View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20709_low_2 (Length: 712)

Name: NF20709_low_2
Description: NF20709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20709_low_2
NF20709_low_2
[»] chr6 (12 HSPs)
chr6 (347-694)||(15512601-15512948)
chr6 (11-249)||(15513045-15513283)
chr6 (414-694)||(15505411-15505691)
chr6 (414-694)||(15984752-15985032)
chr6 (416-694)||(16327742-16328017)
chr6 (347-692)||(16351098-16351434)
chr6 (347-390)||(15984702-15984745)
chr6 (196-249)||(15984558-15984611)
chr6 (197-249)||(15505832-15505884)
chr6 (198-249)||(16327548-16327599)
chr6 (347-390)||(16327690-16327733)
chr6 (216-249)||(16350974-16351007)
[»] chr1 (1 HSPs)
chr1 (11-203)||(15211064-15211253)


Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 347 - 694
Target Start/End: Complemental strand, 15512948 - 15512601
Alignment:
Q  347 ttcacgcactcagatcatagttagcgtgaatgcgtggtccttctaacttttgattttattcaaatcgccgatgatcttctagctctagcagcatcattaa 446  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15512948 ttcacgcattcagatcatagttagcgtgaatgcatggtccttctaacttttgattttattcaaatcgccgatgatcttctagctctagcagcatcattaa 15512849  T
Q  447 cgttaacgaataccgctcctaaggcatcaccatccatttcatagaccaaacgcattccattttcgtcattcttcctacttaagtaaatacattcacctag 546  Q
     |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15512848 tgttaacgaataccgctgctaaggcatcaccatccatttcatagaccaaacgcattccatttttgtcattcttcctacttaagtaaatacattcacctag 15512749  T
Q  547 tgtaggagataacttgtgacagaaatagataaggtatcccgttttcttgtatccaataatttcaaaccagccatcatcataaaccttctttccagtacca 646  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15512748 tgtaggagataacttgtgacagaaatagataaggtatcccgttttcttgtatccaataatttcaaaccagccatcatcataaaccttctttccagtacca 15512649  T
Q  647 tcaatagccagccatggtgtagggtactcattttctgcttcaaccacc 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15512648 tcaatagccagccatggtgtagggtactcattttctgcttcaaccacc 15512601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 15513283 - 15513045
Alignment:
Q  11 gttgaccatgtaattatctgataacataggtagtttctggaatatctcttgtattttaatagcatatctcatacataatttccttatcaatatctcctaa 110  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513283 gttgaccatgtaattatctgataacataggtagcttctggaatatctcttgtattttaatagcatatctcatacataatttccttatcaatatctcctaa 15513184  T
Q  111 tctttaggcatgtagcttgggaaatttgttgtggatattcctttgacagtgaatgagaaaatcaaacaattacctcttattatttcttt-attaaaattt 209  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||    
T  15513183 tctttaggcatgtagcttgggaaatttgttgtatatattcctttgacagtgaatgagaaaatcaaacaatcacctcttat-atttcttttattaaaattt 15513085  T
Q  210 aaatatgattacaaagagtacttaaactcattacagggat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15513084 aaatatgattacaaagagtacttaaactcattacagggat 15513045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 414 - 694
Target Start/End: Complemental strand, 15505691 - 15505411
Alignment:
Q  414 ccgatgatcttctagctctagcagcatcattaacgttaacgaataccgctcctaaggcatcaccatccatttcatagaccaaacgcattccattttcgtc 513  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15505691 ccgatgatcttcgagctctagcagcatcattaacgttaacgaataccgctcctaaggcatcaccatccatttcatagaccaaacgcattccattttcgtc 15505592  T
Q  514 attcttcctacttaagtaaatacattcacctagtgtaggag---ataacttgtgacagaaatagataaggtatcccgttttcttgtatccaataatttca 610  Q
    |||| |||||||||| ||||||||| ||||| |||||||||   ||||||||||||||||| |||||||||||||||| |||||| ||||||  ||   |    
T  15505591 attcctcctacttaaataaatacatacacctggtgtaggagataataacttgtgacagaaaaagataaggtatcccgtcttcttgaatccaactatcata 15505492  T
Q  611 aaccagccatcatcataaaccttctttccagtaccatcaatagccagccatggtgtagggtactcattttctgcttcaaccacc 694  Q
    ||  |   | |||||||||| |||||    ||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  15505491 aaata---accatcataaacattcttgtttgtaccatcaatagtcacccatggtgtagggtactcattttctgcttcaaccacc 15505411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 414 - 694
Target Start/End: Original strand, 15984752 - 15985032
Alignment:
Q  414 ccgatgatcttctagctctagcagcatcattaacgttaacgaataccgctcctaaggcatcaccatccatttcatagaccaaacgcattccattttcgtc 513  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15984752 ccgatgatcttcgagctctagcagcatcatcaacgttaacgaataccgctcctaaggcatcgccatccatttcatagaccaaacgcattccattttcgtc 15984851  T
Q  514 attcttcctacttaagtaaatacattcacctagtgtaggagataa---cttgtgacagaaatagataaggtatcccgttttcttgtatccaataatttca 610  Q
    |||| |||||||||| ||||||||| ||||| |||||||||||||   ||||||||||||| |||||||||||||||| |||||| ||||||  |||| |    
T  15984852 attcctcctacttaaataaatacatacacctcgtgtaggagataataacttgtgacagaaaaagataaggtatcccgtcttcttgaatccaactatttga 15984951  T
Q  611 aaccagccatcatcataaaccttctttccagtaccatcaatagccagccatggtgtagggtactcattttctgcttcaaccacc 694  Q
    ||||| |||||||   |||| |||||    ||||||||||||| || |||||||| |||||||||||||||| |||||||||||    
T  15984952 aaccaaccatcat---aaacattcttgtttgtaccatcaatagtcacccatggtgcagggtactcattttcttcttcaaccacc 15985032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 416 - 694
Target Start/End: Original strand, 16327742 - 16328017
Alignment:
Q  416 gatgatcttctagctctagcagcatcattaacgttaacgaataccgctcctaaggcatcaccatccatttcatagaccaaacgcattccattttcgtcat 515  Q
    ||||||| || ||||||| ||  ||||| ||||||||||||||||||| |||||  |||||||||    ||| ||||||||||||||||||||| |||||    
T  16327742 gatgatcctcgagctctaacaatatcatcaacgttaacgaataccgctgctaagtaatcaccatca---tcaaagaccaaacgcattccatttttgtcat 16327838  T
Q  516 tcttcctacttaagtaaatacattcacctagtgtaggagataacttgtgacagaaatagataaggtatcccgttttcttgtatccaataatttcaaacca 615  Q
    |||||||||| |  |||  |||||||||| |||||| ||||||||||||||||||||||||||| ||||| ||| ||| |||| |||||| |||||||||    
T  16327839 tcttcctactaatataacgacattcacctcgtgtagaagataacttgtgacagaaatagataagatatccggttctctcgtatgcaataagttcaaacca 16327938  T
Q  616 gccatcatcataaaccttctttccagtaccatcaatagccagccatggtgtagggtactcattttctgcttcaaccacc 694  Q
     |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16327939 accatcatcataaacattctttccagtaccatcaatagccagccatggtgtagggtactcattttctgcttcaaccacc 16328017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 347 - 692
Target Start/End: Original strand, 16351098 - 16351434
Alignment:
Q  347 ttcacgcactcagatcatagttagcgtgaatgcgtggtccttctaacttttgattttattcaaatcgccgatgatcttctagctctagcagcatcattaa 446  Q
    |||| ||| ||||||||||| |||||||||||||||||||||||||||||  ||||||||||||   | |||||| ||| ||||||||||||||||| |     
T  16351098 ttcatgcattcagatcataggtagcgtgaatgcgtggtccttctaactttcaattttattcaaactactgatgatattcgagctctagcagcatcatcat 16351197  T
Q  447 cgttaacgaataccgctcctaaggcatcaccat--cca----tttcatagaccaaacgcattccattttcgtcattcttcctacttaagtaaatacattc 540  Q
    | |||||||||||||||||||||||||||||||  |||    ||||||||||||||||||||||||||| ||||||||||||||| || ||||||||  |    
T  16351198 ccttaacgaataccgctcctaaggcatcaccatcaccatcagtttcatagaccaaacgcattccatttttgtcattcttcctactcaaataaatacaacc 16351297  T
Q  541 acctagtgtaggagataacttgtgacagaaatagataaggtatcccgttttcttgtatccaataatttcaaaccagccatcatcataaaccttctttcca 640  Q
    | |   |            |||| ||||||| ||||||||||||||| | ||||||||| | ||| |||||||||   | |||||| ||| |||||||||    
T  16351298 atcattt------------ttgtaacagaaaaagataaggtatcccgatctcttgtatctagtaagttcaaacca---accatcatgaacattctttcca 16351382  T
Q  641 gtaccatcaatagccagccatggtgtagggtactcattttctgcttcaacca 692  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16351383 gtaccatcaatagccagccatggtgtagggaactcattttctgcttcaacca 16351434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 347 - 390
Target Start/End: Original strand, 15984702 - 15984745
Alignment:
Q  347 ttcacgcactcagatcatagttagcgtgaatgcgtggtccttct 390  Q
    |||||||| ||||||||||| |||||||||||||||||||||||    
T  15984702 ttcacgcattcagatcataggtagcgtgaatgcgtggtccttct 15984745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 15984558 - 15984611
Alignment:
Q  196 ctttattaaaatttaaatatgattacaaagagtacttaaactcattacagggat 249  Q
    ||||||| ||||| | ||| ||||||||||||||||||||||||||||| ||||    
T  15984558 ctttattgaaattgagatacgattacaaagagtacttaaactcattacatggat 15984611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 15505884 - 15505832
Alignment:
Q  197 tttattaaaatttaaatatgattacaaagagtacttaaactcattacagggat 249  Q
    |||||||||||| | |||||||||||||| ||||||||||||| |||| ||||    
T  15505884 tttattaaaattgagatatgattacaaagcgtacttaaactcactacatggat 15505832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 16327548 - 16327599
Alignment:
Q  198 ttattaaaatttaaatatgattacaaagagtacttaaactcattacagggat 249  Q
    ||||| ||||| | ||| ||||||||||||||||||||||||||||| ||||    
T  16327548 ttattgaaattgagatacgattacaaagagtacttaaactcattacatggat 16327599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 390
Target Start/End: Original strand, 16327690 - 16327733
Alignment:
Q  347 ttcacgcactcagatcatagttagcgtgaatgcgtggtccttct 390  Q
    |||||||| ||||||||||| ||||||||||||| |||||||||    
T  16327690 ttcacgcattcagatcataggtagcgtgaatgcgcggtccttct 16327733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 16350974 - 16351007
Alignment:
Q  216 gattacaaagagtacttaaactcattacagggat 249  Q
    ||||||||||||||||||||||||||||| ||||    
T  16350974 gattacaaagagtacttaaactcattacatggat 16351007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 15211064 - 15211253
Alignment:
Q  11 gttgaccatgtaattatctgataacataggtagtttctggaatatctcttgtattttaatagcatatctcatacataatttccttatcaatatctcctaa 110  Q
    |||||| |||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  15211064 gttgacaatgtaattatctcatagcataggtagcttctggaatatctcttgtattttaatagtatatctcatacataatttcctcatcaatatctcctaa 15211163  T
Q  111 tctttaggcatgtagcttgggaaatttgttgtggatattcctttgacagtgaatgagaaaatcaaacaattacctcttattatttctttatta 203  Q
    |||||||||||||||||||| ||||||||     |||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||    
T  15211164 tctttaggcatgtagcttggaaaatttgtac---atattcctttgacagtgaatgagaaaatcagacaattacctcatattctttctttatta 15211253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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