View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20709_low_9 (Length: 426)
Name: NF20709_low_9
Description: NF20709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20709_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 410
Target Start/End: Complemental strand, 6454773 - 6454376
Alignment:
| Q |
13 |
gaacaatatgggaatgaagggttgtagtccatctcattcttggagctctaacacttcttttaacaccattaacgactcttgtatttcgcttgaaatcgcg |
112 |
Q |
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| T |
6454773 |
gaacaaaatgggaatgaagggttgtagtccatctcattcttggagctctaacacttcttttaacaccattaacgactcttgtatttcgcttgaaatcgcg |
6454674 |
T |
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| Q |
113 |
gccatagatgtgaggttggaagtgttggttaaagtttcttgaaacaccttgaacttgatgacgatgaaggtgatgattatgatgatgtggattcatcaaa |
212 |
Q |
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| T |
6454673 |
gccatagatgtgaggttggaagtgttggttaaagtttcttgaaaccccttgaacttgatgacgatgaaggtgatgattatgatgatgtggattcatcaaa |
6454574 |
T |
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| Q |
213 |
tctgaatttccaaagcctaatctcaatgttgggtcacgttgatgaggatagataaatggattttcatggcttaactcacttccactactagctgaatcag |
312 |
Q |
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| T |
6454573 |
tctgaatttccaaagcctaatctcaatgttgggtcacgttgatgaggatagataaatggattttcatggcttaattcacttccactactagctgaatcag |
6454474 |
T |
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| Q |
313 |
aagtagttgatattgaacatatatttgttattcctttgggttcagaatcagaaatattagaaggaagacttatgtttaaagataggtctggttctaac |
410 |
Q |
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| T |
6454473 |
aagtagttgatattgaacatatatttgttattcctttgggttcagaatcagaaatattagaaggaagacttatgtttaaagataggtctggttctaac |
6454376 |
T |
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