View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20709_low_23 (Length: 242)

Name: NF20709_low_23
Description: NF20709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20709_low_23
NF20709_low_23
[»] chr7 (11 HSPs)
chr7 (19-242)||(4864734-4864957)
chr7 (40-184)||(4637684-4637831)
chr7 (24-184)||(4654310-4654473)
chr7 (24-184)||(4711202-4711365)
chr7 (24-184)||(4845130-4845293)
chr7 (36-184)||(4782950-4783101)
chr7 (36-184)||(4815379-4815530)
chr7 (32-163)||(4644514-4644648)
chr7 (41-165)||(4696318-4696442)
chr7 (36-165)||(4673529-4673664)
chr7 (39-118)||(4663525-4663604)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 4864734 - 4864957
Alignment:
Q  19 gaagcggaactaggtgatgttttaagagatgggtttgtggttttttgttcaatgaaagtaaagagatttttgttatcaatattatcaccaacccaaattc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4864734 gaagcggaactaggtgatgttttaagagatgggtttgtggttttttgttcaatgaaagtaaagagatttttgttatcaatattatcaccaacccaaattc 4864833  T
Q  119 gtttatctaaggtagtatttgttgtggagccacaaccgatggctaaactgaaatcagggctgtatgctattgatttagctactnnnnnnnngaataggaa 218  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  4864834 gtttatctaaggtagtatttgttgaggagccacaaccgatggctaaactgaaatcagggctgtatgctattgatttagctactaaaaaaaagaataggaa 4864933  T
Q  219 aaggagagatagtagggtgatttt 242  Q
    ||||||||||||||||||||||||    
T  4864934 aaggagagatagtagggtgatttt 4864957  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 184
Target Start/End: Original strand, 4637684 - 4637831
Alignment:
Q  40 ttaagagatgggtttgtggttttttgttcaatgaaagtaaagagatttttgttatcaatattatcaccaacccaaattcgtttatctaaggtagtatt-- 137  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||      
T  4637684 ttaaaagatgggtttgtggtttttggttcaatgaaagtaaagagatttttgttattaatattatcaccaacccaaattcgtttatctaaggcagtattgt 4637783  T
Q  138 -tgttgtggagccacaaccgatggctaaactgaaatcagggctgtatg 184  Q
      |||  ||||||||||  |||||||||| || |||||||| ||||||    
T  4637784 cggttaaggagccacaattgatggctaaattgtaatcagggttgtatg 4637831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 4654310 - 4654473
Alignment:
Q  24 ggaactaggtgatgttttaagagatgggtttgtggttttttgttcaatgaaagtaaagagatttttgttatcaatattatcaccaacccaaattcgttta 123  Q
    ||||||| ||| |||| ||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||    
T  4654310 ggaactacgtggtgttgtaagagatgggttcgtggtttttggttcaatgaaagtaaagatatttttgttatcaatattctcaccaatccaaattcgttta 4654409  T
Q  124 tctaaggtagta---tttgttgtggagccacaaccgatggctaaactgaaatcagggctgtatg 184  Q
    ||||||||||||   | ||||  |||||||||| |||| |||||| || |||||||| ||||||    
T  4654410 tctaaggtagtagtgtctgttagggagccacaatcgatagctaaattgtaatcagggttgtatg 4654473  T

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Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 4711365 - 4711202
Alignment:
Q  24 ggaactaggtgatgttttaagagatgggtttgtggttttttgttcaatgaaagtaaagagatttttgttatcaatattatcaccaacccaaattcgttta 123  Q
    |||| ||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||  ||||||||||||||||||||||||||||||  ||    
T  4711365 ggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgacta 4711266  T
Q  124 tctaag---gtagtatttgttgtggagccacaaccgatggctaaactgaaatcagggctgtatg 184  Q
    ||||||   ||||| ||||||| | ||||||||  |||||||||| || |||||||| ||||||    
T  4711265 tctaaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatg 4711202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 4845293 - 4845130
Alignment:
Q  24 ggaactaggtgatgttttaagagatgggtttgtggttttttgttcaatgaaagtaaagagatttttgttatcaatattatcaccaacccaaattcgttta 123  Q
    |||| |||| |||| ||||| |||||| |||||||||||| |||||||||| ||||||||||||  |||||||||||||||||||| |||||||||||||    
T  4845293 ggaattaggagatgatttaaaagatggatttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaatccaaattcgttta 4845194  T
Q  124 tctaagg---tagtatttgttgtggagccacaaccgatggctaaactgaaatcagggctgtatg 184  Q
    |||||||    | | ||||||| ||| ||||||  |||||||||| || |||||||| ||||||    
T  4845193 tctaaggcaacattgtttgttgaggaaccacaattgatggctaaattgtaatcagggttgtatg 4845130  T

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Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 4783101 - 4782950
Alignment:
Q  36 tgttttaagagatgggtttgtggttttttgttcaatgaaagtaaagagatttttgttatcaatattatcaccaacccaaattcgtttatctaag---gta 132  Q
    |||||||||||||||||||||  ||||| |||||||||| | |||||||||   ||||||||| |||||| ||||||||||||||  ||| |||   |||    
T  4783101 tgttttaagagatgggtttgtattttttggttcaatgaaggaaaagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagta 4783002  T
Q  133 gtatttgttgtggagccacaaccgatggctaaactgaaatcagggctgtatg 184  Q
    || ||||||| ||||||||||| ||||||||||||| |||||||| ||||||    
T  4783001 gtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatg 4782950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 4815530 - 4815379
Alignment:
Q  36 tgttttaagagatgggtttgtggttttttgttcaatgaaagtaaagagatttttgttatcaatattatcaccaacccaaattcgtttatctaag---gta 132  Q
    |||||||||||||||||||||  ||||| |||||||||| | |||||||||   ||||||||| |||||| ||||||||||||||  ||| |||   |||    
T  4815530 tgttttaagagatgggtttgtattttttggttcaatgaaggaaaagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagta 4815431  T
Q  133 gtatttgttgtggagccacaaccgatggctaaactgaaatcagggctgtatg 184  Q
    || ||||||| ||||||||||| ||||||||||||| |||||||| ||||||    
T  4815430 gtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatg 4815379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 4644514 - 4644648
Alignment:
Q  32 gtgatgttttaagagatgggtttgtggttttttgttcaatgaaagtaaagagatttttgttatcaatattatcaccaacccaaattcgtttatctaag-- 129  Q
    ||||||||||| ||||||| || ||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||  ||||||||      
T  4644514 gtgatgttttaggagatggattagtggtttttggttcaatgaaagtaaagagttttgtgttatcattattatcaccaacccaaattcgactatctaaggc 4644613  T
Q  130 -gtagtatttgttgtggagccacaaccgatggcta 163  Q
     ||||| || |||| |||||||||||  |||||||    
T  4644614 agtagtgttcgttgaggagccacaactaatggcta 4644648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 4696442 - 4696318
Alignment:
Q  41 taagagatgggtttgtggttttttgttcaatgaaagtaaagagatttttgttatcaatattatcaccaacccaaattcgtttatctaaggtagtatttgt 140  Q
    ||||||||| ||||||||||||| ||||| |||| | |||||| ||| |||||||| |||||||||||||||| |||||||| || |||||||| | ||     
T  4696442 taagagatgtgtttgtggtttttggttcattgaaggaaaagagttttgtgttatcattattatcaccaacccatattcgtttgtcgaaggtagtgtctga 4696343  T
Q  141 tgtggagccacaaccgatggctaaa 165  Q
    || ||||||||||  ||||||||||    
T  4696342 tgaggagccacaattgatggctaaa 4696318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 4673529 - 4673664
Alignment:
Q  36 tgttttaagagatgggtttgtggttttttgttcaatgaaagtaaagagatttttgttatcaa---tattatcaccaacccaaattcgtttatctaaggta 132  Q
    |||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||||| ||   |||||||||||||||| ||||| ||||| ||||||    
T  4673529 tgttgtaagagatgggtatgtggtttttggttcaatgaaagtaaagagatttgtgttattaatattattatcaccaacccacattcggttatcgaaggta 4673628  T
Q  133 g---tatttgttgtggagccacaaccgatggctaaa 165  Q
    |   | ||||||| ||| ||||||  ||||||||||    
T  4673629 gcattgtttgttgaggaaccacaattgatggctaaa 4673664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 4663525 - 4663604
Alignment:
Q  39 tttaagagatgggtttgtggttttttgttcaatgaaagtaaagagatttttgttatcaatattatcaccaacccaaattc 118  Q
    |||||||||||| ||| | |||||| | |||| ||||| |||||| | | |||||||| |||||||||||||||||||||    
T  4663525 tttaagagatggattttttgtttttggctcaaggaaagaaaagagttctgtgttatcattattatcaccaacccaaattc 4663604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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