20891811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 168 - 312
Target Start/End: Complemental strand, 26444631 - 26444487
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    ||||| || |||||| | ||||||  |||||||||| | |||||||||| | | ||||||||  ||||  ||||||||||| ||||||| ||||||||||    
T  26444631 gtggcatgccacatatggttgactgggtcaaaattgagcttttgcaaaaggaggtaaacatggggggtcacttttgccattttttttaatagggggccaa 26444532  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||| ||| | |  |||||||| |||| |||||| |||||||||    
T  26444531 aattgctacttttgcaaacttagagggtgaaaagtaggtttaagc 26444487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 192 - 312
Target Start/End: Original strand, 26444793 - 26444913
Alignment:
Q  192 tagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagg 291  Q
    |||||||||||| | |||||||||| ||| ||||||||  ||||  ||||||||||| ||||||| ||||||  ||||||| ||| | |  ||||||||     
T  26444793 tagtcaaaattgagcttttgcaaaagggggtaaacatggggggtcgcttttgccattttttttaatagggggttaaaattgctacttttgcaaacttaga 26444892  T
Q  292 gggttaaaagtgggtttaagc 312  Q
    |||| ||||||||||||||||    
T  26444893 gggtgaaaagtgggtttaagc 26444913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 312
Target Start/End: Complemental strand, 3488162 - 3488035
Alignment:
Q  181 taggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatct 280  Q
    ||||||||||  |||||||||||  ||||||||||||||| ||||||||  ||||  ||||||||||| ||||||||||||| ||||||||  ||| | |    
T  3488162 taggattgacaaagtcaaaattgaagttttgcaaaaaggg-taaacatg--gggtcacttttgccatt-tttttaaaaggggaccaaaatttctactttt 3488067  T
Q  281 tgaaacttagggggttaaaagtgggtttaagc 312  Q
      ||||||||||| | ||||||| ||||||||    
T  3488066 gcaaacttaggggataaaaagtgcgtttaagc 3488035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 312
Target Start/End: Original strand, 14456122 - 14456248
Alignment:
Q  185 attgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaa 284  Q
    |||||||||||||||||||   ||||| |||| ||| ||||||| | ||||  ||||||||||| ||||||| | |||||||||||||| || | |  ||    
T  14456122 attgacttagtcaaaattgaaattttgtaaaagggggtaaacattaggggtcacttttgccattttttttaata-ggggccaaaattgtaacttttgcaa 14456220  T
Q  285 acttagggggttaaaagtgggtttaagc 312  Q
    |||| |||||| ||||||| ||||||||    
T  14456221 actttgggggtaaaaagtgcgtttaagc 14456248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 646757 - 646834
Alignment:
Q  195 tcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattg 272  Q
    ||||||||||| |||||||||| ||| |||||||| |||||  |||||||| || |||||||||||| || |||||||    
T  646757 tcaaaattgggattttgcaaaatggggtaaacatggagggtcccttttgcctttttttttaaaagggagctaaaattg 646834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 4370990 - 4370899
Alignment:
Q  221 ctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||||||| |||||  ||||||||||| ||||||||||| ||||||||| | ||| | |  ||||||||||||| || |||| ||||||||    
T  4370990 ctaaacatggagggtcacttttgccattttttttaaaaggaggccaaaatcgctacttttgcaaacttagggggtgaatagtgcgtttaagc 4370899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 498 - 581
Target Start/End: Original strand, 23381151 - 23381234
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcata 581  Q
    |||||||||||||  |||||| | |||||| | |||||||||| | || |||||||| || ||||| |||||||||||||||||    
T  23381151 ctgttagggtggcaaatatgatataaagaagatatcatccttcttcttcctcttgtttggtaggaattccatgaatttggcata 23381234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 312
Target Start/End: Complemental strand, 15976759 - 15976613
Alignment:
Q  166 atgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggcc 265  Q
    ||||||| || |||||| | ||||||  ||||||||||   |||||||||| |||  |||||||  ||||  ||||||||||| ||||||| |||| | |    
T  15976759 atgtggcatgccacatatggttgactcggtcaaaattgacattttgcaaaagggggaaaacatggggggtagcttttgccattttttttaatagggtgtc 15976660  T
Q  266 aaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||||  || | |  ||||||||||||| ||||||| ||||||||    
T  15976659 aaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagc 15976613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 312
Target Start/End: Complemental strand, 20583136 - 20583018
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggg 293  Q
    ||||||||||  ||||| ||||| ||| ||| ||||| ||||  ||||||||||| ||||||| |||||| ||||||||  || | |  |||||||||||    
T  20583136 gtcaaaattgaagttttacaaaaggggataatcatgaggggtcacttttgccattttttttaatagggggtcaaaattgcaacttttccaaacttagggg 20583037  T
Q  294 gttaaaagtgggtttaagc 312  Q
     | ||||||| ||||||||    
T  20583036 ataaaaagtgtgtttaagc 20583018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 20583911 - 20583991
Alignment:
Q  191 ttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattg 272  Q
    |||||||||||||| ||||||||||| | | |||| |||| ||||  ||||||||||| ||||||| |||||| ||||||||    
T  20583911 ttagtcaaaattggagttttgcaaaaggag-taaatatgaggggtcacttttgccattttttttaatagggggtcaaaattg 20583991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 579
Target Start/End: Complemental strand, 22958848 - 22958769
Alignment:
Q  500 gttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggca 579  Q
    |||||||||||  | ||||||||||||| | ||||||| || | || |||||||| || ||||| |||||||||||||||    
T  22958848 gttagggtggcaaaaatgaaagaaagaatatatcatccatcttcttcctcttgtttggtaggaattccatgaatttggca 22958769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 579
Target Start/End: Original strand, 23829544 - 23829623
Alignment:
Q  500 gttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggca 579  Q
    |||||||||||  | ||||||||||||| | ||||||| || | || |||||||| || ||||| |||||||||||||||    
T  23829544 gttagggtggcaaaaatgaaagaaagaatatatcatccatcttcttcctcttgtttggtaggaattccatgaatttggca 23829623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 498 - 580
Target Start/End: Complemental strand, 14793439 - 14793357
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcat 580  Q
    |||||||||||||  | |||| |||||||| | |||||||||| | || |||||||| || ||||| |||||||| |||||||    
T  14793439 ctgttagggtggcaaaaatgatagaaagaatatatcatccttcttcttcctcttgtttggcaggaattccatgaacttggcat 14793357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 579
Target Start/End: Original strand, 18140244 - 18140325
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggca 579  Q
    |||||||||||||  | || | |||||||| | |||||||||| | || |||||||| || ||||| |||||||||||||||    
T  18140244 ctgttagggtggcaaaaattatagaaagaatatatcatccttcttcttcctcttgtttggtaggaattccatgaatttggca 18140325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 25819760 - 25819695
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    ||||||||||| ||||||| |||||||||||||||  |||| || |||||||| |||  |||||||    
T  25819760 cttttgccattttttttaatagggggccaaaattgcaacattttaaaacttagagggcgaaaagtg 25819695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 26710536 - 26710601
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    ||||||||||| ||||||| ||||||||||||| |  |||| ||||||||||| |||  |||||||    
T  26710536 cttttgccattttttttaatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtg 26710601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 1e-74; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 391 - 645
Target Start/End: Original strand, 20580906 - 20581160
Alignment:
Q  391 ggttgcctccgattcagcgcttcttttacgtcttgagcccgacggttcccatgggtttcctcccatgcaacacttcatttgacgtctattagcttgacgc 490  Q
    |||||| ||| | |||||||||||||||||| |||| ||||| |||| |||||||||  | |||||||| | || ||||| ||||||||||||| ||| |    
T  20580906 ggttgcatcctactcagcgcttcttttacgtattgatcccgatggtttccatgggttgtcgcccatgcatcgctccatttaacgtctattagctcgaccc 20581005  T
Q  491 cttgatcctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcatagagtggtaa 590  Q
    ||||||| | |||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  20581006 cttgatcatcttagggtggcctgtatgaaagaaagaacacatcaaccttcctctttctcttgttcggaaggaactccatgaatttgacatagagtggtaa 20581105  T
Q  591 gtgttaacatcctcctatcaaaaggatttcagaatcaaagtctgttgttctctca 645  Q
    ||||| ||||||| | |||||||||||||||||||||||   |||||||||||||    
T  20581106 gtgttcacatccttccatcaaaaggatttcagaatcaaatcatgttgttctctca 20581160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 441 - 575
Target Start/End: Complemental strand, 13251270 - 13251136
Alignment:
Q  441 atgggtttcctcccatgcaacacttcatttgacgtctattagcttgacgccttgatcctgttagggtggcctatatgaaagaaagaacacatcatccttc 540  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||| ||| ||| |||||| ||| |||||| ||||||||| |||||||||||||||||||    
T  13251270 atgggttgcctcccatgcagcgcttcatttaacgtctattagctcgacacctcgatcctattacggtggcttatatgaaataaagaacacatcatccttc 13251171  T
Q  541 ctttttctcttgttcggaaggaactccatgaattt 575  Q
    || ||||||||||| ||||||||||||||||||||    
T  13251170 ctctttctcttgtttggaaggaactccatgaattt 13251136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 177 - 312
Target Start/End: Complemental strand, 8956108 - 8955973
Alignment:
Q  177 cacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttac 276  Q
    |||||||| |||||| | |||||||||| ||||||||||| ||| ||||| || |||| |||||| |||||| ||||||| ||||||||||||| | |||    
T  8956108 cacataggtttgactaaatcaaaattggtgttttgcaaaaggggttaaacttggagggggtctttggccattttttttaatagggggccaaaatcgctac 8956009  T
Q  277 atcttgaaacttagggggttaaaagtgggtttaagc 312  Q
     | || ||| ||||||||| ||||||||||||||||    
T  8956008 ttttttaaatttagggggtcaaaagtgggtttaagc 8955973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 194 - 312
Target Start/End: Original strand, 7314188 - 7314306
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggg 293  Q
    |||||||||| ||||||| |||| ||| |||||||| |||||  ||||||||||| |||||||||||||||||||||||  || | |  |||||||||||    
T  7314188 gtcaaaattgaggttttgtaaaaggggataaacatggagggtcacttttgccattttttttaaaagggggccaaaattgcaacttttgcaaacttagggg 7314287  T
Q  294 gttaaaagtgggtttaagc 312  Q
    || ||||||| ||||||||    
T  7314288 gtaaaaagtgtgtttaagc 7314306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 423 - 580
Target Start/End: Complemental strand, 22523499 - 22523341
Alignment:
Q  423 ttgagcccgacggttcccatgggtttcctcccatgcaacacttcatttgacgtctattagcttgacgccttgatc-ctgttagggtggcctatatgaaag 521  Q
    ||||||| ||||| || |||||||| |||||||||||||||||  ||| ||||||||||| ||| |||||  | | ||||||||||||| | ||||||||    
T  22523499 ttgagcctgacggatctcatgggttgcctcccatgcaacactttgtttaacgtctattagtttgtcgcctcaaccactgttagggtggcttgtatgaaag 22523400  T
Q  522 aaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcat 580  Q
    ||| |||| ||| ||||||||| | |||||||| || ||||  | ||||||||||||||    
T  22523399 aaataacatatcctccttccttctcctcttgtttggtaggatgttcatgaatttggcat 22523341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 40659246 - 40659324
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattg 272  Q
    ||||||||||| ||||||||||| |||||||||||||||||   ||||||||||| ||||||||||||||| |||||||    
T  40659246 gtcaaaattggagttttgcaaaatgggctaaacatgaagggccacttttgccattttttttaaaagggggctaaaattg 40659324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 17353811 - 17353891
Alignment:
Q  193 agtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgt 273  Q
    |||||||||||| ||||||||||| ||| ||||||||| ||||  ||||||||||| ||||||| ||||||||||||||||    
T  17353811 agtcaaaattggagttttgcaaaagggggtaaacatgaggggtcacttttgccattttttttaatagggggccaaaattgt 17353891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 166 - 273
Target Start/End: Complemental strand, 47507905 - 47507800
Alignment:
Q  166 atgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggcc 265  Q
    ||||||||||||||||||| ||||||   ||||||||| |||||||||||| ||| ||||||||  ||||  |||||| |||| ||||||||||||| ||    
T  47507905 atgtggcgtgacacataggcttgactacatcaaaattgaggttttgcaaaagggggtaaacatg--gggtcacttttggcattttttttaaaaggggacc 47507808  T
Q  266 aaaattgt 273  Q
    ||||||||    
T  47507807 aaaattgt 47507800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 166 - 312
Target Start/End: Original strand, 35960115 - 35960259
Alignment:
Q  166 atgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggcc 265  Q
    |||||||||| ||  |||| |||||  |||||||||||  ||||||||||| ||||||||||||  ||||  ||||||||||| ||||||| |||||||     
T  35960115 atgtggcgtgccatgtaggcttgaccaagtcaaaattgacgttttgcaaaaggggctaaacatg--gggtcacttttgccattttttttaatagggggct 35960212  T
Q  266 aaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||||  || | |  ||| ||||||||| ||||||||||||||||    
T  35960213 aaaattgcaacttttgcaaaattagggggtaaaaagtgggtttaagc 35960259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 312
Target Start/End: Complemental strand, 42337216 - 42337070
Alignment:
Q  166 atgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggcc 265  Q
    ||||||| || |||||| | ||||||  |||||||||||  |||||||||| |||  |||||||  ||||  ||||||||||| ||||||| |||| |||    
T  42337216 atgtggcatgccacatatggttgactcggtcaaaattggcattttgcaaaagggggaaaacatggggggtagcttttgccattttttttaatagggtgcc 42337117  T
Q  266 aaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||||  || | |  ||||||||||||| ||||||| ||||||||    
T  42337116 aaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagc 42337070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 310
Target Start/End: Original strand, 4436068 - 4436180
Alignment:
Q  197 aaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggtt 296  Q
    |||||||| ||||||||||| |||||||||||||  |||| ||||||||||| ||||||||| | ||||||||| | ||| | || ||||||| |||||     
T  4436068 aaaattggtgttttgcaaaa-gggctaaacatgagaggtgacttttgccattttttttaaaaagcggccaaaatcgctactttttaaaacttaaggggta 4436166  T
Q  297 aaaagtgggtttaa 310  Q
    |||| || ||||||    
T  4436167 aaaattgtgtttaa 4436180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 5450113 - 5450212
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    ||||| ||||||||| | ||||||  |||||||||| |||||||||||| | | |||||||||| |||  ||||||||||| ||||||||||||||||||    
T  5450113 gtggcatgacacatatggttgactaggtcaaaattgaggttttgcaaaaggaggtaaacatgaa-ggtcacttttgccatt-tttttaaaagggggccaa 5450210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 308
Target Start/End: Original strand, 16957174 - 16957314
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    |||||||| ||||| || ||||||  ||||||||||  ||||||||||| ||| |||||||   || |  ||||||||||| ||||||| ||||||||||    
T  16957174 gtggcgtgccacatggggttgactgggtcaaaattgacgttttgcaaaagggggtaaacataggggatcacttttgccattttttttaatagggggccaa 16957273  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggttt 308  Q
    |||||  || | |  ||||||||||||| ||||||| ||||    
T  16957274 aattgcaacttttgcaaacttagggggtaaaaagtgcgttt 16957314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 312
Target Start/End: Complemental strand, 17353009 - 17352891
Alignment:
Q  193 agtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttaggg 292  Q
    |||||||||||| ||||||||||| ||| ||||||||| ||||  ||||| ||||| ||||||| |||| |||||||||   || | |  ||||||||||    
T  17353009 agtcaaaattggagttttgcaaaagggggtaaacatgaggggtcacttttaccatt-tttttaatagggcgccaaaattacaacttttgcaaacttaggg 17352911  T
Q  293 ggttaaaagtgggtttaagc 312  Q
    | | ||||||| ||||||||    
T  17352910 gataaaaagtgtgtttaagc 17352891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 5441104 - 5441202
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    ||||| ||||||||| | ||||||  |||||||||| |||||||| ||| | | |||||||||| |||  ||||||||||| ||||||||||||||||||    
T  5441104 gtggcatgacacatatggttgactaggtcaaaattgaggttttgc-aaaggaggtaaacatgaa-ggtcacttttgccatt-tttttaaaagggggccaa 5441200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 3562661 - 3562713
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttag 290  Q
    ||||||||||| ||||||| ||||||||||||| || |||| |||||||||||    
T  3562661 cttttgccattttttttaatagggggccaaaatcgtaacattttgaaacttag 3562713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 12384442 - 12384390
Alignment:
Q  164 ttatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaa 216  Q
    ||||||||| ||||||||||| |||||| ||||||||||| ||||||| ||||    
T  12384442 ttatgtggcatgacacataggtttgactaagtcaaaattgaggttttgaaaaa 12384390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 312
Target Start/End: Original strand, 12385418 - 12385544
Alignment:
Q  185 attgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttg-a 283  Q
    ||||||||||||||||||||  ||||| |||| ||| ||||||| | ||||  |||||| |||| ||||||| | |||||||||| ||| |  | ||| |    
T  12385418 attgacttagtcaaaattggaattttgtaaaagggggtaaacattaggggtcacttttgtcattttttttaata-ggggccaaaa-tgtcaacttttgta 12385515  T
Q  284 aacttagggggttaaaagtgggtttaagc 312  Q
    |||||||||||| ||||||| ||||||||    
T  12385516 aacttagggggtaaaaagtgcgtttaagc 12385544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 312
Target Start/End: Complemental strand, 35959226 - 35959082
Alignment:
Q  169 tggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgcca-ttctttttaaaagggggccaa 267  Q
    |||||||||| ||||| ||||   |||||||||| | ||||||||||| |||||||||||  || ||  ||||||||| || ||||||| | ||| ||||    
T  35959226 tggcgtgacagataggcttgatcaagtcaaaattagtgttttgcaaaaggggctaaacatagagtgttacttttgccatttttttttaataagggaccaa 35959127  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||  || | |  ||||||||||||  ||||||| ||||||||    
T  35959126 aattgcaacctttgcaaacttagggggcgaaaagtgagtttaagc 35959082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 48176191 - 48176247
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttaggggg 294  Q
    ||||||||||| ||||||| ||||||||||||| |  |||| |||||||||||||||    
T  48176191 cttttgccattttttttaatagggggccaaaatcgcaacattttgaaacttaggggg 48176247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 31493986 - 31493931
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggg 293  Q
    ||||||||||| || |||| ||||||||||||| || |||| ||||||||||||||    
T  31493986 cttttgccatttttgttaatagggggccaaaatcgtaacattttgaaacttagggg 31493931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 276
Target Start/End: Complemental strand, 1921008 - 1920970
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttac 276  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  1921008 cttttgccattttttttaatagggggccaaaattgttac 1920970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 18754495 - 18754561
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgg 304  Q
    ||||||||||| ||||||| ||||| ||||||| |  |||| |||||||||||||||  ||||||||    
T  18754495 cttttgccattttttttaataggggaccaaaatcgcaacattttgaaacttagggggcgaaaagtgg 18754561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 19195442 - 19195507
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    ||||||||||| ||||||| |||||| ||||||||  |||| || |||||||| |||| |||||||    
T  19195442 cttttgccattttttttaatagggggtcaaaattgcaacattttaaaacttagagggtgaaaagtg 19195507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 579
Target Start/End: Complemental strand, 20594577 - 20594496
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggca 579  Q
    |||||||||||||  | |||| |||||||| |  ||||||||| | || |||||||| || ||||| |||||||||||||||    
T  20594577 ctgttagggtggcaaaaatgatagaaagaatatgtcatccttcttcttcctcttgtttggtaggaattccatgaatttggca 20594496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 41452461 - 41452530
Alignment:
Q  221 ctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttag 290  Q
    |||||||| | ||||  ||||||||||| ||||||| ||||||||||||||   |||| |||||||||||    
T  41452461 ctaaacataaggggtcacttttgccattttttttaatagggggccaaaattacaacattttgaaacttag 41452530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 3e-66; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 410 - 622
Target Start/End: Complemental strand, 13130414 - 13130202
Alignment:
Q  410 cttcttttacgtcttgagcccgacggttcccatgggtttcctcccatgcaacacttcatttgacgtctattagcttgacgccttgatcctgttagggtgg 509  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||| |||||||| ||||||| |||||| |||||||||    
T  13130414 cttcttttacgtcttgagcccgacggttcccatggattgcctcccatgcaacacttcattttacgtttattagctcgacgcctcgatcctcttagggtgg 13130315  T
Q  510 cctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcatagagtggtaagtgttaacatcctcctatc 609  Q
    | | ||||||||||||||||||||||||||| | ||||||||||||  ||||||||||||||||||||||  |||  ||||||||| |||| |||| |||    
T  13130314 cttgtatgaaagaaagaacacatcatccttcatctttctcttgttcaaaaggaactccatgaatttggcaaggagaagtaagtgttcacatgctcccatc 13130215  T
Q  610 aaaaggatttcag 622  Q
    | |||||||||||    
T  13130214 ataaggatttcag 13130202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 168 - 312
Target Start/End: Original strand, 22813200 - 22813344
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    |||||| ||||||||||||||||  |||||| ||||| || || ||||| ||| ||||||||| ||||||||||||||||| ||||||| ||||| ||||    
T  22813200 gtggcgagacacataggattgaccaagtcaagattggagtattacaaaaggggttaaacatgaggggtgtcttttgccattttttttaataggggaccaa 22813299  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||  || | |  ||||||| | ||| ||||||||||||||||    
T  22813300 aattgcaacttttgcaaacttaagaggtcaaaagtgggtttaagc 22813344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 136 - 272
Target Start/End: Complemental strand, 39701699 - 39701564
Alignment:
Q  136 aaaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggt 235  Q
    ||||||| |||| || ||| | || |||||| ||||| |||||||||||||||| |  |||||||||| ||||||| |||| |||||||||||| |||||    
T  39701699 aaaaatatacagttggcaaatatttaaattaggtggcatgacacataggattgattgggtcaaaattgaggttttgtaaaaggggctaaacatggagggt 39701600  T
Q  236 gtcttttgccattctttttaaaagggggccaaaattg 272  Q
      ||||| ||||| ||||||||| |||||||||||||    
T  39701599 cacttttaccattttttttaaaa-ggggccaaaattg 39701564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 169 - 312
Target Start/End: Complemental strand, 22812776 - 22812634
Alignment:
Q  169 tggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaa 268  Q
    |||| |||||| |||| |||||  || ||||||||||||||||||||| || |||||||| | ||||||||||||||||| ||||||| |||||  ||||    
T  22812776 tggcatgacacgtaggcttgaccaagccaaaattggggttttgcaaaagggactaaacataaggggtgtcttttgccatt-tttttaataggggatcaaa 22812678  T
Q  269 attgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||  || | |  ||||||| ||||| ||||||||||||||||    
T  22812677 attgcaacttttgcaaacttaaggggtcaaaagtgggtttaagc 22812634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 168 - 311
Target Start/End: Complemental strand, 40842138 - 40841995
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    ||||| |||||||||   |||||| ||||||||||| |||||||||||||||| |||||||   ||||  ||||||||||| ||||||||||||| ||||    
T  40842138 gtggcatgacacatatagttgactgagtcaaaattgaggttttgcaaaaaggggtaaacatagggggtcacttttgccattttttttaaaaggggaccaa 40842039  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggtttaag 311  Q
    |||||  || | |  |||||||| |||| ||||||| |||||||    
T  40842038 aattgcaacttttgcaaacttagagggtgaaaagtgtgtttaag 40841995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 193 - 311
Target Start/End: Original strand, 52035088 - 52035206
Alignment:
Q  193 agtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttaggg 292  Q
    ||||||||||| |||||||||||| ||||||||||||| ||||   |||||||||| ||||||| |||||||||||||||  || | |  ||| ||| ||    
T  52035088 agtcaaaattgaggttttgcaaaaggggctaaacatgaggggtcatttttgccattttttttaatagggggccaaaattgcaacttttgcaaatttaagg 52035187  T
Q  293 ggttaaaagtgggtttaag 311  Q
    ||| |||||||||||||||    
T  52035188 ggtaaaaagtgggtttaag 52035206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 164 - 312
Target Start/End: Original strand, 18704317 - 18704466
Alignment:
Q  164 ttatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgcca-ttctttttaaaagggg 262  Q
    ||||||||| ||||||||||| |||||| ||||||||||| |||||||||||| |||  |||||||| ||||   |||||||| || ||||||| | |||    
T  18704317 ttatgtggcatgacacataggcttgactaagtcaaaattgaggttttgcaaaagggggcaaacatgaggggtcatttttgccatttttttttaatatggg 18704416  T
Q  263 gccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||||||| ||| | |  ||| ||||||||| || |||| ||||||||    
T  18704417 gccaaaattgctacttttgcaaaattagggggtaaatagtgcgtttaagc 18704466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 156 - 272
Target Start/End: Original strand, 34370666 - 34370782
Alignment:
Q  156 ttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattcttttta 255  Q
    |||| |||||| ||||| ||||||||||||||||||  |||||||||| | ||||||| || ||||||||||| | ||||  ||||||||| | ||||||    
T  34370666 tttttaaattaggtggcatgacacataggattgactgggtcaaaattgagattttgcagaaggggctaaacataaggggtcacttttgccaattttttta 34370765  T
Q  256 aaagggggccaaaattg 272  Q
    | | |||||||||||||    
T  34370766 ataaggggccaaaattg 34370782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 168 - 303
Target Start/End: Original strand, 1961083 - 1961218
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    |||||||| |||||||| |||||| |||||||||||  ||||||||||||||| || ||||   || |  ||||||||||| ||||||| ||||||||||    
T  1961083 gtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaaaggggtagacataggggatcacttttgccattttttttaatagggggccaa 1961182  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtg 303  Q
    |||||  || | |  ||||||||||||| |||||||    
T  1961183 aattgcaacttttgcaaacttagggggtaaaaagtg 1961218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 31182737 - 31182659
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgcca-ttctttttaaaagggggccaaaatt 271  Q
    |||||||||||||||||||| || ||| ||||||||||||||  ||||||||| || ||||||||||||| ||||||||    
T  31182737 gtcaaaattggggttttgcagaagggggtaaacatgaagggtcacttttgccatttttttttaaaaggggaccaaaatt 31182659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 498 - 584
Target Start/End: Original strand, 40117919 - 40118005
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcatagag 584  Q
    |||||||| |||  |||| ||||||||||||||||| ||||||||||| ||||||||    ||||| ||||||||||||||||||||    
T  40117919 ctgttaggctggtttatacgaaagaaagaacacatcctccttccttttcctcttgtttaacaggaattccatgaatttggcatagag 40118005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 312
Target Start/End: Original strand, 56113666 - 56113812
Alignment:
Q  166 atgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggcc 265  Q
    ||||||| || |||||| ||||||||  |||||||| |  |||||| |||| |||  |||||||  ||||  ||||||||||| ||||||| ||||||||    
T  56113666 atgtggcatgccacatatgattgactcggtcaaaatcgacgttttgtaaaagggggaaaacatggggggtagcttttgccattttttttaatagggggcc 56113765  T
Q  266 aaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||||  || | |  ||||||||||||| ||||||| ||||||||    
T  56113766 aaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagc 56113812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 313
Target Start/End: Complemental strand, 6047207 - 6047063
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    ||||| || |||||| | |||||| |||||||||||  ||||||||||| ||| || |||| |  |||   |||||||||| ||||||| ||||||||||    
T  6047207 gtggcatgccacatacggttgactgagtcaaaattgacgttttgcaaaagggg-tagacataagaggtcatttttgccattttttttaatagggggccaa 6047109  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggtttaagca 313  Q
    |||||  || | |  ||||||||||||| |||||||||||||||||    
T  6047108 aattgcaacttttgcaaacttagggggtaaaaagtgggtttaagca 6047063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 312
Target Start/End: Complemental strand, 16217315 - 16217190
Alignment:
Q  187 tgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaac 286  Q
    ||||| |||||||||||  |||||||||||||  ||||||||| | || |||||| |||||| |||| || |||||  |||||| ||||||  || ||||    
T  16217315 tgactaagtcaaaattgatgttttgcaaaaagaactaaacatggaaggggtctttggccatttttttaaataggggatcaaaatcgttacactttaaaac 16217216  T
Q  287 ttagggggttaaaagtgggtttaagc 312  Q
    ||| ||||| ||||||| ||||||||    
T  16217215 ttaaggggtcaaaagtgcgtttaagc 16217190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 10616001 - 10616105
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    |||||||| |||||| | ||||||||||||||||||  ||||||||||| ||| || |||||   |||  ||||||||||| ||||||| |||||| |||    
T  10616001 gtggcgtgccacatatggttgacttagtcaaaattgacgttttgcaaaagggggtagacatgggaggtcacttttgccattttttttaatagggggtcaa 10616100  T
Q  268 aattg 272  Q
    |||||    
T  10616101 aattg 10616105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 18667254 - 18667333
Alignment:
Q  193 agtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattg 272  Q
    ||||||||||| |||||||| ||| |||  ||| ||| |||||  ||||||||||| |||||||||||||||||||||||    
T  18667254 agtcaaaattgaggttttgctaaagggggaaaatatggagggtcacttttgccattttttttaaaagggggccaaaattg 18667333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 312
Target Start/End: Complemental strand, 18703346 - 18703218
Alignment:
Q  185 attgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaa 284  Q
    ||||||||||||||||||||  ||||  |||| ||| ||||||| | ||||  ||||||||||| ||||||| || ||||||||||||  || | |  ||    
T  18703346 attgacttagtcaaaattggaattttataaaagggggtaaacattaggggtcacttttgccattttttttaatagagggccaaaattgcaacgtttgcaa 18703247  T
Q  285 actta-gggggttaaaagtgggtttaagc 312  Q
    ||||| |||||| ||||||| ||||||||    
T  18703246 acttaggggggtaaaaagtgtgtttaagc 18703218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 498 - 581
Target Start/End: Original strand, 15404076 - 15404159
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcata 581  Q
    |||||||||||||  |||||| |||||||| | |||||||||| | ||  ||||||| || ||||| |||||||||||||||||    
T  15404076 ctgttagggtggcaaatatgatagaaagaatatatcatccttcttcttcatcttgtttggtaggaattccatgaatttggcata 15404159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 49700657 - 49700724
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaaggg 261  Q
    ||||||||||| ||||||||||| ||||||||||||| |||   ||||||||||| |||| |||||||    
T  49700657 gtcaaaattggagttttgcaaaaggggctaaacatgatgggccacttttgccatttttttaaaaaggg 49700724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 52034271 - 52034193
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattg 272  Q
    |||||||||| |||||||||||| || || ||||| | ||||  |||||| |||| ||||||| |||||||||||||||    
T  52034271 gtcaaaattgaggttttgcaaaagggactgaacataaggggtcacttttgtcattttttttaatagggggccaaaattg 52034193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 7035817 - 7035873
Alignment:
Q  164 ttatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaaggg 220  Q
    ||||||||| ||||| ||||| |||||| |||||||||||| |||||| ||||||||    
T  7035817 ttatgtggcatgacatataggtttgactaagtcaaaattggtgttttgtaaaaaggg 7035873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 312
Target Start/End: Complemental strand, 22099073 - 22098925
Alignment:
Q  164 ttatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaaggggg 263  Q
    |||||| || |||||||||||||| ||    |||||||||| ||||||||||| || |||||||| ||||| | | ||||| ||  ||||||| ||| ||    
T  22099073 ttatgtagcatgacacataggattaaccagatcaaaattggtgttttgcaaaagggtctaaacataaaggggggcatttgctatattttttaataggagg 22098974  T
Q  264 ccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
     ||||||   ||||| || ||| ||||||||| |||| || ||||||||    
T  22098973 tcaaaatctctacattttaaaagttagggggtgaaaattgtgtttaagc 22098925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 272
Target Start/End: Complemental strand, 10614926 - 10614844
Alignment:
Q  186 ttgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattg 272  Q
    ||||||||||||||||||  ||||||| ||||||| || |||||  ||||  ||||||||||| ||||||| |||||||||||||||    
T  10614926 ttgacttagtcaaaattgatgttttgc-aaaaggggtagacatg--gggtcacttttgccatt-tttttaacagggggccaaaattg 10614844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 25011810 - 25011755
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggg 293  Q
    ||||||||||| ||||||| ||||||||||||| |  |||| ||||||||||||||    
T  25011810 cttttgccattttttttaatagggggccaaaatcgcaacattttgaaacttagggg 25011755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 272
Target Start/End: Original strand, 46171390 - 46171490
Alignment:
Q  169 tggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaa 268  Q
    ||||||||| ||||||||||||   ||||||||| | ||||||||||| |||||||||| | |||||   |||||||||| ||||||| | |||||||||    
T  46171390 tggcgtgacgcataggattgaccaggtcaaaattagtgttttgcaaaaggggctaaacacg-agggtcgtttttgccatt-tttttaata-ggggccaaa 46171486  T
Q  269 attg 272  Q
    ||||    
T  46171487 attg 46171490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 498 - 576
Target Start/End: Original strand, 26061892 - 26061970
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttg 576  Q
    |||||||||||||  | |||| |||||||| | |||||||||| | ||||||||||| || ||||| || |||||||||    
T  26061892 ctgttagggtggcaaaaatgatagaaagaatatatcatccttcttctttctcttgtttggtaggaattctatgaatttg 26061970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 34156032 - 34155990
Alignment:
Q  166 atgtggcgtgacacataggattgacttagtcaaaattggggtt 208  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||    
T  34156032 atgtggcgtgacacataggcttgactaagtcaaaattgaggtt 34155990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 46170432 - 46170298
Alignment:
Q  177 cacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttac 276  Q
    |||||| | |||||| |||||||||||  |||||||||||  || || |||||  ||||  ||||||||||| ||||||| ||||  |||||||||  ||    
T  46170432 cacatacggttgactgagtcaaaattgacgttttgcaaaagagggtagacatg--gggtcacttttgccattttttttaataggga-ccaaaattgcaac 46170336  T
Q  277 atcttgaaacttagggggttaaaagtgggtttaagcaa 314  Q
     ||   ||||||||| ||| ||||||||||||||||||    
T  46170335 ttccgcaaacttaggaggtaaaaagtgggtttaagcaa 46170298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 56112770 - 56112696
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||||||||| ||||||| ||||||| |||||||  || | |  ||||||||||||| ||||||| ||||||||    
T  56112770 cttttgccattttttttaatagggggctaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagc 56112696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 13397904 - 13397969
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    ||||||||||| ||||||| |||||||||||||||  | || ||||||||||| |||  |||||||    
T  13397904 cttttgccattttttttaatagggggccaaaattgcaatattttgaaacttagagggcgaaaagtg 13397969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 18705377 - 18705450
Alignment:
Q  239 ttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||||||| ||||||| |||||| |||||||| ||| | |  ||||||||||||| || |||| ||||||||    
T  18705377 ttttgccattttttttaatagggggtcaaaattgctacttttgcaaacttagggggtaaatagtgcgtttaagc 18705450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 1e-62; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 390 - 572
Target Start/End: Original strand, 25533675 - 25533857
Alignment:
Q  390 gggttgcctccgattcagcgcttcttttacgtcttgagcccgacggttcccatgggtttcctcccatgcaacacttcatttgacgtctattagcttgacg 489  Q
    ||||||||||| |||||||||||||||||||||||||| | ||| | |||||| |||| ||||||||||| | |||||||| ||||||||||||||||||    
T  25533675 gggttgcctcccattcagcgcttcttttacgtcttgagtctgacaggtcccataggttgcctcccatgcagcgcttcatttaacgtctattagcttgacg 25533774  T
Q  490 ccttgatcctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaa 572  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| |||||||||| ||||||    
T  25533775 ccttgatcctgttagggtggcttatatgaaagaaagaacacatcatccttcttctttctcttgttaggaaggaacttcatgaa 25533857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 136 - 312
Target Start/End: Original strand, 30796122 - 30796298
Alignment:
Q  136 aaaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggt 235  Q
    ||||||| ||||||| | | |||| || ||||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||| ||||| || ||||     
T  30796122 aaaaatagacagctgacgagtttttaacttatgtggcatgacacataggtttgactaagtcaaaatcggtgttttgcaaaaggggttaaacttggagggg 30796221  T
Q  236 gtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||||  ||||| ||||||| || ||| |||||| | ||| | || ||||||||||||| |||||||| |||||||    
T  30796222 gtctttgaccattttttttaatagagggtcaaaatcgctactttttaaaacttagggggtcaaaagtggatttaagc 30796298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 136 - 272
Target Start/End: Complemental strand, 20126362 - 20126226
Alignment:
Q  136 aaaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggt 235  Q
    ||||||| ||||||||||  | || || |||||||||||| ||   ||||||||||  |||||||||| ||||||||| || ||||||||||||| ||||    
T  20126362 aaaaataaacagctgtcagttctttaagttatgtggcgtgccatgcaggattgactaggtcaaaattgaggttttgcagaaggggctaaacatgaggggt 20126263  T
Q  236 gtcttttgccattctttttaaaagggggccaaaattg 272  Q
      ||||||||||| ||||||| |||||||||||||||    
T  20126262 cacttttgccattttttttaatagggggccaaaattg 20126226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 479 - 605
Target Start/End: Complemental strand, 32442657 - 32442531
Alignment:
Q  479 ttagcttgacgccttgatcctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggc 578  Q
    |||||| |||||||  | ||| |||||||||| | |||||||||||||||||||||||||||  ||| || ||||| |||||||  ||||||||||||||    
T  32442657 ttagctcgacgcctcaaccctattagggtggcttgtatgaaagaaagaacacatcatccttctctttcctgttgtttggaaggatgtccatgaatttggc 32442558  T
Q  579 atagagtggtaagtgttaacatcctcc 605  Q
    ||||||   |||||||| |||| ||||    
T  32442557 atagagatataagtgttcacatgctcc 32442531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 169 - 312
Target Start/End: Complemental strand, 30793990 - 30793846
Alignment:
Q  169 tggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgcca-ttctttttaaaagggggccaa 267  Q
    |||| ||||||||||| |||||| |||||||||||  ||||||||||| ||||||||| || |||| ||||||  ||| || ||||||| ||||||||||    
T  30793990 tggcatgacacataggtttgactaagtcaaaattgatgttttgcaaaaggggctaaacttggagggggtctttgaccatttttttttaatagggggccaa 30793891  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||| | ||| | || ||||||||| ||| || ||||| |||||||    
T  30793890 aatcgctactttttaaaacttaggaggtcaagagtggatttaagc 30793846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 156 - 271
Target Start/End: Complemental strand, 3453492 - 3453377
Alignment:
Q  156 ttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattcttttta 255  Q
    |||| |||||| ||||| ||||||||| ||||||||  |||||||||| ||||||||| || ||||||||||| | ||||  |||||||| || ||||||    
T  3453492 tttttaaattaggtggcatgacacataagattgactgggtcaaaattgaggttttgcagaaggggctaaacataaggggtcacttttgccttttttttta 3453393  T
Q  256 aaagggggccaaaatt 271  Q
    | |||||| |||||||    
T  3453392 atagggggtcaaaatt 3453377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 20127289 - 20127368
Alignment:
Q  193 agtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattg 272  Q
    ||||||||||| |||||||||||| ||| ||||||| | ||||  ||||||||||| ||||||| |||||||||||||||    
T  20127289 agtcaaaattgaggttttgcaaaaggggataaacataaggggtcacttttgccattttttttaatagggggccaaaattg 20127368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 312
Target Start/End: Original strand, 42702054 - 42702173
Alignment:
Q  193 agtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttaggg 292  Q
    ||||||||||| |||||||||||| ||| ||||||| | ||||  ||||||||||| ||||||| ||||| |||||||||  || | |  ||||||| ||    
T  42702054 agtcaaaattgaggttttgcaaaaggggataaacataaggggtcgcttttgccattttttttaataggggaccaaaattgcaacctttgtaaacttaagg 42702153  T
Q  293 ggttaaaagtgggtttaagc 312  Q
    ||| ||||||| ||||||||    
T  42702154 ggtaaaaagtgcgtttaagc 42702173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 194 - 312
Target Start/End: Complemental strand, 42701069 - 42700951
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggg 293  Q
    ||||||||||||||||||||||| ||||||| ||| | ||||   |||||||||| ||||||| |||||| ||||||||  || | |  |||||||||||    
T  42701069 gtcaaaattggggttttgcaaaaggggctaagcataaggggtcatttttgccattttttttaatagggggtcaaaattgcaacctttgcaaacttagggg 42700970  T
Q  294 gttaaaagtgggtttaagc 312  Q
    || ||||||  ||||||||    
T  42700969 gtaaaaagtttgtttaagc 42700951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 498 - 581
Target Start/End: Original strand, 31429745 - 31429828
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcata 581  Q
    |||||||||||||  |||||| |||||||| | |||||||||| | || |||||||| || ||||| |||||||||||||||||    
T  31429745 ctgttagggtggcaaatatgatagaaagaatatatcatccttcttcttcctcttgtttggtaggaattccatgaatttggcata 31429828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 498 - 579
Target Start/End: Original strand, 1505630 - 1505711
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggca 579  Q
    |||||||||||||  |||||| |||||||| | |||||||||| | || |||||||| || ||||| |||||||||||||||    
T  1505630 ctgttagggtggcaaatatgatagaaagaatatatcatccttcttcttcctcttgtttggtaggaattccatgaatttggca 1505711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 499 - 584
Target Start/End: Original strand, 10530085 - 10530170
Alignment:
Q  499 tgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcatagag 584  Q
    ||||||||||||  |||||||||||| |||||||| |||||||| || |||||||| ||  |||| || ||||||||| |||||||    
T  10530085 tgttagggtggctaatatgaaagaaaaaacacatcctccttcctcttcctcttgtttggttggaattctatgaatttgacatagag 10530170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 498 - 579
Target Start/End: Complemental strand, 25871895 - 25871814
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggca 579  Q
    |||||||||||||  |||||| |||||||| | |||||||||| | || |||||||| || ||||| |||||||||||||||    
T  25871895 ctgttagggtggcaaatatgatagaaagaatatatcatccttcttcttcctcttgtttggtaggaattccatgaatttggca 25871814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 498 - 579
Target Start/End: Original strand, 25958692 - 25958773
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggca 579  Q
    |||||||||||||  |||||| |||||||| | |||||||||| | || |||||||| || ||||| |||||||||||||||    
T  25958692 ctgttagggtggcaaatatgatagaaagaatatatcatccttcttcttcctcttgtttggtaggaattccatgaatttggca 25958773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 26069036 - 26068932
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    |||||||| ||||| || ||||||  ||||||||||  ||||||||||| ||| |||||||   || |  ||||||||||| ||||||| ||||||||||    
T  26069036 gtggcgtgccacatggggttgactgggtcaaaattgacgttttgcaaaagggggtaaacataggggatcacttttgccattttttttaatagggggccaa 26068937  T
Q  268 aattg 272  Q
    |||||    
T  26068936 aattg 26068932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 27848411 - 27848337
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||||||||| ||||||| |||||||||||||||  || | |  ||||||||||||| ||||||| ||||||||    
T  27848411 cttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagc 27848337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 34386985 - 34386907
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattg 272  Q
    ||||||||||||||||||||||| ||| |||| ||| |||||   |||| ||||| ||||||||||||  |||||||||    
T  34386985 gtcaaaattggggttttgcaaaagggggtaaatatggagggtcatttttaccattttttttaaaagggaaccaaaattg 34386907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 3454384 - 3454461
Alignment:
Q  195 tcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgcca-ttctttttaaaagggggccaaaatt 271  Q
    ||||||||| ||||||||| || ||||||||||| | ||||  ||||||||| || ||||||| ||||||||||||||    
T  3454384 tcaaaattgaggttttgcagaaggggctaaacataaggggtcacttttgccatttttttttaatagggggccaaaatt 3454461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 498 - 579
Target Start/End: Complemental strand, 24236217 - 24236136
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggca 579  Q
    ||||||||||| |  |||||| |||||||| | |||||||||| | || |||||||| || ||||| |||||||||||||||    
T  24236217 ctgttagggtgacaaatatgatagaaagaagatatcatccttcttcttcctcttgtttggtaggaattccatgaatttggca 24236136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 581
Target Start/End: Original strand, 16789734 - 16789817
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcata 581  Q
    |||||||||||||  |||||| |||||||| | |||||||||| | || |||||||| || ||||| || || |||||||||||    
T  16789734 ctgttagggtggcaaatatgatagaaagaatatatcatccttcttcttcctcttgtttggtaggaattcaataaatttggcata 16789817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 581
Target Start/End: Complemental strand, 45454983 - 45454900
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcata 581  Q
    |||||||||||||  |||||| |||||||| | |||||||||| | ||  ||||||| || ||||| |||||||||||| ||||    
T  45454983 ctgttagggtggcaaatatgatagaaagaatatatcatccttcttcttcatcttgtttggtaggaattccatgaatttgacata 45454900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 11175982 - 11175917
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    ||||||||||| ||||||| ||||||||||||| |  |||| ||||||||||| |||  |||||||    
T  11175982 cttttgccattttttttaatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtg 11175917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 18538057 - 18538122
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    ||||||||||| ||||||| ||||||||||||| |  |||| ||||||||||| |||  |||||||    
T  18538057 cttttgccattttttttaatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtg 18538122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 21004564 - 21004621
Alignment:
Q  173 gtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatga 230  Q
    ||||||||||| ||||||  |||||||||| | |||||||||||  ||||||||||||    
T  21004564 gtgacacatagtattgaccaagtcaaaattagtgttttgcaaaagaggctaaacatga 21004621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 33076237 - 33076302
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    ||||||||||| ||||||| |||||||||||||||  || | |  ||||||||||||| |||||||    
T  33076237 cttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtg 33076302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 3e-57; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 391 - 572
Target Start/End: Original strand, 18828888 - 18829069
Alignment:
Q  391 ggttgcctccgattcagcgcttcttttacgtcttgagcccgacggttcccatgggtttcctcccatgcaacacttcatttgacgtctattagcttgacgc 490  Q
    |||||||||| ||||||||||||||||||||||| || | |||||||||||| |||| ||||||||||  | |||||||| |||||||||| ||||||||    
T  18828888 ggttgcctcctattcagcgcttcttttacgtcttaagtctgacggttcccataggttgcctcccatgcggcgcttcatttaacgtctattatcttgacgc 18828987  T
Q  491 cttgatcctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaa 572  Q
    || ||||||||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||||||||    
T  18828988 ctcgatcctgttagggtggcttatatgaaagaaataacacatcacccttcctctttctcttgttccgaaggaactccatgaa 18829069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 168 - 312
Target Start/End: Complemental strand, 31376674 - 31376530
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    ||||| ||||||||| | |||||| ||||||||||| |||||||||||| ||| ||||||||| ||||  ||||||||||| ||||||||||||||||||    
T  31376674 gtggcatgacacatatggttgactgagtcaaaattgaggttttgcaaaagggggtaaacatgaggggtcacttttgccattttttttaaaagggggccaa 31376575  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||  || | |  |||||||| |||| ||||||| ||||||||    
T  31376574 aattgcaacttttgcaaacttagagggtgaaaagtgcgtttaagc 31376530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 169 - 312
Target Start/End: Original strand, 22778552 - 22778694
Alignment:
Q  169 tggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaa 268  Q
    ||||||||||||||||||||||  |||||||||||| ||||||||||  ||||||||||||  ||||    |||||| || ||||||| |||||||||||    
T  22778552 tggcgtgacacataggattgaccaagtcaaaattggtgttttgcaaatggggctaaacatg-ggggtcatgtttgcctttttttttaatagggggccaaa 22778650  T
Q  269 attgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||  || | |  ||||||||||||| |||||||| |||||||    
T  22778651 attgcaacttttgcaaacttagggggtaaaaagtggatttaagc 22778694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 172 - 312
Target Start/End: Complemental strand, 1531776 - 1531636
Alignment:
Q  172 cgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaatt 271  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||||||||||||  ||||  ||||||  ||| ||||||| |||||| |||||||    
T  1531776 cgtgacacataggattgaccaggtcaaaattggtgttttgcaaaaggggctaaacatggggggtaacttttgtaattttttttaatagggggtcaaaatt 1531677  T
Q  272 gttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |  || | |  |||||||||| || ||||||| ||||||||    
T  1531676 gcaacttttgcaaacttagggagtaaaaagtgagtttaagc 1531636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 168 - 312
Target Start/End: Original strand, 24033066 - 24033210
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    ||||| || |||||| | ||||||  |||||||||| |||||||||||| ||| |||| |||  ||||  ||||||||||| ||||||| ||||||||||    
T  24033066 gtggcatgccacatatggttgactgggtcaaaattgaggttttgcaaaagggggtaaatatggggggtcacttttgccattttttttaatagggggccaa 24033165  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||| ||| | |  |||||||| |||| |||||| |||||||||    
T  24033166 aattgctacttttgcaaacttagagggtgaaaagtaggtttaagc 24033210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 168 - 312
Target Start/End: Original strand, 1532485 - 1532630
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaa-agggggcca 266  Q
    |||||||| |||||| | |||||| |||||||||||   |||||||||| ||| || |||||  ||||  ||||||||||| ||||| || | |||||||    
T  1532485 gtggcgtgccacatacggttgactaagtcaaaattgacattttgcaaaagggggtagacatggggggtcacttttgccatttttttttaatatggggcca 1532584  T
Q  267 aaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||||  || |||  ||||||||||||| ||||||||||||||||    
T  1532585 aaattgcaacttctgcaaacttagggggtaaaaagtgggtttaagc 1532630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 136 - 272
Target Start/End: Complemental strand, 5971263 - 5971127
Alignment:
Q  136 aaaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggt 235  Q
    ||||||| ||||||||||  | || || |||||||||||| ||   ||||||||||  |||||||||| ||||||||| || |||||||||| || ||||    
T  5971263 aaaaataaacagctgtcagttctttaagttatgtggcgtgccatgcaggattgactaggtcaaaattgaggttttgcagaaggggctaaacaggaggggt 5971164  T
Q  236 gtcttttgccattctttttaaaagggggccaaaattg 272  Q
      |||||||| || ||||||| ||||||| |||||||    
T  5971163 cacttttgcctttttttttaatagggggctaaaattg 5971127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 5972200 - 5972279
Alignment:
Q  193 agtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattg 272  Q
    ||||||||||| |||||||||||| ||| ||||||| | ||||  ||||||||||| ||||||| |||||||||||||||    
T  5972200 agtcaaaattgaggttttgcaaaaggggataaacataaggggtcacttttgccattttttttaatagggggccaaaattg 5972279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 313
Target Start/End: Original strand, 29183387 - 29183513
Alignment:
Q  186 ttgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaa 285  Q
    |||||| |||||||||||  ||||||||||| ||| || | |||  ||||  |||||||| || ||||||| |||||||||||||||  || | || |||    
T  29183387 ttgactgagtcaaaattgacgttttgcaaaagggggtatatatggggggtcacttttgccttt-tttttaatagggggccaaaattgcaactttttcaaa 29183485  T
Q  286 cttagggggttaaaagtgggtttaagca 313  Q
    ||||| |||| ||||||| |||||||||    
T  29183486 cttagagggtaaaaagtgtgtttaagca 29183513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 312
Target Start/End: Original strand, 16276877 - 16277021
Alignment:
Q  166 atgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggcc 265  Q
    ||||||| || |||||| | ||||||  |||||||| |  ||||||||||| |||  |||||||  ||||  ||||||||||| ||||||| ||||||||    
T  16276877 atgtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatgg-gggtagcttttgccatt-tttttaatagggggcc 16276974  T
Q  266 aaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||||  || | |  ||||||||||||| ||||||| ||||||||    
T  16276975 aaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagc 16277021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 18964796 - 18964870
Alignment:
Q  156 ttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatga 230  Q
    |||| ||| ||||||||||| ||| ||| |||||||   |||||||| | |||||||||||||||||||||||||    
T  18964796 ttttgaaagtatgtggcgtgccacgtagaattgactggatcaaaattagtgttttgcaaaaagggctaaacatga 18964870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 31377613 - 31377688
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaatt 271  Q
    ||||||||||| ||||||||||| ||| |||||||  ||||   ||||| ||||| ||||||||||||||||||||||    
T  31377613 gtcaaaattggtgttttgcaaaatggggtaaacat--agggccacttttaccattttttttaaaagggggccaaaatt 31377688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 312
Target Start/End: Complemental strand, 52142987 - 52142870
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggg 293  Q
    |||||||||||||||||||||||  || |||||||  |||||  |||||| |||| |||||||||| ||| ||||||| | || | |  |||||||||||    
T  52142987 gtcaaaattggggttttgcaaaagcgggtaaacatagagggtcacttttgtcatt-tttttaaaagagggtcaaaattataacttttacaaacttagggg 52142889  T
Q  294 gttaaaagtgggtttaagc 312  Q
    || ||||||  ||||||||    
T  52142888 gtaaaaagtatgtttaagc 52142870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 28920880 - 28920945
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    ||||||||||| ||||||| ||||||||||||| |  |||| |||||||||||||||  |||||||    
T  28920880 cttttgccattttttttaatagggggccaaaatcgcaacattttgaaacttagggggcgaaaagtg 28920945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 22776646 - 22776543
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    |||||||| |||||| | |||||| |||||| ||||  ||||||||||| ||| || |||||| ||||  ||||| ||||| ||||||| ||||||| ||    
T  22776646 gtggcgtgccacatacggttgactgagtcaagattgatgttttgcaaaagggggtagacatgaggggtcacttttaccatt-tttttaatagggggctaa 22776548  T
Q  268 aattg 272  Q
    |||||    
T  22776547 aattg 22776543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 24038020 - 24037944
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattg 272  Q
    ||||||||||  |||||||||||  || ||||||||  ||||  ||||||||||| |||||||||||||| ||||||||    
T  24038020 gtcaaaattgatgttttgcaaaagagggtaaacatg--gggtcacttttgccattttttttaaaagggggtcaaaattg 24037944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 24196336 - 24196270
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgg 304  Q
    ||||||||||| ||||||| || |||||||||| |  |||| |||||||||||||||  ||||||||    
T  24196336 cttttgccattttttttaatagagggccaaaatcgcaacattttgaaacttagggggcgaaaagtgg 24196270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 311
Target Start/End: Complemental strand, 43915025 - 43914909
Alignment:
Q  193 agtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttaggg 292  Q
    |||||||||||  ||||||||||| ||| || |||||  ||||  ||||||||||| ||||||| |||||||||||||||  || | |  ||||||||||    
T  43915025 agtcaaaattgacgttttgcaaaagggg-tagacatggggggtcacttttgccatt-tttttaatagggggccaaaattgcaacctttgcaaacttaggg 43914928  T
Q  293 ggttaaaagtgggtttaag 311  Q
    ||  ||||||| |||||||    
T  43914927 ggcgaaaagtgcgtttaag 43914909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 46432445 - 46432511
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgg 304  Q
    ||||||||||| ||||||| ||||||||||||| |  |||| |||||||||| ||||  ||||||||    
T  46432445 cttttgccattttttttaatagggggccaaaatcgcaacattttgaaacttaaggggcgaaaagtgg 46432511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 3616874 - 3616809
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    ||||||||||| ||||||| ||||||||||||| |  |||| ||||||||||| |||  |||||||    
T  3616874 cttttgccattttttttaatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtg 3616809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 312
Target Start/End: Original strand, 30106977 - 30107118
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    ||||| || |||||| | |||| | |||||||||||  |||||| |||| ||| || |||||  ||||  ||||||||||| ||||||| ||||| ||||    
T  30106977 gtggcatgccacatacggttgattgagtcaaaattgacgttttgtaaaaggggatagacatg--gggtcacttttgccatt-tttttaacaggggaccaa 30107073  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||  |||| |  ||||||||||||  ||||||| ||||||||    
T  30107074 aattgcaacatttgcaaacttagggggcgaaaagtgcgtttaagc 30107118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 168 - 312
Target Start/End: Complemental strand, 39688487 - 39688343
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    |||||| ||||||||||||||||  |||||| ||||| || |||||||| ||| ||||||||| |||||||||| |||||| ||||||| ||||| ||||    
T  39688487 gtggcgagacacataggattgaccaagtcaagattggagtattgcaaaaggggttaaacatgacgggtgtctttggccattttttttaataggggaccaa 39688388  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||  || | |  ||||||| ||||| ||||||||||||||||    
T  39688387 aattgcaacttttgcaaacttaaggggtcaaaagtgggtttaagc 39688343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 169 - 312
Target Start/End: Original strand, 39688900 - 39689042
Alignment:
Q  169 tggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaa 268  Q
    |||| |||||| |||| |||||  ||||||||||| |||||||||||| ||||||||||||| |||||||||||||| || ||||||| |||||| ||||    
T  39688900 tggcatgacacgtaggcttgaccaagtcaaaattgaggttttgcaaaa-gggctaaacatgaggggtgtcttttgcctttttttttaatagggggtcaaa 39688998  T
Q  269 attgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||  || | |  ||| ||||||||| |||| |||||||||||    
T  39688999 attgcaacttttgcaaatttagggggtcaaaaatgggtttaagc 39689042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 194 - 312
Target Start/End: Original strand, 39581937 - 39582055
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggg 293  Q
    |||||||||||||||||||| ||  || |||||||| |||||  ||||||||||| |||||||||||||||||||||||  || | |  ||||||||||     
T  39581937 gtcaaaattggggttttgcagaagagggtaaacatggagggtcacttttgccattttttttaaaagggggccaaaattgcaacttttgcaaacttaggga 39582036  T
Q  294 gttaaaagtgggtttaagc 312  Q
    || ||||||| ||||||||    
T  39582037 gtaaaaagtgtgtttaagc 39582055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 168 - 312
Target Start/End: Original strand, 1192027 - 1192171
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    ||||| || |||||| | ||||||  |||||||||| | |||||||||| ||| ||||||||  ||||  ||||||||||| ||||||| ||||||||||    
T  1192027 gtggcatgccacatatggttgactgggtcaaaattgagcttttgcaaaagggggtaaacatggggggtcacttttgccattttttttaatagggggccaa 1192126  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||| ||| | |  |||||||| |||| |||||| |||||||||    
T  1192127 aattgctacttttgcaaacttagagggtgaaaagtaggtttaagc 1192171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 136 - 312
Target Start/End: Complemental strand, 14054293 - 14054119
Alignment:
Q  136 aaaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggt 235  Q
    |||||||||||| || ||| |||| || ||| ||||| ||||||||||| ||||   |||||||||||| ||||||||||| ||||||||||||| |||     
T  14054293 aaaaatacacagttggcaattttttaagttaagtggcatgacacataggtttgatcaagtcaaaattggtgttttgcaaaaggggctaaacatgaggggg 14054194  T
Q  236 gtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |  |||||||||| ||||||| | || ||||||||||  || | |  ||||||||| ||| ||||||| ||||||||    
T  14054193 gatttttgccatt-tttttaata-ggagccaaaattgcaacttttgcaaacttaggaggtaaaaagtgtgtttaagc 14054119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 166 - 312
Target Start/End: Original strand, 23754287 - 23754432
Alignment:
Q  166 atgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggcc 265  Q
    ||||||||||||||||| | |||||| ||| ||||||| |||||||||||||||| | ||||||  ||||  |||||| |||| ||||||| ||||||||    
T  23754287 atgtggcgtgacacataagtttgactaagttaaaattgaggttttgcaaaaagggat-aacatggggggtcacttttgtcattttttttaatagggggcc 23754385  T
Q  266 aaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
     ||||||  || | |  |||||||| |||||||||||  ||||||||    
T  23754386 caaattgcaacttttgcaaacttagagggttaaaagtacgtttaagc 23754432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 194 - 312
Target Start/End: Complemental strand, 28301463 - 28301345
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggg 293  Q
    ||||||||||| ||||||||||| |||||||||| || |||   ||||||||||| ||||||||||||||| |||||||  || | || |||| |||| |    
T  28301463 gtcaaaattggagttttgcaaaaggggctaaacacgaggggccacttttgccattttttttaaaagggggctaaaattgcaactttttcaaacataggag 28301364  T
Q  294 gttaaaagtgggtttaagc 312  Q
    || ||||||| ||||||||    
T  28301363 gtaaaaagtgtgtttaagc 28301345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 312
Target Start/End: Complemental strand, 26830444 - 26830326
Alignment:
Q  193 agtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttaggg 292  Q
    |||||||||||||||||||||||| ||| ||||||||  || |  ||||||||||| ||||||| |||||| |||||||| ||| | |  |||| |||||    
T  26830444 agtcaaaattggggttttgcaaaagggggtaaacatgggggataacttttgccatt-tttttaatagggggtcaaaattgctacgtttgcaaacctaggg 26830346  T
Q  293 ggttaaaagtgggtttaagc 312  Q
    ||| ||||||| ||||||||    
T  26830345 ggtaaaaagtgtgtttaagc 26830326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 194 - 312
Target Start/End: Original strand, 28301588 - 28301705
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggg 293  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||  ||||||| ||| ||||||||| ||||| |||||||  || | |  ||||||||| |    
T  28301588 gtcaaaattggagttttgcaaaaggggctaaacatgaggggtcacttttgctattttttttaaaa-ggggctaaaattgcaacttttgcaaacttaggag 28301686  T
Q  294 gttaaaagtgggtttaagc 312  Q
    || ||||||| ||||||||    
T  28301687 gtaaaaagtgcgtttaagc 28301705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 312
Target Start/End: Complemental strand, 1191089 - 1190970
Alignment:
Q  192 tagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagg 291  Q
    ||||||||||||   |||||||||||||| ||||||||  ||||  ||||||||||| ||||||| |||| |||||||||| ||| | |  ||||||||     
T  1191089 tagtcaaaattgaacttttgcaaaaaggggtaaacatgg-gggtcacttttgccattttttttaatagggagccaaaattgctacttttgcaaacttaga 1190991  T
Q  292 gggttaaaagtgggtttaagc 312  Q
    |||| ||||||| ||||||||    
T  1190990 gggtgaaaagtgagtttaagc 1190970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 312
Target Start/End: Original strand, 26831386 - 26831499
Alignment:
Q  197 aaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggtt 296  Q
    |||||||||||||||||||| ||| | ||||||  ||||  |||||||| || ||||||| ||||||||||||||  ||| | |  |||||||||||||     
T  26831386 aaaattggggttttgcaaaatggggtcaacatg--gggtcacttttgcctttttttttaatagggggccaaaattactacttttgcaaacttagggggta 26831483  T
Q  297 aaaagtgggtttaagc 312  Q
    ||||||| ||||||||    
T  26831484 aaaagtgtgtttaagc 26831499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 312
Target Start/End: Original strand, 44297728 - 44297870
Alignment:
Q  166 atgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggcc 265  Q
    |||||| |||||| ||||| |||||| ||||||||||| |||||| | ||||||| |||||||  |||||  ||||||||||| ||||||||||||  ||    
T  44297728 atgtggtgtgacagataggcttgactaagtcaaaattgaggttttac-aaaaggggtaaacat--agggtcacttttgccatt-tttttaaaagggaacc 44297823  T
Q  266 aaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||||  || | |  ||||||||||||| |||| || ||||||||    
T  44297824 aaaattgcaacttttacaaacttagggggtgaaaaatgcgtttaagc 44297870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 4376327 - 4376224
Alignment:
Q  169 tggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaa 268  Q
    |||||||||||||||| |||||   ||||||||| | ||||||||||| |||||||||||  |||||  | |||| |||| ||||||| |||| ||||||    
T  4376327 tggcgtgacacataggtttgacccggtcaaaattagtgttttgcaaaaggggctaaacatagagggtcac-tttgtcattttttttaatagggagccaaa 4376229  T
Q  269 attgt 273  Q
    |||||    
T  4376228 attgt 4376224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 312
Target Start/End: Original strand, 6572345 - 6572491
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgcca--ttctttttaaaagggggcc 265  Q
    ||||| |||||||||   |||||  ||| ||||||| |||||||||||| ||||||||||||| ||||   ||||||||  || ||||||| ||| ||||    
T  6572345 gtggcatgacacataacgttgaccaagttaaaattgaggttttgcaaaaggggctaaacatgaggggtcatttttgccattttttttttaataggaggcc 6572444  T
Q  266 aaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||||| || | |  |||| || ||||| |||| |||||||||||    
T  6572445 aaaattgtaacttttgcaaacctaaggggtaaaaactgggtttaagc 6572491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 312
Target Start/End: Complemental strand, 23753379 - 23753260
Alignment:
Q  193 agtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttaggg 292  Q
    |||||||||||  ||||||||||| ||| |||| |||    ||  ||||||||||| ||||||| |||||||||||||||  || | |  ||||||||||    
T  23753379 agtcaaaattgacgttttgcaaaaggggataaatatgggatgtcacttttgccattttttttaatagggggccaaaattgcaacttttacaaacttaggg 23753280  T
Q  293 ggttaaaagtgggtttaagc 312  Q
    ||| ||||||| ||||||||    
T  23753279 ggtaaaaagtgtgtttaagc 23753260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 498 - 577
Target Start/End: Original strand, 25593875 - 25593954
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttgg 577  Q
    |||||||||||||  |||||| |||||||| | |||||||||| | || |||||||| || ||||| |||||||||||||    
T  25593875 ctgttagggtggcaaatatgatagaaagaatatatcatccttcttcttcctcttgtttggtaggaattccatgaatttgg 25593954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 311
Target Start/End: Complemental strand, 35562418 - 35562246
Alignment:
Q  136 aaaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggt 235  Q
    |||||||||||| || ||| |||| || ||| ||||| ||||||||||| |||||  |||||||||||  |||||| |||| || ||||||||| ||||     
T  35562418 aaaaatacacagttggcaattttttaagttaagtggcatgacacataggtttgaccaagtcaaaattgatgttttgtaaaagggtctaaacatg-aggga 35562320  T
Q  236 gtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaag 311  Q
      ||||||||||| ||||||| | |||| ||||||||  || | |  |||||||| |||| ||||||| |||||||    
T  35562319 aacttttgccatt-tttttaata-ggggtcaaaattgcaacttttgcaaacttagagggtaaaaagtgtgtttaag 35562246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 272
Target Start/End: Complemental strand, 45518344 - 45518209
Alignment:
Q  137 aaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtg 236  Q
    |||||| |||||||  ||||||| || |||||||||||||||| |||||||||    ||||||||||   |||||||||| ||| |||| |||  ||||     
T  45518344 aaaatatacagctgataactttttaagttatgtggcgtgacacctaggattgatcaggtcaaaattgatcttttgcaaaaggggttaaatatggggggtc 45518245  T
Q  237 tcttttgccattctttttaaaagggggccaaaattg 272  Q
      |||||||| | ||||||| |||||| ||||||||    
T  45518244 atttttgccactttttttaatagggggtcaaaattg 45518209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 499 - 581
Target Start/End: Original strand, 33879578 - 33879660
Alignment:
Q  499 tgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcata 581  Q
    ||||||||||||  |||||| |||||||| | |||||| ||| | || |||||||| || ||||| |||||||||||||||||    
T  33879578 tgttagggtggcaaatatgatagaaagaatatatcatcattcttcttcctcttgtttggtaggaaatccatgaatttggcata 33879660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 312
Target Start/End: Original strand, 36985242 - 36985357
Alignment:
Q  195 tcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttaggggg 294  Q
    |||||||||| |||||||||||   | |||||||  |||||  ||||||||||| ||||||||||||||| |||||||  || | |  |||||||| |||    
T  36985242 tcaaaattggtgttttgcaaaatatggtaaacat--agggtcacttttgccattttttttaaaagggggctaaaattgcaacttttgcaaacttagaggg 36985339  T
Q  295 ttaaaagtgggtttaagc 312  Q
    | |||||| |||||||||    
T  36985340 tgaaaagtaggtttaagc 36985357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 26363508 - 26363611
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    |||||||| |||||| | |||||| |||||||||||  ||||||||||| ||| || | ||   ||||  ||||||||||| ||||||| ||||||||||    
T  26363508 gtggcgtgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagatattgggggtcacttttgccatt-tttttaatagggggccaa 26363606  T
Q  268 aattg 272  Q
    |||||    
T  26363607 aattg 26363611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 312
Target Start/End: Original strand, 41774691 - 41774834
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    ||||| || |||||| | ||||||  |||||||||| | |||||||||| ||  |||| |||  ||||  ||||||||||| ||||||| |||||| |||    
T  41774691 gtggcatgccacatatggttgactgggtcaaaattgagcttttgcaaaagggagtaaatatgg-gggtcacttttgccattttttttaatagggggtcaa 41774789  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||| ||| | |  |||||||| |||| |||||| |||||||||    
T  41774790 aattgctacttttgcaaacttagagggtgaaaagtaggtttaagc 41774834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 6571445 - 6571378
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaaggg 261  Q
    |||||||||| |||||||||||| ||||||||||| | || |  ||||||||||| ||||||| ||||    
T  6571445 gtcaaaattgaggttttgcaaaatgggctaaacataagggatcacttttgccattttttttaataggg 6571378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 272
Target Start/End: Original strand, 45519406 - 45519507
Alignment:
Q  169 tggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaa 268  Q
    |||||||||| ||| |||||||  ||| |||||||| ||||||| ||||||| || ||||| ||| |  ||||||||| | ||||||| |||||||||||    
T  45519406 tggcgtgacatatatgattgaccaagttaaaattggtgttttgc-aaaagggatagacatg-aggatcacttttgccaatttttttaatagggggccaaa 45519503  T
Q  269 attg 272  Q
    ||||    
T  45519504 attg 45519507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 312
Target Start/End: Original strand, 45021559 - 45021704
Alignment:
Q  166 atgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggcc 265  Q
    ||||||| || |||||| | ||||||  |||||||| |  ||||||||||| |||  |||||||  ||||  |||||| |||| ||||||| |||||| |    
T  45021559 atgtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatgg-gggtagcttttgtcattttttttaatagggggtc 45021657  T
Q  266 aaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||||  || | |  ||||||||||||| ||||||| ||||||||    
T  45021658 aaaattgcaacttttacaaacttagggggtaaaaagtgagtttaagc 45021704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 8802611 - 8802680
Alignment:
Q  221 ctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttag 290  Q
    ||||||||  |||||  ||||||||||| ||||||| ||||||||||||| |  |||| |||||||||||    
T  8802611 ctaaacatagagggtcacttttgccattttttttaatagggggccaaaatcgcaacattttgaaacttag 8802680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 136 - 271
Target Start/End: Complemental strand, 42876316 - 42876182
Alignment:
Q  136 aaaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggt 235  Q
    ||||||| |||| || ||| |||| |||||| ||||| |||||||||||||| |||| |||||||||| |||||||||||| |||||||||||  |||||    
T  42876316 aaaaatatacagttggcaaatttttaaattaggtggcatgacacataggattaacttggtcaaaattgaggttttgcaaaaggggctaaacatagagggt 42876217  T
Q  236 gtcttttgccattctttttaaaagggggccaaaatt 271  Q
      ||||| | ||| ||||||||||||||| ||||||    
T  42876216 cactttt-ctattttttttaaaagggggctaaaatt 42876182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 166 - 312
Target Start/End: Complemental strand, 29993469 - 29993324
Alignment:
Q  166 atgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggcc 265  Q
    |||||||||||||||||   |||||| ||||||||||| |||||||||||| ||| ||||||||  ||||  ||||||||||| ||||||| |||| |||    
T  29993469 atgtggcgtgacacataaatttgactaagtcaaaattgaggttttgcaaaatgggataaacatggggggtcacttttgccatt-tttttaatagggtgcc 29993371  T
Q  266 aaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||||   || | |  |||||||| |||||||||||| ||||||||    
T  29993370 aaaattacaacttttgcaaacttagagggttaaaagtgcgtttaagc 29993324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 183102 - 183204
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    |||||||| ||||||||||||||| |||||||||||  ||||||||||| ||| || |||||  ||||  ||||||||||| ||||||| ||||||||||    
T  183102 gtggcgtgccacataggattgactgagtcaaaattgacgttttgcaaaagggggtagacatg--gggtcacttttgccattttttttaatagggggccaa 183199  T
Q  268 aattg 272  Q
    |||||    
T  183200 aattg 183204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 12949966 - 12950074
Alignment:
Q  164 ttatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaaggggg 263  Q
    |||||||||||| ||   ||||||||||  |||||||||| ||||||||| || ||||||||||||| ||||  ||||||||||| ||||||| |||||     
T  12949966 ttatgtggcgtgccatgcaggattgactaggtcaaaattgaggttttgcagaaggggctaaacatgaggggtcacttttgccattttttttaatagggga 12950065  T
Q  264 ccaaaattg 272  Q
    ||| |||||    
T  12950066 ccataattg 12950074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 5014137 - 5014060
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaatt 271  Q
    |||||||||| |||||||||||| ||||||||||||| ||||  ||||||||||| ||||||| ||| | ||||||||    
T  5014137 gtcaaaattgaggttttgcaaaaggggctaaacatgaggggtcacttttgccattttttttaataggagaccaaaatt 5014060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 12949001 - 12948922
Alignment:
Q  193 agtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattg 272  Q
    ||||||||||| |||||||||||| ||| ||||||| | ||||  ||||| ||||| ||||||| |||||||||||||||    
T  12949001 agtcaaaattgaggttttgcaaaaggggataaacataaggggtcacttttaccattttttttaatagggggccaaaattg 12948922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 254
Target Start/End: Original strand, 12935808 - 12935898
Alignment:
Q  164 ttatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattcttttt 254  Q
    |||||||||||| ||   ||||||||||  |||||||||| ||||||||| || ||||||||||||| ||||  ||||||||||| |||||    
T  12935808 ttatgtggcgtgccatgcaggattgactaggtcaaaattgaggttttgcagaaggggctaaacatgaggggtcacttttgccatttttttt 12935898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 312
Target Start/End: Complemental strand, 29352617 - 29352491
Alignment:
Q  186 ttgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaa 285  Q
    ||||| |||||||||||  | |||||||||| ||| |||| |||  ||||   |||||||||| ||||||| ||||||||||||||| ||| | |  |||    
T  29352617 ttgacctagtcaaaattaagcttttgcaaaagggggtaaatatggggggtcatttttgccattttttttaatagggggccaaaattgctacttttgcaaa 29352518  T
Q  286 cttagggggttaaaagtgggtttaagc 312  Q
     |||| |||| ||||||||||||||||    
T  29352517 tttagagggtgaaaagtgggtttaagc 29352491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 272
Target Start/End: Original strand, 28223545 - 28223680
Alignment:
Q  136 aaaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacat-gaaggg 234  Q
    ||||||| ||||||| |||||||| || |||||||||||||||| ||||||||||   | ||||||||   |||| | ||| |||||||| || | ||||    
T  28223545 aaaaatatacagctggcaactttttaagttatgtggcgtgacacctaggattgaccaggccaaaattgatcttttac-aaatgggctaaatatgggaggg 28223643  T
Q  235 tgtcttttgccattctttttaaaagggggccaaaattg 272  Q
    |  ||||||||||| ||||||| |||||||||||||||    
T  28223644 tcacttttgccatt-tttttaatagggggccaaaattg 28223680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 16793676 - 16793572
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    |||||||| |||||| | |||||| |||||||||||   |||||||||| ||| || |||||| | ||  ||||||||||| ||||||| ||| ||||||    
T  16793676 gtggcgtgccacatatggttgactgagtcaaaattgatcttttgcaaaagggggtagacatgaggagttacttttgccattttttttaataggaggccaa 16793577  T
Q  268 aattg 272  Q
    |||||    
T  16793576 aattg 16793572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 312
Target Start/End: Original strand, 29353522 - 29353665
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    ||||| || |||||| | ||||||  |||||||||| | ||||| |||| ||| ||||||||  ||||  ||||||||||| ||||||| ||||| ||||    
T  29353522 gtggcatgccacatatggttgactgggtcaaaattgagcttttgtaaaatggggtaaacatgg-gggtcacttttgccattttttttaataggggaccaa 29353620  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||| ||| | |  |||||||| |||| |||||| |||||||||    
T  29353621 aattgctacttttgcaaacttagagggtgaaaagtaggtttaagc 29353665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 595
Target Start/End: Complemental strand, 35668432 - 35668352
Alignment:
Q  515 atgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggcatagagtggtaagtgtt 595  Q
    ||||||||||||||||||||| ||||| ||| |||||||| || ||||  ||||| |||||| |||||||  |||||||||    
T  35668432 atgaaagaaagaacacatcattcttccatttcctcttgtttggtaggagttccattaatttgacatagagaagtaagtgtt 35668352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 271
Target Start/End: Complemental strand, 9070849 - 9070716
Alignment:
Q  136 aaaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggt 235  Q
    ||||||||| ||||| |||||||| || |||||||||||||||| |||||||||    ||||||||||   |||||| ||||||| |||| |||  ||||    
T  9070849 aaaaatacatagctggcaactttttaagttatgtggcgtgacacctaggattgatcaggtcaaaattgatcttttgc-aaaagggttaaatatggggggt 9070751  T
Q  236 gtcttttgccattctttttaaaagggggccaaaatt 271  Q
       |||||||||| ||||||| | ||||||||||||    
T  9070750 catttttgccattttttttaata-ggggccaaaatt 9070716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 12934837 - 12934758
Alignment:
Q  193 agtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattg 272  Q
    ||||||||||| |||||||||||| ||| ||||||| | ||||  ||||| ||||| ||||||| ||||| |||||||||    
T  12934837 agtcaaaattgaggttttgcaaaaggggataaacataaggggtcacttttaccattttttttaataggggaccaaaattg 12934758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 2023407 - 2023333
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||||||||| ||||||| |||||||||||||||  || | |  ||||||||||||| || |||||||||||||    
T  2023407 cttttgccattttttttaatagggggccaaaattgcaacttttgtaaacttagggggtaaatagtgggtttaagc 2023333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 312
Target Start/End: Original strand, 2024209 - 2024352
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    ||||| || |||||| | |||||| |||||||||||  ||||||||||| ||| || |||| | || |   |||||||||| ||||||| |||||  |||    
T  2024209 gtggcatgccacatacggttgactgagtcaaaattgacgttttgcaaaagggggtagacataagggatcatttttgccatt-tttttaataggggaacaa 2024307  T
Q  268 aattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    |||||  || | |  ||||||||||||| ||||||||||||||||    
T  2024308 aattgcaacttttgcaaacttagggggtaaaaagtgggtttaagc 2024352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 9071896 - 9071943
Alignment:
Q  169 tggcgtgacacataggattgacttagtcaaaattggggttttgcaaaa 216  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||||    
T  9071896 tggcgtgacacatatgattgaccaagtcaaaattggtgttttgcaaaa 9071943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 5015066 - 5015143
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattg 272  Q
    |||||||||| ||||||||||||    ||||||||||||||   ||||||||||| ||||||| | |||||||||||||    
T  5015066 gtcaaaattgaggttttgcaaaagaaactaaacatgaagggccacttttgccattttttttaata-ggggccaaaattg 5015143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 312
Target Start/End: Complemental strand, 16228899 - 16228783
Alignment:
Q  194 gtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggg 293  Q
    |||||||||| |||||||||||| ||  |||||||| |||||  |||||||| || || |||||||||||||||||  | ||||| |  |||||||||||    
T  16228899 gtcaaaattgaggttttgcaaaagggtgtaaacatg-agggtcacttttgccgtt-ttcttaaaagggggccaaaacggctacatttgaaaacttagggg 16228802  T
Q  294 gttaaaagtgggtttaagc 312  Q
    || || | || ||||||||    
T  16228801 gtgaataatgcgtttaagc 16228783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 52; Significance: 3e-20; HSPs: 3)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 137 - 272
Target Start/End: Complemental strand, 9738 - 9603
Alignment:
Q  137 aaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtg 236  Q
    |||||| ||||||||||  | || || |||||||||||| ||   ||||||||||  |||||||||| ||||||||| || ||||||||||||| || |     
T  9738 aaaataaacagctgtcagttctttaagttatgtggcgtgccatgcaggattgactaggtcaaaattgaggttttgcagaaggggctaaacatgagggttc 9639  T
Q  237 tcttttgccattctttttaaaagggggccaaaattg 272  Q
     ||||||||||| ||||||| |||||||||||||||    
T  9638 acttttgccattttttttaatagggggccaaaattg 9603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 137 - 272
Target Start/End: Complemental strand, 15112 - 14977
Alignment:
Q  137 aaaatacacagctgtcaacttttaaaattatgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtg 236  Q
    |||||| ||||||||||  | || || |||||||||||| ||   ||||||||||  |||||||||| ||||||||| || ||||||||||||| || |     
T  15112 aaaataaacagctgtcagttctttaagttatgtggcgtgccatgcaggattgactaggtcaaaattgaggttttgcagaaggggctaaacatgagggttc 15013  T
Q  237 tcttttgccattctttttaaaagggggccaaaattg 272  Q
     ||||||||||| ||||||| |||||||||||||||    
T  15012 acttttgccattttttttaatagggggccaaaattg 14977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 312
Target Start/End: Original strand, 16043 - 16162
Alignment:
Q  193 agtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttaggg 292  Q
    ||||||||||| |||||||||||| ||| ||||||| | | ||  ||||||||||| |||||||  ||||||||||||||  || | |  ||||||| ||    
T  16043 agtcaaaattgaggttttgcaaaaggggataaacataaggtgtcacttttgccattttttttaattgggggccaaaattgcaacctttgtaaacttaagg 16142  T
Q  293 ggttaaaagtgggtttaagc 312  Q
    ||| ||||||| ||||||||    
T  16143 ggtaaaaagtgcgtttaagc 16162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 80928 - 81064
Alignment:
Q  174 tgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaaaattgt 273  Q
    |||||||||||||||||  |||||||||||| ||||||||||| ||| ||||||||  ||||   |||||||||| |||| ||||||||| |||||| |     
T  80928 tgacacataggattgaccaagtcaaaattggtgttttgcaaaagggggtaaacatg--gggtcaattttgccatttttttaaaaagggggtcaaaatcgc 81025  T
Q  274 tacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||| | |  ||||||||||||| || |||| ||||||||    
T  81026 tacttttgcaaacttagggggtgaatagtgcgtttaagc 81064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0827 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0827
Description:

Target: scaffold0827; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 2506 - 2442
Alignment:
Q  166 atgtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatga 230  Q
    ||||||||||||||||| | |||||| ||||||||||| |||||||||||||||| |||||||||    
T  2506 atgtggcgtgacacataagtttgactaagtcaaaattgaggttttgcaaaaaggggtaaacatga 2442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 294
Target Start/End: Complemental strand, 24950 - 24825
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    |||||||| |||||| | ||| || |||||||||||  ||||||||||| ||| || |||||  ||||  ||||||||||| ||||||| ||||||||||    
T  24950 gtggcgtgccacatatggttggctgagtcaaaattgacgttttgcaaaagggggtagacatgg-gggtcacttttgccattttttttaatagggggccaa 24852  T
Q  268 aattgttacatcttgaaacttaggggg 294  Q
    |||||  || |||  ||||||||||||    
T  24851 aattgcaacttctgcaaacttaggggg 24825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 294
Target Start/End: Complemental strand, 37467 - 37342
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    |||||||| |||||| | ||| || |||||||||||  ||||||||||| ||| || |||||  ||||  ||||||||||| ||||||| ||||||||||    
T  37467 gtggcgtgccacatatggttggctgagtcaaaattgacgttttgcaaaagggggtagacatgg-gggtcacttttgccattttttttaatagggggccaa 37369  T
Q  268 aattgttacatcttgaaacttaggggg 294  Q
    |||||  || |||  ||||||||||||    
T  37368 aattgcaacttctgcaaacttaggggg 37342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 38278 - 38380
Alignment:
Q  171 gcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgcca-ttctttttaaaagggggccaaaa 269  Q
    ||||| |||||| | |||||| |||||||||||  ||||||||||| ||| || ||||| |||||  ||||||||| || ||||||| ||||||||||||    
T  38278 gcgtgccacatatgtttgactaagtcaaaattgacgttttgcaaaagggggtagacatggagggtcacttttgccatttttttttaatagggggccaaaa 38377  T
Q  270 ttg 272  Q
    |||    
T  38378 ttg 38380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 268555 - 268452
Alignment:
Q  168 gtggcgtgacacataggattgacttagtcaaaattggggttttgcaaaaagggctaaacatgaagggtgtcttttgccattctttttaaaagggggccaa 267  Q
    |||||||| |||||||| |||||| |||||||||||  ||||||||||| ||| || ||||   || |  ||||||||||| ||||||| ||||||||||    
T  268555 gtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagggggtagacataggggatcacttttgccatt-tttttaatagggggccaa 268457  T
Q  268 aattg 272  Q
    |||||    
T  268456 aattg 268452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 11636 - 11562
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtgggtttaagc 312  Q
    ||||||||||| ||||||| ||||||| |||||||  || | |  ||||||||||||| ||||||| ||||||||    
T  11636 cttttgccattttttttaatagggggctaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagc 11562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 5722 - 5660
Alignment:
Q  241 ttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    |||||||| ||||||| ||| |||||||||||| |||| ||||||| |||||||  |||||||    
T  5722 ttgccattttttttaataggaggccaaaattgtaacattttgaaacatagggggcgaaaagtg 5660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 3189 - 3254
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggttaaaagtg 303  Q
    ||||||||||| ||||||| |||||| ||||||||  |||| ||||||||||| |||  |||||||    
T  3189 cttttgccattttttttaatagggggtcaaaattgcaacattttgaaacttagagggcgaaaagtg 3254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 24647 - 24688
Alignment:
Q  176 acacataggattgacttagtcaaaattggggttttgcaaaaa 217  Q
    ||||||||| |||||| |||||||||| ||||||||||||||    
T  24647 acacataggcttgactaagtcaaaattagggttttgcaaaaa 24688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 579
Target Start/End: Complemental strand, 12433 - 12352
Alignment:
Q  498 ctgttagggtggcctatatgaaagaaagaacacatcatccttcctttttctcttgttcggaaggaactccatgaatttggca 579  Q
    |||| ||||||||  |||||| |||||||| | |||||||||| | || |||||||| || || || |||||||||||||||    
T  12433 ctgtcagggtggcaaatatgatagaaagaatatatcatccttcttcttcctcttgtttggtagaaattccatgaatttggca 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 44051 - 44107
Alignment:
Q  238 cttttgccattctttttaaaagggggccaaaattgttacatcttgaaacttagggggt 295  Q
    ||||||||||| ||||||| ||||||||||||||   |||| ||||||||||||||||    
T  44051 cttttgccatt-tttttaatagggggccaaaattacaacattttgaaacttagggggt 44107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University