View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20709_low_16 (Length: 353)
Name: NF20709_low_16
Description: NF20709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20709_low_16 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 29444205 - 29443865
Alignment:
| Q |
13 |
aatatcacaaaagaatagtgatcaaaaaataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29444205 |
aatatcacaaaagaatagtgatcaaaaaataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatg |
29444106 |
T |
|
| Q |
113 |
tttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgacatcatagtgaggattctcaactaatgacggn |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29444105 |
tttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgacatcatagtgaggattctcaactaatgacgga |
29444006 |
T |
|
| Q |
213 |
nnnnnntaccaactcatacaaatattatttatttagcctacttttaaagtaaaggaatcctgcaaattccttttgcctaacttaatattttttcctcaag |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29444005 |
aaaaaataccaactcatacaaatattatttatttagcctacttttaaagtaaaggaatcctgcaaattccttttgtctaacttaatattttttcctcaag |
29443906 |
T |
|
| Q |
313 |
agaggagggttgagtttagctattcacaaggtcaactcata |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
29443905 |
agaggagggttgagtttagctattcacaaggtcaactcata |
29443865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 29422520 - 29422860
Alignment:
| Q |
16 |
atcacaaaagaatagtgatcaaaaaataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgttt |
115 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
29422520 |
atcacaaaagaatagtgataaaaaaataaatattttgaaaggacttgtacatagattttgagtaatttcattgcaggcaaatttctacccaacaatgttc |
29422619 |
T |
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| Q |
116 |
ttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgaca-----------tcatagtgagga-ttctcaact |
203 |
Q |
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|||||| |||||||||| |||||| ||||||| |||||||||||| |||||||||||||||| |||||| |||| ||| ||||| |
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| T |
29422620 |
ttatcc------acatagataccacgacagggttgaatagtctcaacattccgaaataagtttgacaaaataattatttcatagcaaggatttcacaact |
29422713 |
T |
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| Q |
204 |
aatgacggnnnnnnntaccaactcatacaaatattatttatttagcctacttttaaagtaaaggaatcctgcaaattccttttgcctaacttaatatttt |
303 |
Q |
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||||| || |||||||||||| ||||||||||| ||| | ||||| ||||| |||||||||||||||| |||||| | |||||| ||||||| |
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| T |
29422714 |
aatgaaggaaaaaaagaccaactcataccaatattatttaattaacatacttctaaagcaaaggaatcctgcaaa-tcctttggtttaacttgatatttt |
29422812 |
T |
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| Q |
304 |
ttcctcaagagaggagggttgagtttagctattcacaaggtcaactcata |
353 |
Q |
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|| ||| ||||||||||| ||||||||||| |||| |||||||||||| |
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| T |
29422813 |
ttactc--gagaggagggtggagtttagctagtcactgggtcaactcata |
29422860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 29454209 - 29454043
Alignment:
| Q |
16 |
atcacaaaagaatagtgatcaaaaaataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgttt |
115 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29454209 |
atcacaaaagaatagtgataaaaaaataaatattttgaaaggacttgtacatagattttgagtaatttcattgcaggcaaatttctacacaacaatgttc |
29454110 |
T |
|
| Q |
116 |
ttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgaca |
182 |
Q |
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| T |
29454109 |
ttatccttaaatacatagataccacaacagggtggaatagactcaacattccgaaataagtttgaca |
29454043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 48 - 353
Target Start/End: Complemental strand, 29468637 - 29468358
Alignment:
| Q |
48 |
ttttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgtttttatccttaaatacatagatacaacgacaagg |
147 |
Q |
| |
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|||||||| || |||||||||||||| || ||| |||||||| ||||||||||||||||||||||| |||||| |||||||| | | |||| || |
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| T |
29468637 |
ttttgaaatgaattatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatcc------acatagatgccatgacaggg |
29468544 |
T |
|
| Q |
148 |
ttgaacagtctcaacatttcgaaataagtttgacatcatagtgaggattctcaactaatgacggnnnnnnntaccaactcatacaaatattatttattta |
247 |
Q |
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| ||||| |||| |||||||||||||||| |||||||||| |||||| ||||| || |||||||||||| |||||||| || | | |
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| T |
29468543 |
tcgaaca---------tttcaaaataagtttgacatcgtagtgaggat-ctcaaccaatgaaggaaaaaaagaccaactcataccaatattatatactca |
29468454 |
T |
|
| Q |
248 |
gcctacttttaaagtaaaggaatcctgcaaattccttttgcctaacttaatattttttcctcaagagaggagggttgagtttagctattcacaaggtcaa |
347 |
Q |
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||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| | |||||||||||| |
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| T |
29468453 |
acctacatttaaagtaaaggaatcctgcaaa-tccttttgtctaacttaatattttttcct---------agggttgagtttagccagtcacaaggtcaa |
29468364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 29473751 - 29473678
Alignment:
| Q |
48 |
ttttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgtttttatcc |
121 |
Q |
| |
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|||||||| || |||||||||||||| || ||| |||||||| ||||||||||||||||||||||| |||||| |
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| T |
29473751 |
ttttgaaatgaattatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatcc |
29473678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 29453990 - 29453932
Alignment:
| Q |
220 |
accaactcatacaaatattatttatttagcctacttttaaagtaaaggaatcctgcaaat |
279 |
Q |
| |
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|||||||||||| ||||||||||||||| |||||||||||| |||| ||||||||||||| |
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| T |
29453990 |
accaactcataccaatattatttatttaacctacttttaaattaaa-gaatcctgcaaat |
29453932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 12019750 - 12019598
Alignment:
| Q |
13 |
aatatcacaaaagaatagtgatcaaaaa-ataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaat |
111 |
Q |
| |
|
||||||||||| |||||||||| || || |||||||||||||||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||||| |
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| T |
12019750 |
aatatcacaaatgaatagtgataaataatataaatattttgaaaggaattatacatagatttggagtaa-ttcattgcaggtaaatttctacacaacaat |
12019652 |
T |
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| Q |
112 |
gtttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatt |
165 |
Q |
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|| ||||||||||||||| |||||| || ||| ||| ||| |||||||||||| |
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| T |
12019651 |
attcttatccttaaatacacagataccacaacagggtggaatagtctcaacatt |
12019598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 12007104 - 12006934
Alignment:
| Q |
13 |
aatatcacaaaagaatagtgatcaaaaa-ataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaat |
111 |
Q |
| |
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||||||||| | |||||||||| || || |||||||||||||||||| ||||||||||| || |||||| |||||| ||| ||||||||||| |||||| |
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| T |
12007104 |
aatatcacagatgaatagtgataaataatataaatattttgaaaggaattatacatagagttggagtaatttcattaaaggtaaatttctacagaacaat |
12007005 |
T |
|
| Q |
112 |
gtttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgaca |
182 |
Q |
| |
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|| ||||||||||||||| |||||| || ||| ||| ||| | ||||||||||| ||||||||||||||| |
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| T |
12007004 |
attcttatccttaaatacacagataccacaacagggtggaataatctcaacattttgaaataagtttgaca |
12006934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 63 - 182
Target Start/End: Complemental strand, 11988229 - 11988111
Alignment:
| Q |
63 |
tacatagattttgagtaaattcattgcaggcaaatttcta-cacaacaatgtttttatccttaaatacatagatacaacgacaaggttgaacagtctcaa |
161 |
Q |
| |
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||||| ||||| |||| | ||||||||| | ||||||||| |||||||| ||| ||||||||| |||| |||||| || ||| ||| ||| |||| ||| |
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| T |
11988229 |
tacattgatttggagttatttcattgcaagaaaatttctaacacaacaacgttcttatcctta--tacacagataccacaacagggtagaatagtcacaa |
11988132 |
T |
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| Q |
162 |
catttcgaaataagtttgaca |
182 |
Q |
| |
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||||||||||||||||||||| |
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| T |
11988131 |
catttcgaaataagtttgaca |
11988111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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