View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20708_low_3 (Length: 341)
Name: NF20708_low_3
Description: NF20708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20708_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 18219230 - 18218903
Alignment:
| Q |
14 |
cacaaatggtagtaggaagcagagcagcagaggacaaagcagcaaagatagaaaggctgaaaagtggtttccaaatttgcaaaccaagagggacctttat |
113 |
Q |
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| T |
18219230 |
cacaaatggtagtaggaagcagagcagcagaggacaaagcagcaaagatagaaaggctgaaaagtggtttccaaatttgcaaaccaagagggacctttat |
18219131 |
T |
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| Q |
114 |
gtggccaaacatgagcttgtctccacatgttgtaaccaaccttgatgaacatactgtggtcccaaccccaacctcagcttcctcatctaccacctcagca |
213 |
Q |
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| T |
18219130 |
gtggccaaacatgagcttgtctccacatgttgtaaccaaccttgatgaacatactgtggtcccaaccccaacctcagcttcctcatctaccacctcagca |
18219031 |
T |
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| Q |
214 |
cccaagcttgtctcaaattccaacactcataacttgtcattgtccatacctattccatcttctcctgttaagccattagcagagaggcgccctgtgagca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18219030 |
cccaagcttgtctcaaattccaacactcataacttgtcattgtccatacctattccatcttctcctgttaagccattagcagagaggcgccctgtgagca |
18218931 |
T |
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| Q |
314 |
caactactttgacacatgtcactggacc |
341 |
Q |
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| T |
18218930 |
caactactttgacacatgtcactggacc |
18218903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 43011093 - 43010995
Alignment:
| Q |
93 |
caaaccaagagggacctttatgtggccaaacatgagcttgtctccacatgttgtaaccaaccttgatgaacatactgtggtcccaaccccaacctcagc |
191 |
Q |
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| T |
43011093 |
caaaacaagagggacctttatgtggtcaaatacgagtttgtatccacatgttgtaaccaaccttgatgaacacactgtggtcccaaccccatcctcagc |
43010995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 43010984 - 43010927
Alignment:
| Q |
277 |
cctgttaagccattagcagagaggcgccctgtgagcacaactactttgacacatgtca |
334 |
Q |
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| T |
43010984 |
cctgttaagccattagcagagaggcgccctgtgagcacaactactttgacacatgtca |
43010927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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