View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20708_low_2 (Length: 351)
Name: NF20708_low_2
Description: NF20708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20708_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 33374786 - 33375126
Alignment:
| Q |
1 |
aacttcatacactgttggcttacttacatagtttgaaacttgggaaattaacttatctgttatctccacagaagggacacacttattctcacaagccttt |
100 |
Q |
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| T |
33374786 |
aacttcatacactgttggcttacttacataatttgaaacttcggaaattaacttatctgttatctccacagaaggcacacacttattctcacaagccttt |
33374885 |
T |
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| Q |
101 |
ctcttccttaaacaataaacataaaaaagtaataataatagtgaaatcagaatagtgcatcctagacatataccaatggaaattataatagaaaaatgat |
200 |
Q |
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| T |
33374886 |
ctcttccttaaacaataaacataaaaaagtaataataatagtgaaatcagaatagtgcatcctagacatataccaatggaaattataatagaaaaatgat |
33374985 |
T |
|
| Q |
201 |
tgcttctctttctttcacttgaagaatagtatgattgagaaagagctggtaagtttttcacaggaataaaaactggaaggttgattgcaacagtgaagtt |
300 |
Q |
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| T |
33374986 |
tgattctctttctttcacttgaagaatagtatgattgagaaagagctggtaagtttttcacaggaataaaaactggaaggttgattgcaacagtgaagtt |
33375085 |
T |
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| Q |
301 |
ttgaccaaagttgtttgtatttgctgtgattatgtcctttg |
341 |
Q |
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| T |
33375086 |
ttgaccaaagttgtttgtatttgctgtgattatgtcctttg |
33375126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 77 - 324
Target Start/End: Original strand, 33389453 - 33389698
Alignment:
| Q |
77 |
acacacttattctcacaagcctttctcttccttaaacaataaacataaaaaagtaataataatagtgaaatcagaatagtgcatcctagacatataccaa |
176 |
Q |
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| T |
33389453 |
acacactgattctcataagcctttcttttcctcaaacaatagacaaaaaccagaaatagtgatagtgaaatcagaatagcgcgtcctagactcgtactaa |
33389552 |
T |
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| Q |
177 |
tggaaattataatagaaaaatgatt-gcttctctttctttcacttgaagaatagtatgattgagaaagagctggtaagtttttcacaggaataaaaactg |
275 |
Q |
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| T |
33389553 |
tggaaatgataatgtgaaaatgatttgcttctctttctttcaattgatgaata---tgattaagaaagagatggtaagtttttcactgggataaaaactg |
33389649 |
T |
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| Q |
276 |
gaaggttgattgcaacagtgaagttttgaccaaagttgtttgtatttgc |
324 |
Q |
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| T |
33389650 |
aaaagttggttgcagcaatgaagttttgaccaaagtactttgcatttgc |
33389698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 230 - 336
Target Start/End: Original strand, 33382232 - 33382338
Alignment:
| Q |
230 |
tatgattgagaaagagctggtaagtttttcacaggaataaaaactggaaggttgattgcaacagtgaagttttgaccaaagttgtttgtatttgctgtga |
329 |
Q |
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||||||| |||||||| | ||||||||||||| || ||||||||||||| |||| ||||| |||||||||||||||||||||| ||| |||||| ||| |
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| T |
33382232 |
tatgattaagaaagagatagtaagtttttcactgggataaaaactggaaagttggttgcagcagtgaagttttgaccaaagttctttccatttgcagtgg |
33382331 |
T |
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| Q |
330 |
ttatgtc |
336 |
Q |
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||||||| |
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| T |
33382332 |
ttatgtc |
33382338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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