View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20708_low_6 (Length: 214)
Name: NF20708_low_6
Description: NF20708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20708_low_6 |
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| [»] scaffold0056 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 21842709 - 21842873
Alignment:
| Q |
19 |
ttttctacccacctactcttgtacataaggcttggtatgggcgtttcgaaataaaccgcatatgcaagaacaattgtgttgagatcaaggaccagactag |
118 |
Q |
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| T |
21842709 |
ttttctacccagctactcttgtacataaggcttggtatgggcgtttcgaaataaaccgcatatgcaagaacaattgtgttgagatcaaggaccagactag |
21842808 |
T |
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| Q |
119 |
atggatgacaaaggttccaatcaaggaagtaatgcatctgcgagactatatggcagacctaggta |
183 |
Q |
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| T |
21842809 |
atggatggcaaaggttccaatcaaggaagtaatgcatctgcgagactatatgacaggcctaggta |
21842873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 27 - 179
Target Start/End: Original strand, 24720581 - 24720733
Alignment:
| Q |
27 |
ccacctactcttgtacataaggcttggtatgggcgtttcgaaataaaccgcatatgcaagaacaattgtgttgagatcaaggaccagactagatggatga |
126 |
Q |
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| T |
24720581 |
ccacctactcttatacataaggcttggtatggacctttcgaaataaaccgcatatgcaagaacaatcgtgttgagatcaaggaccacactagatggatgg |
24720680 |
T |
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| Q |
127 |
caaaggttccaatcaaggaagtaatgcatctgcgagactatatggcagaccta |
179 |
Q |
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| T |
24720681 |
caaaggtcccaatcgaggaagtcatgcatttgcgagactatatggcaggccta |
24720733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 19203290 - 19203140
Alignment:
| Q |
19 |
ttttctacccacctactcttgtacataaggcttggtatgggcgtttcgaaataaaccgcatatgcaagaacaattgtgttgagatcaaggaccagactag |
118 |
Q |
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| T |
19203290 |
ttttctatccacctactctcatgcataaggcttggtatgtgcctttcgaaataaaccgcatatgcaagaacaatcgtgttgagatcaaagaccacactag |
19203191 |
T |
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| Q |
119 |
atggatgacaaaggttccaatcaaggaagtaatgcatctgcgagactatat |
169 |
Q |
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| T |
19203190 |
gtggatgacaaaggtcccaattgaggaagtcatgcacgtgcgagactatat |
19203140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 24006 - 23846
Alignment:
| Q |
19 |
ttttctacccacctactcttgtacataaggcttggtatgggcgtttcgaaataaaccgcatatgcaagaacaattgtgttgagatcaaggaccagactag |
118 |
Q |
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||||||| || |||||||| || ||||||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||| |
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| T |
24006 |
ttttctatccgcctactctcgtgcataaggcttggtatgggcctttcgaaataaattgcatatgtaagaacaaccgtgttgagatcaaggaccacactag |
23907 |
T |
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| Q |
119 |
atggatgacaaaggttccaatcaaggaagtaatgcatctgcgagactatatggcagaccta |
179 |
Q |
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|||||| || ||||| ||||| || |||| |||||||||| ||||||||||||| |||| |
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| T |
23906 |
atggataaccaaggtcccaatggagaaagtcatgcatctgcaggactatatggcaggccta |
23846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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