View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20709_high_3 (Length: 588)
Name: NF20709_high_3
Description: NF20709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20709_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 13 - 411
Target Start/End: Complemental strand, 40908952 - 40908555
Alignment:
| Q |
13 |
aatatgcattgagtgtgtataatgatgctgtaaaattggtacacatggttaaggattcaaaattgagtttgattcctgttgaagtctattgcagtggagg |
112 |
Q |
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| T |
40908952 |
aatatgcattgagtgtgtataatgatgctgtaaaattgatacacatggttaaggattcaaaattgagtttgattcctgttaaagcctattgcaatgcaga |
40908853 |
T |
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| Q |
113 |
gatgttatgctaaaaatacttgatagtatatacaaatactacgcccaagtcccttgagccctattgagagtggtagcatgttgttagccataggaaagat |
212 |
Q |
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| T |
40908852 |
gaaattatgctcaaaatacttgatagaatatccaaatattacgaccaagtcccccgagccctattgagtgtggtcgcatgctgttagccataggaaagat |
40908753 |
T |
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| Q |
213 |
ctagctagacagaattcatcatgaatcatttgtagtttgttagagtgtgctaaataaactaatttatgttatgtttggcctggcataagcatgagccatc |
312 |
Q |
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| T |
40908752 |
ctatcaagacagaattcatcatgaatcatttgtagtttgttagtgtgcgctaaataaactaatttatgttatgtttagcctggcctaagcatgagccatc |
40908653 |
T |
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| Q |
313 |
ttctttcttttgctacttcttcataattttgtaaatttcttacagtttggctctatatttcaatctgctgttgtttgatattacattacaacctttatt |
411 |
Q |
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| T |
40908652 |
ttctttcttttgctgctt-ttcataattttgtaaatttcttacaattaggctctatatttcaacctgcagttgtttgatattacattacaacctttatt |
40908555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 480 - 570
Target Start/End: Complemental strand, 40905796 - 40905706
Alignment:
| Q |
480 |
gtattgccattttcctacaatatatggaaatcacttgaaataccacaacaacaaaatcaaaatctatcttatcttttattaaacaatccca |
570 |
Q |
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| T |
40905796 |
gtatagcccttttccttcaatatatggaaatcacttgaaataccaaaacaacaaaatcaaaatctagcttatcttttattagacaatccca |
40905706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 40901364 - 40901324
Alignment:
| Q |
334 |
cataattttgtaaatttcttacagtttggctctatatttca |
374 |
Q |
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| T |
40901364 |
cataattttgtaaactccttacagtttggctctagatttca |
40901324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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