View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20709_high_12 (Length: 382)
Name: NF20709_high_12
Description: NF20709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20709_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 54033815 - 54033441
Alignment:
| Q |
1 |
aattacatgaaaatatggttg----actatctagcagaagcaattcaccgaaaaattacatgaaaatgtgaacgcaaaataactaattttacttgcacga |
96 |
Q |
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| T |
54033815 |
aattacatgaaaatatggttggttgactatctagcagaagcaattcaccgaaaaattacatgaatatgtgaacgcaaaataactaattttacttgcacga |
54033716 |
T |
|
| Q |
97 |
gcggaataatgcattgcttggttagaaatttgggtgctaataattgaaattaactcgtattttttcccaagacaaaatttcgctttcttttcattagatg |
196 |
Q |
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| T |
54033715 |
gcggaataatgcattgcttggttagaaatttgggtgctaataattgaaattaactcgtattttttcccaagacaaaatttcgctttcttttcattagatg |
54033616 |
T |
|
| Q |
197 |
ttttgatgaaagaaactaattaatgctatgttctttaagatgatacttgatcctcttttcgtttcttcaaattgatcgagagtgatcaggtttcaccaaa |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54033615 |
ttttgatgaaagaaactaattaatgctatgttctttaagatgatacttgatcctcttttcgtttcttcaaattgatcgagagttatcaggtttcaccaaa |
54033516 |
T |
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| Q |
297 |
actccttt-nnnnnnnngttcacc----caaactatcagtattttagtcatcagggctccatcttgctctctgct |
366 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54033515 |
actcctttaaaaaaaaagttcacccatgcaaactatcagtattttagtcatcagggctccatcttgctctctgct |
54033441 |
T |
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