View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20709_low_26 (Length: 201)

Name: NF20709_low_26
Description: NF20709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20709_low_26
NF20709_low_26
[»] chr3 (3 HSPs)
chr3 (34-189)||(16456696-16456851)
chr3 (3-98)||(36086854-36086949)
chr3 (1-91)||(7404088-7404178)
[»] chr8 (3 HSPs)
chr8 (61-138)||(31367833-31367910)
chr8 (1-91)||(25640982-25641072)
chr8 (1-91)||(27813831-27813921)
[»] chr2 (3 HSPs)
chr2 (1-93)||(31481900-31481992)
chr2 (1-91)||(31332109-31332200)
chr2 (1-91)||(31338839-31338930)
[»] chr6 (1 HSPs)
chr6 (1-91)||(30824928-30825018)
[»] chr5 (1 HSPs)
chr5 (1-77)||(7413010-7413086)
[»] chr1 (2 HSPs)
chr1 (29-85)||(47694300-47694356)
chr1 (9-93)||(47799653-47799737)
[»] chr7 (1 HSPs)
chr7 (1-81)||(27137540-27137619)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 4e-83; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 34 - 189
Target Start/End: Original strand, 16456696 - 16456851
Alignment:
Q  34 gtttggattctgtaaaatgaatggaattgtttgtttggaatgcaattatgtgcaaattctttactaaggggatcatatcaacgtttttaagcatgttaca 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456696 gtttggattctgtaaaatgaatggaattgtttgtttggaatgcaattatgtgcaaattctttactaaggggatcatatcaacgtttttaagcatgttaca 16456795  T
Q  134 ttatgtgcaaattcgtttatgtcattcttcacaataagttaagcttgttcagatca 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456796 ttatgtgcaaattcgtttatgtcattcttcacaataagttaagcttgttcagatca 16456851  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 36086949 - 36086854
Alignment:
Q  3 tgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgcaattatgtgcaaattctttact 98  Q
    ||||||| |||||| || ||| ||| ||||||||||||||||| ||||  |||||||||||||||| ||||||  ||| ||||||| |||||||||    
T  36086949 tgattcttctgcacataagctcgtttaaggtgtttggattctgcaaaactaatggaattgtttgttaggaatgtgattgtgtgcaagttctttact 36086854  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 7404088 - 7404178
Alignment:
Q  1 tgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgcaattatgtgcaaatt 91  Q
    ||||||||||||||| |||||||  | ||| || ||| ||||||| ||||||||  |||||||||||| ||||||| |||||||| |||||    
T  7404088 tgtgattctcctgcatctatgctcttaaaatgtttttcgattctgcaaaatgaacagaattgtttgttcggaatgcgattatgtgtaaatt 7404178  T

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Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 31367910 - 31367833
Alignment:
Q  61 tgtttgtttggaatgcaattatgtgcaaattctttactaaggggatcatatcaacgtttttaagcatgttacattatg 138  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  31367910 tgtttgtttggaatgcaattatgttcaaattctttacttaggggatcatatcaatgtttttaagcatgttacattatg 31367833  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 25641072 - 25640982
Alignment:
Q  1 tgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgcaattatgtgcaaatt 91  Q
    ||||||||||||||| |||||||  | ||| || ||| ||||||| ||||||||  |||||||||||| ||||||| |||||||| |||||    
T  25641072 tgtgattctcctgcatctatgctcttaaaatgtttttcgattctgcaaaatgaacagaattgtttgttcggaatgcgattatgtgtaaatt 25640982  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 27813921 - 27813831
Alignment:
Q  1 tgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgcaattatgtgcaaatt 91  Q
    ||||||||||||||| |||||||  ||||| |||||| ||||||| |||| ||| ||| |||||||||  |||||| |||||||| |||||    
T  27813921 tgtgattctcctgcatctatgctctttaaatgtgtttcgattctgcaaaacgaacggatttgtttgttcagaatgcgattatgtgtaaatt 27813831  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 31481992 - 31481900
Alignment:
Q  1 tgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgcaattatgtgcaaattct 93  Q
    ||||||||| |||| ||||||||||||||| |  ||||||||||| |||| |||||| |||||||||||||||||| ||||| || |||||||    
T  31481992 tgtgattcttctgcccctatgcttgttaaatgcatttggattctgcaaaacgaatggcattgtttgtttggaatgcgattatctgaaaattct 31481900  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 31332109 - 31332200
Alignment:
Q  1 tgtgattctcctgcacctatgcttgttaaag-gtgtttggattctgtaaaatgaatggaattgtttgtttggaatgcaattatgtgcaaatt 91  Q
    ||||||||||||||| |||||||  | |||  || ||| ||||||| ||||||||  |||||||||||| ||||||| |||||||| |||||    
T  31332109 tgtgattctcctgcatctatgctcttaaaaatgtttttcgattctgcaaaatgaacagaattgtttgttcggaatgcgattatgtgtaaatt 31332200  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 31338839 - 31338930
Alignment:
Q  1 tgtgattctcctgcacctatgcttgttaaag-gtgtttggattctgtaaaatgaatggaattgtttgtttggaatgcaattatgtgcaaatt 91  Q
    ||||||||||||||| |||||||  | |||  || ||| ||||||| ||||||||  |||||||||||| ||||||| |||||||| |||||    
T  31338839 tgtgattctcctgcatctatgctcttaaaaatgtttttcgattctgcaaaatgaacagaattgtttgttcggaatgcgattatgtgtaaatt 31338930  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 30825018 - 30824928
Alignment:
Q  1 tgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgcaattatgtgcaaatt 91  Q
    ||||||||||||||| |||||||  ||||| |||||| |||| || |||| ||| ||| ||||||||| ||||||| |||||||| |||||    
T  30825018 tgtgattctcctgcatctatgctctttaaatgtgtttcgattttgcaaaacgaacggatttgtttgttcggaatgcgattatgtgtaaatt 30824928  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7413086 - 7413010
Alignment:
Q  1 tgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgca 77  Q
    ||||||||||| ||| |||||||  ||||| ||||||  |||||| |||| ||| ||||||||||||| ||||||||    
T  7413086 tgtgattctccagcatctatgctctttaaatgtgtttcaattctgcaaaacgaacggaattgtttgttcggaatgca 7413010  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 47694300 - 47694356
Alignment:
Q  29 aaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgcaattatgtg 85  Q
    ||||||||||| ||||| | |||||| ||||||||||||||| ||||| ||||||||    
T  47694300 aaggtgtttggtttctgcacaatgaacggaattgtttgtttgtaatgcgattatgtg 47694356  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 47799653 - 47799737
Alignment:
Q  9 tcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgcaattatgtgcaaattct 93  Q
    ||||| |||| |||||||||||||| |||| |||||| |||| |||| ||| | |||||| ||||||| ||||| ||||| ||||    
T  47799653 tcctgaacctttgcttgttaaaggtctttgaattctgcaaaacgaatagaagtttttgttcggaatgcgattatatgcaatttct 47799737  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 27137619 - 27137540
Alignment:
Q  1 tgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaatt-gtttgtttggaatgcaatta 81  Q
    |||||||||| ||||| |||||||||||  |||||||| |||| | |||| |||||||||| ||||||||||| ||||||||    
T  27137619 tgtgattctcttgcac-tatgcttgttac-ggtgtttgaattccgaaaaacgaatggaatttgtttgtttggattgcaatta 27137540  T

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