View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20709_high_21 (Length: 251)
Name: NF20709_high_21
Description: NF20709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20709_high_21 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 16622368 - 16622124
Alignment:
| Q |
8 |
cgaagaaaattaagtaaaa-taatgtgaaatgtatggaaattgcaaacacatcctcgaagatgaaaatgagtaataaaacagaaagttgggaatgtgttt |
106 |
Q |
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| T |
16622368 |
cgaagtaaattaagtaaaaataatgtgaaatgtatggaaattgcaaacacatcctggaagatgaaaatgagtaataaaagagaaagttgggaatgtgttt |
16622269 |
T |
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| Q |
107 |
gcaattatgataaatataggaattaaagtaatgaatgacagtgacacatttaggaataaaatattgagaagagcatgcatacctgaaaggcttgtttgaa |
206 |
Q |
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| T |
16622268 |
gcaattttgataaatttaggaattaaagtaatgaatgacagtgacacatttaggaataaaatattgagaagagcatgcatacctgaaaggcttgtttgaa |
16622169 |
T |
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| Q |
207 |
agccatgtccattaactcatcttgtgtaaatagtttaaggtcatc |
251 |
Q |
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| T |
16622168 |
agccatgtccattaactcatcttgtgtaaatagtttaaggtcatc |
16622124 |
T |
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