View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20709_low_8 (Length: 455)
Name: NF20709_low_8
Description: NF20709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20709_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 4865010 - 4865344
Alignment:
| Q |
1 |
gaagaaggattgattatgttgttgttgttgaggtttggaatgctagaagttacatttatttattcttataaacattgagaggtaggaagggaaatttctg |
100 |
Q |
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| T |
4865010 |
gaagaaggattgattatgttgttgttgttgaggtttggaatgctagaagttacatttatttattcttataaacattgaaaggtaggaagggaaatttctg |
4865109 |
T |
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| Q |
101 |
tgaaattgacaactttgaaatggtcaaaagatctctttgttacaaaatccacattaaaataattatggctgcattttaaagtagtcacatt----nnnnn |
196 |
Q |
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| T |
4865110 |
tgaaattgacaactttgaaatggtcaaaagatctctttgttacaaaaaccacattaaaataattatggctgcattttaaagtagtcacattaaaaaaaaa |
4865209 |
T |
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| Q |
197 |
nnncagtggcgactacatcaccattttcatattttaaactctcactctcattaagtgaaagagctggtcatgtaaatgaaagaggggtaaaatttcccat |
296 |
Q |
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| T |
4865210 |
aaacagtggcgactacatcaccattatcatattttaaactctcactctcattaagtgaaagagctggtcctgtaaatgaaatagaggtaaaatttcccat |
4865309 |
T |
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| Q |
297 |
acatcattggagtatgtaatttttattaagaaagc |
331 |
Q |
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| T |
4865310 |
acatcattggagtatgtaatttttattaagaaagc |
4865344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 365 - 444
Target Start/End: Original strand, 4865344 - 4865431
Alignment:
| Q |
365 |
cagatgagaaagagggcacataacatcactaaagacagttag--------gcaagttatctcttaattaggaaagatttcattttcat |
444 |
Q |
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| T |
4865344 |
cagatgagaaagagggcacataacatcactaaagacagttagcttggagcgcaagttatctcttaattaggaaagatttcattttcat |
4865431 |
T |
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