View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20709_low_7 (Length: 466)
Name: NF20709_low_7
Description: NF20709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20709_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 14 - 466
Target Start/End: Complemental strand, 31692076 - 31691624
Alignment:
| Q |
14 |
caaattcaactgaatctgcaacagatcaacatctgaaactgtcatagctagtttcatttcaagttcctttgatatgtctatctcttccgtggcctccttt |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31692076 |
caaactcaactgaatctgcaacagatcaacatctgaaactgtcatagctagtttcatttcaagttcctttgatatgtctatctcttccgtggcctccttt |
31691977 |
T |
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| Q |
114 |
aacttttttcttgtgttttccaatttgaatgaaaactcatttgcttctctttctctttgaactctaatatcctccaactctttcaaagcctcaatcctgg |
213 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31691976 |
aacgtttttcttgtgttttccaatttgaatgaaaactcatttgcttctctttctctttgaactctaatatcctccaactctttcaaagcctcaatcctgg |
31691877 |
T |
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| Q |
214 |
ccaattcagcaagtacttgttcttcattggcttcttcaatctcctttctaagtacttcttcnnnnnnngaacaatcaatcatctttgagcttgatgcttc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31691876 |
ccaattcagcaagtacttgttcttcattggcttcttcaatctcctttctaagtacttcttctttttttgaacaatcaatcatctttgagcttgatgcttc |
31691777 |
T |
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| Q |
314 |
gatttctttctcggcccgcgatttctcttgcaaaacagaagccacgtcaagctttagcttaaacaattcctttttgagatattccaattctctcatcact |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31691776 |
gatttctttctcggcccgcgatttctcttgcaaaacagaagccacgtcaagctttagcttaaacaattcctttttgagatattccaattctctcatcact |
31691677 |
T |
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| Q |
414 |
tgtgcatactcataattctcattcctccttacaaccatagcaccatgttgacc |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31691676 |
tgtgcatactcataattctcattcctccttacaaccataacaccatgttgacc |
31691624 |
T |
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