View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20709_low_19 (Length: 315)
Name: NF20709_low_19
Description: NF20709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20709_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 8916339 - 8916053
Alignment:
| Q |
16 |
ccaacttcttcaataacaaagaaaatgatgaaaagaaggggaggggaatacaggtagaacaaaggacaatcaaatgtttacacctagtgaattacaatat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8916339 |
ccaacttcttcaataacaaagaaaatgatgaaaagaaggggaggggaatacaggtagaacaaaggacaatcaaatgtttacacctagtgaattacaatat |
8916240 |
T |
|
| Q |
116 |
tgaacaggccttttgtgctttattcttctttttcttctgctttggtggttgaaggacaactcttatggctgcatcaaacaccgccttcacgttctgcaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8916239 |
tgaacaggccttttgtgctttattcttctttttcttctgctttggtggttgaaggacaactcttatggctgcatcaaacaccgccttcacgttctgcaat |
8916140 |
T |
|
| Q |
216 |
caatacatccaacaaacttaaacttcacattaaattaaccattgtgaattagaagaaacaaattaatcaaaaaaccatatacctcct |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8916139 |
caatacatccaacaaacttaaacttcacattaaattaaccattgtgaattagaagaaacaaattaatcaaaaaaccatatacctcct |
8916053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 31805850 - 31805744
Alignment:
| Q |
109 |
acaatattgaacaggccttttgtgctttattcttctttttcttctgctttggtggttgaaggacaactcttatggctgcatcaaacaccgccttcacgtt |
208 |
Q |
| |
|
||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| || |
|
|
| T |
31805850 |
acaatatcgaacaagccttttgtgctttactcttctttttcttttgctttggtggttgaaggacaactcttatggctgcatcaaagactgctttcacatt |
31805751 |
T |
|
| Q |
209 |
ctgcaat |
215 |
Q |
| |
|
||||||| |
|
|
| T |
31805750 |
ctgcaat |
31805744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University