View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20709_low_6 (Length: 489)
Name: NF20709_low_6
Description: NF20709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20709_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 12 - 471
Target Start/End: Complemental strand, 12508555 - 12508096
Alignment:
| Q |
12 |
acagacggtacaacaccatgcagtgatgatcaaggattagtatcatcaccacaaacaaatgaagcaaaaaacagtttaacttttgcttcattgaaagcaa |
111 |
Q |
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| T |
12508555 |
acagacggtacaacaccatgcagtgatgatcaaggattagtatcatcaccacaaacaaatgaagcaaaaaacagtttaacttttgcttcattgaaagcaa |
12508456 |
T |
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| Q |
112 |
aattgagcaagaatcttcaaagtattatggcaagaacaagtgatcatcataacaacaagttttcaaagagtagagtgagtgatcattttacttttgctag |
211 |
Q |
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| T |
12508455 |
aattgagcaagaatcttcaaagtattatggcaagaacaagtgatcataataacaacaagttttcaaagagtagagtgagtgatcattttacttttgctag |
12508356 |
T |
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| Q |
212 |
catattcaatcgtaggaatcataattacaatcaaatatctgctttggatatgaagaacattgagaaagttgtgcagcctagtatcattgttccctctaat |
311 |
Q |
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| T |
12508355 |
catattcaaccgtaggaatcataattacaatcaaatatctgctttggatatgaagaacatagagaaagttgtgcagcctagtatcattgttccctctaat |
12508256 |
T |
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| Q |
312 |
gatggtgacccttctagggtttctgattgtagctctgaatggtttggatttcagaatctagggttagattctgatggatctgatataggagagattaata |
411 |
Q |
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| T |
12508255 |
gatggtgacccttctagggtttctgattgtagctctgaatggtttggatttcagaatctagggttagattctgatggatctgatataggagagattaaca |
12508156 |
T |
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| Q |
412 |
ataatgctaatattaatgttggtgatcaaggttttttggaacaactcatggggtggattg |
471 |
Q |
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| T |
12508155 |
ataatgctaatattaatgttggtgatcaaggttttttggaacaactcatggggtggattg |
12508096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 322 - 471
Target Start/End: Complemental strand, 21279607 - 21279457
Alignment:
| Q |
322 |
cttctagggtttctgattgtagctctgaatggtttggatttcagaatctagggttagattctgatggatctgatataggagagattaataataatgctaa |
421 |
Q |
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||||||| |||||||||||||| |||||||||||||||| ||| ||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||| |
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| T |
21279607 |
cttctagtgtttctgattgtagttctgaatggtttggatatcataataaagggttagattatgatggatgtgatataggagagattaatattaatgctaa |
21279508 |
T |
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| Q |
422 |
tattaatgttggtgatcaaggtt-ttttggaacaactcatggggtggattg |
471 |
Q |
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| T |
21279507 |
tattaatgttggtgatcaaggtttttttggaacaactcatgggatggattg |
21279457 |
T |
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