View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20709_low_14 (Length: 375)
Name: NF20709_low_14
Description: NF20709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20709_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 349
Target Start/End: Complemental strand, 14700471 - 14700142
Alignment:
| Q |
20 |
ggttgaatgttattattataataactggcaaacttctccattggttgcagtggctcaaagttctatggtactttgcagaatgagttaaagtacttgtttg |
119 |
Q |
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| T |
14700471 |
ggttgaatgttattattataataactggcaaacttctccattggttgcagtggctcaaagttctatggtacttcgcagaatgagttaaagtacttgtttg |
14700372 |
T |
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| Q |
120 |
tttcatgtgttgttttctcttttattgacacttataactctccaagccttctctctgtcctagaagaaaatgaaagtgcagaaattttttctataataga |
219 |
Q |
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| T |
14700371 |
tttcatgtgttgttttctcttttattgacacttataactctccaagccttttctctgtcctagaagaaaatgaaagtgcagaaattttttctataataga |
14700272 |
T |
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| Q |
220 |
aagaggtgtaagtttccacaagggcacgtaggagaaggtaaagaagcatcttattaggatttgtctttcatgaaagacagcaaaacaaattgaccaatgn |
319 |
Q |
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| T |
14700271 |
aagaggtgtaagtttccacaagggcacgtaggagaaggtaaagaagcatcttattaggatttgtctttcatgaaagacagcaaaacaaattgaccaatga |
14700172 |
T |
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| Q |
320 |
nnnnnnggatcctccccactttctgtgctc |
349 |
Q |
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|||||||||||||||||||||||| |
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| T |
14700171 |
aaaaaaggatcctccccactttctgtgctc |
14700142 |
T |
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