View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20709_low_3 (Length: 606)
Name: NF20709_low_3
Description: NF20709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20709_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 535; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 42 - 592
Target Start/End: Complemental strand, 42004675 - 42004125
Alignment:
| Q |
42 |
tcttaattcattattttctaacaccaattcagaatgggaatgattcaagattcttatgagattaattttaatagttttggtttgtggaaatatgaaaata |
141 |
Q |
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| T |
42004675 |
tcttaattcattattttctaacaccaattcagaatgggaatgattcaagattcttatgagattaattttaatagttttggtttgtggaaatatgaaaata |
42004576 |
T |
|
| Q |
142 |
atctaagttgataattttgttcttttgtttgtcttctacaccagattcttgaaaatcttccttggttagaagaatggctacttaatagtcaggatgactg |
241 |
Q |
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| T |
42004575 |
atctaagttgataattttgttcttttgtttgtcttctacaccagattcttgaaaatcttccttggttagaagaatggctacttaatagtgaggatgactg |
42004476 |
T |
|
| Q |
242 |
tgaagagatggataacattgacctgccgctgaatctattggattcatagcaacttcccgaaacattttcttggttcgaagatttcattcaaagccagtct |
341 |
Q |
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| T |
42004475 |
tgaagagatggataacattgacctgccgctgaatctattggattcacagcaacttcccgaaacattttcttggttcgaagatttcattcaaagccagtct |
42004376 |
T |
|
| Q |
342 |
ccgaaaagacacagggaaaatgacgaacaaaagaaccagcctagtctttcggcatatgctcatctaggaccagagcagttgaagaaagacaaggaagagt |
441 |
Q |
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| T |
42004375 |
ccgaaaagacacagggaaaatgacgaacaaaagaaccagcctagtctttcggcatatgctcatctaggaccagagcagttgaagaaagacaaggaagagt |
42004276 |
T |
|
| Q |
442 |
gccaaaatcttgaccacactggcaatgtacagcttgactcagaatcttccgacattcgattaagtcaacaggtactttcctatgctctcaatgatcttcc |
541 |
Q |
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| T |
42004275 |
gccaaaatcttgaccacactggcaatgtacagcttgactcagaatcttccgacattcgattaagtcaacaggtactttcctatgctctcaatgatcttcc |
42004176 |
T |
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| Q |
542 |
attacgttaaattcattttagttttgtcacacaaaatttttactatctgtg |
592 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42004175 |
attatgttaaactcattttagttttgtcacacaaaatttttactatctgtg |
42004125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 42013600 - 42013476
Alignment:
| Q |
121 |
gtttgtggaaatatgaaaataatctaagttgataattttgttcttttgtttgtcttctacaccagattcttgaaaatcttccttggttagaagaatggct |
220 |
Q |
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||||||||||||||||| |||| ||| ||||| ||||||| |||||||||||||||||| | |||||||| ||||||| || |||| ||||||||| |
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| T |
42013600 |
gtttgtggaaatatgaacataacctatgttgacaattttgatcttttgtttgtcttctataacagattctaccaaatctttctcggtt---agaatggct |
42013504 |
T |
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| Q |
221 |
acttaatagtcaggatgactgtgaagag |
248 |
Q |
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|||| | ||||||||||| ||||||||| |
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| T |
42013503 |
acttgaaagtcaggatgattgtgaagag |
42013476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 252 - 454
Target Start/End: Complemental strand, 42013304 - 42013102
Alignment:
| Q |
252 |
gataacattgacctgccgctgaatctattggattcatagcaacttcccgaaacattttcttggttcgaagatttcattcaaagccagtctccgaaaagac |
351 |
Q |
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|||||| |||||||| ||| |||| ||||||||||| |||||||| | ||| | |||| | ||||| ||||||| |||| ||||||||||||||||| |
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| T |
42013304 |
gataactttgacctgtcgcagaatttattggattcacagcaacttgcggaaggactttccttgttcgcagatttctttcagagccagtctccgaaaaggg |
42013205 |
T |
|
| Q |
352 |
acagggaaaatgacgaacaaaagaaccagcctagtctttcggcatatgctcatctaggaccagagcagttgaagaaagacaaggaagagtgccaaaatct |
451 |
Q |
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| |||||| | || |||| | | | ||||||||||| | |||||||||| ||||| ||||||| ||||||||||| | |||||||| |||||||| |
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| T |
42013204 |
atggggaaagcggagagcaaatggaacgacctagtctttccgtatatgctcatttaggagcagagcaattgaagaaagatattgaagagtgtcaaaatct |
42013105 |
T |
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| Q |
452 |
tga |
454 |
Q |
| |
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||| |
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| T |
42013104 |
tga |
42013102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 465 - 561
Target Start/End: Complemental strand, 42013016 - 42012922
Alignment:
| Q |
465 |
aatgtacagcttgactcagaatcttccgacattcgattaagtcaacaggtactttcctatgctctcaatgatcttccattacgttaaattcatttta |
561 |
Q |
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|||||| ||||||||||| || ||||||| |||||||||||||||| |||| ||||||| ||||||||| |||||| ||| |||||||||||||| |
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| T |
42013016 |
aatgtagagcttgactcacaaccttccgatattcgattaagtcaactggta--ttcctattttctcaatgaccttccaatacattaaattcatttta |
42012922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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