View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20709_low_1 (Length: 787)
Name: NF20709_low_1
Description: NF20709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20709_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 695; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 695; E-Value: 0
Query Start/End: Original strand, 1 - 774
Target Start/End: Complemental strand, 8916047 - 8915275
Alignment:
| Q |
1 |
tttgaactgcattcaatgtaagctggtgcattaatcagcttcctcagctcttctccctttaataggacccacatgtcagatttaatttaatatacattta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8916047 |
tttgaactgcattcaatgtaagctggtgcattaatcagcttcctcagctcttctccctttaataggacccacatgtcagatttaatttaatatacattta |
8915948 |
T |
|
| Q |
101 |
acaagtagacaagatcctagagtggcagaataaaaaatcacctgagctgtggtaatgggaacggcaccaggatggtctatgcagaactgcttatcatccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8915947 |
acaagtagacaagatcctagagtggcagaataaaaaatcacctgagctgtggtaatgggaacggcaccaggatggtctatgcagaactgcttatcatccc |
8915848 |
T |
|
| Q |
201 |
gaagatctatctcgatacaaatgacaaaataataggaactaaatattaagttgaaaaaaccggtacactgatcaggaaactagcacaaccatttgtctaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8915847 |
gaagatctatctcgatacaaatgacaaaataataggaactaaatattaagtcgaaaaaaccggtacactgatcaggaaactagcacaatcatttgtctaa |
8915748 |
T |
|
| Q |
301 |
ctggaagctaacaaaactacttagagggagattattcgaaaatatttaatacaaatctggagacagggaaataccagttgcagatacaatgtatggataa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8915747 |
ctggaagctaacaaaactacttagagggagattattcgaaaatatttaatacaaatctgaagacagggaaataccagttgcagatacaatgtatggataa |
8915648 |
T |
|
| Q |
401 |
aactaaaacaaaccagaaaggcagaaacatcaaaacattgaccaaaactgatgtatcagataccagtagaaaaacaatggtgatgaaaaacaaagaatat |
500 |
Q |
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| T |
8915647 |
aactaaaacaaaccagaaaggcagaaacatcaaaacattgaccaaaactgatgcatcagataccagtagaaaaacaatggtgatgaaaaacaaagaatat |
8915548 |
T |
|
| Q |
501 |
aatagaacgaaaatgaaatgcaccagaaatnnnnnnnnnnnnnntagcaaacaaaaagaaccggttcagcagttagccagttcgacaaatggaaacttcc |
600 |
Q |
| |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8915547 |
aatagaacgaaattgaaatgcaccagaaat-ccccccttccccctagcaaacaaaaagaaccggttcagcagttagccagttcgacaaatggaaacttcc |
8915449 |
T |
|
| Q |
601 |
aaagatatctacatcatcaatatagttgattatgaaatgcatggggctatgtgatttcatcatagaaaaaccctgaataatactatacataaataatgag |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
8915448 |
aaagatatctacatcatcaatatagttgattatgaaatgcatggggctatgtgatttcatcatagaaaaaccctgattaataccatacataaataatgag |
8915349 |
T |
|
| Q |
701 |
gaagatggcatcaacatatcgatatcacattatgcagcaattaacataccaagctttgttccaaccagaattat |
774 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8915348 |
aaagatggcatcaacatatcgatatcacattatgcagcaattaacataccaagctttgttccaaccagaattat |
8915275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 31805483 - 31805408
Alignment:
| Q |
138 |
tcacctgagctgtggtaatgggaacggcaccaggatggtctatgcagaactgcttatcatcccgaagatctatctc |
213 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||| |||||||| | | |||||||||| ||||||||||| ||| |||| |
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| T |
31805483 |
tcacctgagcagtggtaataggaacagcacctggatggtcgacgaagaactgcttgtcatcccgaaggtctgtctc |
31805408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 31805646 - 31805591
Alignment:
| Q |
4 |
gaactgcattcaatgtaagctggtgcattaatcagcttcctcagctcttctccctt |
59 |
Q |
| |
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||||||||||| || ||||| |||||||| ||||||||||| |||||||||||||| |
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| T |
31805646 |
gaactgcattcgatataagcaggtgcattgatcagcttcctaagctcttctccctt |
31805591 |
T |
|
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