View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20709_high_19 (Length: 289)

Name: NF20709_high_19
Description: NF20709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20709_high_19
NF20709_high_19
[»] chr7 (16 HSPs)
chr7 (22-281)||(36217313-36217572)
chr7 (58-276)||(36221334-36221552)
chr7 (25-267)||(36226024-36226266)
chr7 (127-266)||(35939471-35939610)
chr7 (162-267)||(35946923-35947028)
chr7 (162-267)||(35958128-35958233)
chr7 (162-267)||(35977583-35977688)
chr7 (145-238)||(35982180-35982273)
chr7 (162-267)||(35998995-35999100)
chr7 (145-238)||(36003592-36003685)
chr7 (155-267)||(35955177-35955289)
chr7 (165-234)||(35965669-35965738)
chr7 (146-235)||(29602916-29603005)
chr7 (146-235)||(29750289-29750378)
chr7 (49-170)||(35973540-35973661)
chr7 (49-170)||(35994952-35995073)
[»] chr1 (2 HSPs)
chr1 (69-276)||(18125827-18126034)
chr1 (184-265)||(18118194-18118275)
[»] chr4 (2 HSPs)
chr4 (164-276)||(49340545-49340657)
chr4 (180-276)||(49351925-49352021)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 22 - 281
Target Start/End: Original strand, 36217313 - 36217572
Alignment:
Q  22 tttctgtgcacaatagagaaatcacctattcccatattgatgtttcaagtgttataggaagggagaatgacaaggaagcaattatcgagcttttgatgga 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36217313 tttctgtgcacaatagagaaatcacctattcccatattgatgtttcaagtgttataggaagggagaatgacaaggaagcaattatcgagcttttgatgga 36217412  T
Q  122 ttccgatcctcaaggttatggaaatggtcatagaagtttatgtgttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36217413 ttccgatcctcaaggttatggaaatggtcatagaagtttatgtgttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtg 36217512  T
Q  222 tacaatgataagaggatagatgaagtttttcaattgaagatgtgggcatgtgtctgtgtt 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36217513 tacaatgataagaggatagatgaagtttttcaattgaagatgtgggcatgtgtctctgtt 36217572  T

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Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 58 - 276
Target Start/End: Original strand, 36221334 - 36221552
Alignment:
Q  58 ttgatgtttcaagtgttataggaagggagaatgacaaggaagcaattatcgagcttttgatggattccgatcctcaaggttatggaaatggtcatagaag 157  Q
    |||||| |||||||||||| || ||||||||||||| ||||| ||||||| | ||||||||| |  |  ||||||| ||  ||||| ||||| | | ||     
T  36221334 ttgatgcttcaagtgttattgggagggagaatgacagggaagaaattatcaaacttttgatgcaaccgcatcctcatggagatggagatggtgacaaaaa 36221433  T
Q  158 tttatgtgttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattg 257  Q
    ||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||  ||||||| |||||||||||||||||||||  |||| ||||||    
T  36221434 tttgtgtgttattcccatagttggaattggtggcttggggaagaccacacttgcaaggttggtgttcaatgataagaggatagatgatattttccaattg 36221533  T
Q  258 aagatgtgggcatgtgtct 276  Q
    ||||| ||||  |||||||    
T  36221534 aagatttgggtgtgtgtct 36221552  T

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Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 267
Target Start/End: Complemental strand, 36226266 - 36226024
Alignment:
Q  25 ctgtgcacaatagagaaatcacctattcccatattgatgtttcaagtgttataggaagggagaatgacaaggaagcaattatcgagcttttgatggattc 124  Q
    ||||||| || |||||||| ||  |||||||  |||||| ||||  ||| ||||||||||||||||| | | | |  |||||| ||||||||||| |  |    
T  36226266 ctgtgcagaagagagaaatgactcattcccacgttgatgcttcagatgtgataggaagggagaatgagaggaatgatattatcaagcttttgatgcagcc 36226167  T
Q  125 cgatcctcaaggttatggaaatggtcatagaagtttatgtgttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtac 224  Q
      ||||||||||| |||   ||||| ||| |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |    
T  36226166 acatcctcaaggtgatgctgatggtgataaaagtttgtgtgttattcccatagtgggaattggtggcttggggaagaccacacttgcaaaattggtgttc 36226067  T
Q  225 aatgataagaggatagatgaagtttttcaattgaagatgtggg 267  Q
    || ||||||||| | |||||  |||| ||||||||||||||||    
T  36226066 aacgataagagggttgatgatcttttccaattgaagatgtggg 36226024  T

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Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 127 - 266
Target Start/End: Complemental strand, 35939610 - 35939471
Alignment:
Q  127 atcctcaaggttatggaaatggtcatagaagtttatgtgttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtacaa 226  Q
    ||||||| ||| ||||  ||||| ||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |||    
T  35939610 atcctcacggtgatggtgatggtgataaaagtttatgtgttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaa 35939511  T
Q  227 tgataagaggatagatgaagtttttcaattgaagatgtgg 266  Q
    |||||||||| |  || || |||| |||||||||||||||    
T  35939510 tgataagagggtgaatcaacttttccaattgaagatgtgg 35939471  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 162 - 267
Target Start/End: Complemental strand, 35947028 - 35946923
Alignment:
Q  162 tgtgttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaaga 261  Q
    ||||| ||||| ||||||||||||||||| ||| |||||||||||||||| || | ||||| |||||||||||||||| || || |||| || |||||||    
T  35947028 tgtgtcattccaatagtgggaattggaggtttgtggaagaccacacttgcgaagtcggtgttcaatgataagaggatacatcaacttttccagttgaaga 35946929  T
Q  262 tgtggg 267  Q
    ||||||    
T  35946928 tgtggg 35946923  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 162 - 267
Target Start/End: Complemental strand, 35958233 - 35958128
Alignment:
Q  162 tgtgttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaaga 261  Q
    ||||| ||||| ||||||||||||||||| ||||| ||||| ||||||||||| | ||||| ||||||||||||||| ||| || |||| || |||||||    
T  35958233 tgtgtcattccaatagtgggaattggaggtttgggaaagacaacacttgcaaagtcggtgttcaatgataagaggatggatcaacttttccagttgaaga 35958134  T
Q  262 tgtggg 267  Q
    ||||||    
T  35958133 tgtggg 35958128  T

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Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 162 - 267
Target Start/End: Complemental strand, 35977688 - 35977583
Alignment:
Q  162 tgtgttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaaga 261  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||  ||||||| | ||||| ||||||||||||||| ||| || |||| || |||||||    
T  35977688 tgtgtcattccaatagtgggaattggaggtttggggaagaccaccattgcaaagtcggtgttcaatgataagaggatggatcaacttttccagttgaaga 35977589  T
Q  262 tgtggg 267  Q
    ||||||    
T  35977588 tgtggg 35977583  T

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Target: chr7; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 35982273 - 35982180
Alignment:
Q  145 atggtcatagaagtttatgtgttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtacaatgataagaggat 238  Q
    ||||| ||| ||| ||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| | ||||||| |||||||    
T  35982273 atggtgataaaagcttatgtgttattcccattgtgggaattggaggtttgggaaagactacacttgcaaaattggttttcaatgatgagaggat 35982180  T

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Target: chr7; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 162 - 267
Target Start/End: Complemental strand, 35999100 - 35998995
Alignment:
Q  162 tgtgttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaaga 261  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||  ||||||| | ||||| ||||||||||||||| ||| || |||| || |||||||    
T  35999100 tgtgtcattccaatagtgggaattggaggtttggggaagaccaccattgcaaagtcggtgttcaatgataagaggatggatcaacttttccagttgaaga 35999001  T
Q  262 tgtggg 267  Q
    ||||||    
T  35999000 tgtggg 35998995  T

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Target: chr7; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 36003685 - 36003592
Alignment:
Q  145 atggtcatagaagtttatgtgttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtacaatgataagaggat 238  Q
    ||||| ||| ||| ||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| | ||||||| |||||||    
T  36003685 atggtgataaaagcttatgtgttattcccattgtgggaattggaggtttgggaaagactacacttgcaaaattggttttcaatgatgagaggat 36003592  T

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Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 35955289 - 35955177
Alignment:
Q  155 aagtttatgtgttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaa 254  Q
    |||||| ||||||||||||||| | || |||||||||||||| ||||||||||||||||| || |||| ||||||| | ||| | ||| || ||||  ||    
T  35955289 aagtttgtgtgttattcccataataggtattggaggattgggaaagaccacacttgcaaagttagtgttcaatgatgaaagggtggatcaaattttcaaa 35955190  T
Q  255 ttgaagatgtggg 267  Q
    |||||||||||||    
T  35955189 ttgaagatgtggg 35955177  T

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Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 35965738 - 35965669
Alignment:
Q  165 gttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtacaatgataaga 234  Q
    |||||||||||| | |||||||| || ||||||||||||||||||||||| ||||||| |||||||||||    
T  35965738 gttattcccatactaggaattggtggcttggggaagaccacacttgcaaacttggtgttcaatgataaga 35965669  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 29603005 - 29602916
Alignment:
Q  146 tggtcatagaagtttatgtgttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtacaatgataagag 235  Q
    |||||||| |||| | | ||||||||| || || ||||||||||| ||||| ||||| |||||||||||   ||||| ||||||||||||    
T  29603005 tggtcataaaagtctctctgttattcctattgttggaattggaggcttgggaaagactacacttgcaaagacggtgttcaatgataagag 29602916  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 29750289 - 29750378
Alignment:
Q  146 tggtcatagaagtttatgtgttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtacaatgataagag 235  Q
    |||||||| |||| | | ||||||||| || || ||||||||||| ||||| ||||| |||||||||||   ||||| ||||||||||||    
T  29750289 tggtcataaaagtctctctgttattcctattgttggaattggaggcttgggaaagactacacttgcaaagacggtgttcaatgataagag 29750378  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 35973661 - 35973540
Alignment:
Q  49 attcccatattgatgtttcaagtgttataggaagggagaatgacaaggaagcaattatcgagcttttgatggattccgatcctcaaggttatggaaatgg 148  Q
    |||||||| | |||| |||||||||||| || ||||||||||| | ||||| ||||||| ||||| ||||| |  |   |||||||||| ||||| | ||    
T  35973661 attcccatgtcgatgcttcaagtgttattgggagggagaatgatagggaagaaattatcaagcttctgatgcaaccacgtcctcaaggtgatggagacgg 35973562  T
Q  149 tcatagaagtttatgtgttatt 170  Q
    | ||| |||||| |||||||||    
T  35973561 tgataaaagtttgtgtgttatt 35973540  T

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Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 35995073 - 35994952
Alignment:
Q  49 attcccatattgatgtttcaagtgttataggaagggagaatgacaaggaagcaattatcgagcttttgatggattccgatcctcaaggttatggaaatgg 148  Q
    |||||||| | |||| |||||||||||| || ||||||||||| | ||||| ||||||| ||||| ||||| |  |   |||||||||| ||||| | ||    
T  35995073 attcccatgtcgatgcttcaagtgttattgggagggagaatgatagggaagaaattatcaagcttctgatgcaaccacgtcctcaaggtgatggagacgg 35994974  T
Q  149 tcatagaagtttatgtgttatt 170  Q
    | ||| |||||| |||||||||    
T  35994973 tgataaaagtttgtgtgttatt 35994952  T

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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 69 - 276
Target Start/End: Complemental strand, 18126034 - 18125827
Alignment:
Q  69 agtgttataggaagggagaatgacaaggaagcaattatcgagcttttgatggattccgatcctcaaggttatggaaatggtcatagaagtttatgtgtta 168  Q
    ||||| |||||||| |||| ||| | |||||  |||||| ||||||||||| |  |  ||||||| ||| ||||  ||||| ||| |||| ||| |||||    
T  18126034 agtgtaataggaagagagagtgatagggaagagattatcaagcttttgatgcaagcacatcctcatggtgatggtgatggtgataaaagtctatctgtta 18125935  T
Q  169 ttcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtgggc 268  Q
    ||||||| ||||||||||| || ||||||||||||||| | |||||  | || | |||||||||||| ||||||||| | |||||||||||||||||||     
T  18125934 ttcccatggtgggaattggtggcttggggaagaccacattggcaaagcttgttttcaatgataagagaatagatgaactctttcaattgaagatgtgggt 18125835  T
Q  269 atgtgtct 276  Q
     |||||||    
T  18125834 gtgtgtct 18125827  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 18118275 - 18118194
Alignment:
Q  184 ttggaggattggggaagaccacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtg 265  Q
    ||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||| |||||| |||||||||||||||||||    
T  18118275 ttggaggattggggaagaccacacttgcaaagttggtattcaacgataagaggatcgatgaattttttcaattgaagatgtg 18118194  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 276
Target Start/End: Original strand, 49340545 - 49340657
Alignment:
Q  164 tgttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatg 263  Q
    ||||||||| || || |||||||||||||| || || || |||||||||||  | ||||  |||||||||||  |||||||   ||||| ||||||||||    
T  49340545 tgttattcctattgttggaattggaggattaggaaaaactacacttgcaaaggtcgtgtttaatgataagagtttagatgagacttttccattgaagatg 49340644  T
Q  264 tgggcatgtgtct 276  Q
    ||||  |||||||    
T  49340645 tgggtgtgtgtct 49340657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 49351925 - 49352021
Alignment:
Q  180 ggaattggaggattggggaagaccacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtgggcatgtgtct 276  Q
    |||||||||||||| || ||||| |||||||||||    ||||  |||||||||||  |||||||   ||||| ||||||||||||||  |||||||    
T  49351925 ggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgataagagtttagatgagacttttccattgaagatgtgggtgtgtgtct 49352021  T

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