View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2070_high_4 (Length: 368)

Name: NF2070_high_4
Description: NF2070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2070_high_4
NF2070_high_4
[»] chr1 (21 HSPs)
chr1 (1-352)||(15825554-15825900)
chr1 (37-168)||(10824585-10824716)
chr1 (37-168)||(22683141-22683272)
chr1 (37-247)||(19056150-19056360)
chr1 (54-168)||(18844476-18844590)
chr1 (80-247)||(22683278-22683445)
chr1 (39-167)||(37189565-37189693)
chr1 (50-247)||(10824381-10824579)
chr1 (37-162)||(37189368-37189492)
chr1 (37-168)||(19056367-19056498)
chr1 (37-145)||(18844687-18844796)
chr1 (186-247)||(18844596-18844658)
chr1 (103-159)||(22683290-22683346)
chr1 (183-235)||(10824597-10824650)
chr1 (180-235)||(15825746-15825802)
chr1 (184-235)||(22683207-22683259)
chr1 (184-235)||(22683370-22683422)
chr1 (78-122)||(25035394-25035438)
chr1 (78-122)||(25040607-25040651)
chr1 (184-235)||(37189433-37189485)
chr1 (184-235)||(37189577-37189629)
[»] chr2 (24 HSPs)
chr2 (37-168)||(2916378-2916509)
chr2 (37-247)||(16973201-16973411)
chr2 (37-168)||(16973064-16973195)
chr2 (37-145)||(44594248-44594357)
chr2 (39-168)||(44594454-44594583)
chr2 (37-167)||(11533661-11533792)
chr2 (59-247)||(2916514-2916702)
chr2 (43-168)||(40987862-40987987)
chr2 (37-247)||(38982557-38982767)
chr2 (37-167)||(40987657-40987787)
chr2 (59-168)||(38982773-38982882)
chr2 (37-167)||(13559519-13559648)
chr2 (62-131)||(24126176-24126245)
chr2 (37-104)||(24125670-24125737)
chr2 (62-131)||(24125906-24125975)
chr2 (90-167)||(13559357-13559434)
chr2 (103-145)||(24125815-24125857)
chr2 (178-243)||(24125799-24125865)
chr2 (184-247)||(44594384-44594448)
chr2 (103-153)||(16973213-16973263)
chr2 (78-119)||(2581839-2581880)
chr2 (78-119)||(37867792-37867833)
chr2 (184-235)||(2916444-2916496)
chr2 (290-350)||(43793636-43793696)
[»] chr3 (14 HSPs)
chr3 (37-247)||(51663387-51663597)
chr3 (40-247)||(46003251-46003458)
chr3 (37-167)||(40244625-40244756)
chr3 (54-167)||(20537943-20538056)
chr3 (37-168)||(51663250-51663381)
chr3 (38-168)||(20538150-20538280)
chr3 (37-168)||(40364041-40364172)
chr3 (54-167)||(46003465-46003578)
chr3 (37-99)||(40244873-40244935)
chr3 (40-129)||(40364213-40364301)
chr3 (103-155)||(20538076-20538128)
chr3 (190-247)||(20538064-20538122)
chr3 (103-153)||(46003396-46003446)
chr3 (180-231)||(20537996-20538048)
[»] chr7 (15 HSPs)
chr7 (37-244)||(41985910-41986117)
chr7 (38-247)||(6474281-6474491)
chr7 (37-168)||(28715858-28715989)
chr7 (37-145)||(30862218-30862326)
chr7 (40-167)||(28715645-28715772)
chr7 (37-168)||(47373462-47373595)
chr7 (54-247)||(47373600-47373792)
chr7 (37-168)||(6474497-6474627)
chr7 (54-168)||(30862436-30862550)
chr7 (37-106)||(41986186-41986255)
chr7 (59-163)||(38408121-38408225)
chr7 (59-119)||(10257425-10257485)
chr7 (78-122)||(21171331-21171375)
chr7 (78-122)||(21171522-21171566)
chr7 (184-235)||(28715708-28715760)
[»] chr4 (12 HSPs)
chr4 (37-205)||(55173432-55173600)
chr4 (40-167)||(37996068-37996195)
chr4 (37-243)||(39161428-39161634)
chr4 (37-153)||(39161288-39161404)
chr4 (37-243)||(47096939-47097144)
chr4 (37-158)||(50509354-50509475)
chr4 (37-167)||(47096800-47096928)
chr4 (37-153)||(55173334-55173451)
chr4 (37-85)||(2623450-2623498)
chr4 (184-235)||(39161354-39161406)
chr4 (78-122)||(23752052-23752096)
chr4 (59-119)||(50531795-50531855)
[»] scaffold0781 (1 HSPs)
scaffold0781 (37-163)||(5256-5382)
[»] chr6 (12 HSPs)
chr6 (37-163)||(2216799-2216925)
chr6 (37-163)||(24798843-24798969)
chr6 (42-167)||(11643754-11643879)
chr6 (37-247)||(11643886-11644095)
chr6 (37-247)||(24690355-24690569)
chr6 (37-247)||(18494734-18494943)
chr6 (37-247)||(24798625-24798831)
chr6 (37-167)||(18494949-18495079)
chr6 (39-123)||(24690607-24690691)
chr6 (102-153)||(24798771-24798822)
chr6 (183-235)||(24798850-24798903)
chr6 (59-163)||(9955590-9955694)
[»] chr8 (16 HSPs)
chr8 (59-232)||(2554002-2554175)
chr8 (37-247)||(29714679-29714889)
chr8 (37-166)||(13884706-13884835)
chr8 (37-168)||(13884489-13884620)
chr8 (37-247)||(42126520-42126731)
chr8 (37-247)||(11867819-11868028)
chr8 (37-167)||(42126382-42126512)
chr8 (37-168)||(29714542-29714673)
chr8 (87-247)||(14996596-14996757)
chr8 (37-129)||(43416263-43416355)
chr8 (76-168)||(15862540-15862632)
chr8 (54-122)||(41178492-41178560)
chr8 (103-145)||(42126532-42126574)
chr8 (108-153)||(2554004-2554049)
chr8 (78-119)||(29739682-29739723)
chr8 (109-145)||(14996614-14996650)
[»] scaffold0060 (1 HSPs)
scaffold0060 (37-168)||(22921-23052)
[»] chr5 (6 HSPs)
chr5 (37-168)||(21249362-21249493)
chr5 (121-244)||(21249502-21249625)
chr5 (103-155)||(21249511-21249563)
chr5 (78-119)||(5384385-5384426)
chr5 (53-118)||(12862958-12863023)
chr5 (59-119)||(22819588-22819648)
[»] scaffold0034 (2 HSPs)
scaffold0034 (89-155)||(108047-108113)
scaffold0034 (114-163)||(108137-108186)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 15825900 - 15825554
Alignment:
Q  1 aatatagaaaacggaaaaatatataagnnnnnnnnnggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataa 100  Q
    |||||||||||||||||||||||||||          ||||||||||| ||||||||||||||||||||||||| |||||||||| |||  |||||||||    
T  15825900 aatatagaaaacggaaaaatatataagaaaaaaaa--gcttattcaatcacccggtctcttaacttaattgattgtctcaatttggtcc--taactataa 15825805  T
Q  101 tttgtatcaatttggtcccctatgttttgctttgttattagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaacta 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||         ||||| ||||| ||||||| |||    
T  15825804 tttgtaccaatttggtcccctatgttttgctttgttattagttttagtcctttttattagtttctctcaaaaaaac-gttaacagaaatgactaaa-cta 15825707  T
Q  201 gtaacaggtaaaacatcggggaccaaattggtacataagttaacgttcatgtgagagattttagggtctaagtgaaaaacc-ttgactgaaggtgcaaat 299  Q
    ||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  15825706 gtaacaggtaaaacataagggaccaaattgatacataagttaacgttcatgtgagagattttagggtctaagtgaaaaacctttgactaaaggtgcaaat 15825607  T
Q  300 taaaaatatcaaggtgtgcaaattacataaacataggattattggtgcaaggt 352  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15825606 taaacatatcaaggtgtgcaaattacataaacataggattattggtgcaaggt 15825554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 37 - 168
Target Start/End: Complemental strand, 10824716 - 10824585
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| | |||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10824716 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgtt 10824617  T
Q  137 attagtttttgtcctttttattagtttctctc 168  Q
    | ||||||| ||||||| || |||||||||||    
T  10824616 actagttttagtcctttctagtagtttctctc 10824585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 22683141 - 22683272
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| ||||| ||  ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22683141 ggcttattcaatcacccgctcctttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 22683240  T
Q  137 attagtttttgtcctttttattagtttctctc 168  Q
    | ||||||| ||||||| | ||||||||||||    
T  22683241 actagttttagtcctttctgttagtttctctc 22683272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 37 - 247
Target Start/End: Original strand, 19056150 - 19056360
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| ||| | || |||||||||||||||| | | |||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  19056150 ggcttattcaatcacctgatcccttaacttaattgattgtattaatttggtcccctaattataatttgtatcaatttggtcccctatattttgctttgtt 19056249  T
Q  137 attagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaac-aggtaaaacatcggggaccaaattggtaca 235  Q
    | ||||||| ||| ||| | ||||||||||||          |||| ||||| |||| ||||||||||| | | ||||||  ||||||||||||||||||    
T  19056250 actagttttagtcttttctgttagtttctctcaaaaaaac-attaacagaaaagacttaaactagtaacgaagcaaaacacaggggaccaaattggtaca 19056348  T
Q  236 taagttaacgtt 247  Q
    ||||||||||||    
T  19056349 taagttaacgtt 19056360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 18844476 - 18844590
Alignment:
Q  54 ggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttattagtttttgtccttt 153  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| |||    
T  18844476 ggtcccttaacttaattgattatctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcattt 18844575  T
Q  154 ttattagtttctctc 168  Q
     |  |||||||||||    
T  18844576 ctggtagtttctctc 18844590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 80 - 247
Target Start/End: Complemental strand, 22683445 - 22683278
Alignment:
Q  80 aatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttattagtttttgtcctttttattagtttctctcnnnnnnnntgt 179  Q
    |||||| |||||||||| | ||||||| ||||||||||| ||||||||||||  |||| ||||||| ||||||| | ||||||||||||         ||    
T  22683445 aatttggtcccctaacttttatttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctcttagtttctctcaaaaaaac-gt 22683347  T
Q  180 taatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtacataagttaacgtt 247  Q
    |||||||||||||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||    
T  22683346 taatagaaaggactaaaactagtaacggagcaaaacataggggaccaaattggtacataagttaacgtt 22683278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 39 - 167
Target Start/End: Complemental strand, 37189693 - 37189565
Alignment:
Q  39 cttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttat 138  Q
    |||||||||| ||| |||| |||||||||||||||| |||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| ||||     
T  37189693 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccctatctataatttgtaccaatttggtcccctatgttttgcttcgttac 37189594  T
Q  139 tagtttttgtcctttttattagtttctct 167  Q
    ||||||| ||| ||| |  ||||||||||    
T  37189593 tagttttagtcatttctggtagtttctct 37189565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 50 - 247
Target Start/End: Original strand, 10824381 - 10824579
Alignment:
Q  50 acccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttattagtttttgtc 149  Q
    ||||||||  |||||||||||||||||  ||||||| |||||||| ||||||||||||||||||||||| ||||||||||||  |||| ||||||| |||    
T  10824381 acccggtcctttaacttaattgattattgcaatttggtcccctaattataatttgtatcaatttggtcctctatgttttgctccgttactagttttagtc 10824480  T
Q  150 ctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtacataagttaacgtt 247  Q
    |||| | |||||||||            || || |||||||||||||||||| ||| | | ||||||| ||||| ||||||||||||||||||||||||    
T  10824481 ctttctgttagtttctaaaaaaaaaaacgtgaacagaaaggactaaaactaggaacggagcaaaacataggggatcaaattggtacataagttaacgtt 10824579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 37 - 162
Target Start/End: Original strand, 37189368 - 37189492
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| |||||||| |||||||||||||||| |||||||||| || | ||||||||||||||| ||||||||||| ||||||||||||  |||    
T  37189368 ggcttattcaatcacccggtc-cttaacttaattgattgtctcaatttggtctcataactataatttgtaccaatttggtcctctatgttttgctccgtt 37189466  T
Q  137 attagtttttgtcctttttattagtt 162  Q
    | ||||||| ||||||| | ||||||    
T  37189467 actagttttagtcctttctgttagtt 37189492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 37 - 168
Target Start/End: Complemental strand, 19056498 - 19056367
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| | |||||| |||||||||||||||| | | |||||| ||||||||||||||| |||| |||||||||  ||||||||||||||||||    
T  19056498 ggcttattcaatcatccggtcccttaacttaattgattgttttaatttggtcccctaactataatctgtaccaatttggtatcctatgttttgctttgtt 19056399  T
Q  137 attagtttttgtcctttttattagtttctctc 168  Q
    | ||||||| ||| ||| | | ||||||||||    
T  19056398 actagttttagtcatttctgtcagtttctctc 19056367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 18844796 - 18844687
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatc-ccctaactataatttgtatcaatttggtcccctatgttttgctttgt 135  Q
    |||||||||||| ||||| || |||||||||||||||| |||||||||| |  |||||||||||||||||||||||||||||| ||||||||||||  ||    
T  18844796 ggcttattcaatcacccgatcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctccgt 18844697  T
Q  136 tattagtttt 145  Q
    || |||||||    
T  18844696 tactagtttt 18844687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 18844658 - 18844596
Alignment:
Q  186 aaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtacataagttaacgtt 247  Q
    |||||||||||||||| ||| | ||||||||| |||||| ||||||||||||||||| |||||    
T  18844658 aaaggactaaaactaggaacggagtaaaacataggggactaaattggtacataagtttacgtt 18844596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 22683290 - 22683346
Alignment:
Q  103 tgtatcaatttggtcccctatgttttgctttgttattagtttttgtcctttttatta 159  Q
    |||| ||||||||||||||||||||||||  |||| ||||||| ||||||| |||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttctatta 22683346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 10824597 - 10824650
Alignment:
Q  183 tagaaaggactaaaactagtaac-aggtaaaacatcggggaccaaattggtaca 235  Q
    ||||||||||||||||||||||| | | ||||||| ||||||||||||| ||||    
T  10824597 tagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgataca 10824650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 15825746 - 15825802
Alignment:
Q  180 taatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtaca 235  Q
    ||||| ||||||||||||||| |||||  | ||||||| ||||||||||||||||||    
T  15825746 taataaaaaggactaaaactaataacaaagcaaaacataggggaccaaattggtaca 15825802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 22683259 - 22683207
Alignment:
Q  184 agaaaggactaaaactagtaac-aggtaaaacatcggggaccaaattggtaca 235  Q
    |||||||||||||||||||||| | | ||||||| ||||||||||||| ||||    
T  22683259 agaaaggactaaaactagtaacaaagcaaaacataggggaccaaattgataca 22683207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 22683370 - 22683422
Alignment:
Q  184 agaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtaca 235  Q
    |||||||||||||||||||||| | | ||||||| | ||||||||||||||||    
T  22683370 agaaaggactaaaactagtaacggagcaaaacatagaggaccaaattggtaca 22683422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 25035394 - 25035438
Alignment:
Q  78 tcaatttgatcccctaactataatttgtatcaatttggtccccta 122  Q
    |||||||| |||||||||| ||| |||| ||||||||||||||||    
T  25035394 tcaatttggtcccctaactttaaattgtctcaatttggtccccta 25035438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 25040607 - 25040651
Alignment:
Q  78 tcaatttgatcccctaactataatttgtatcaatttggtccccta 122  Q
    |||||||| |||||||||| ||| |||| ||||||||||||||||    
T  25040607 tcaatttggtcccctaactttaaattgtctcaatttggtccccta 25040651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 37189485 - 37189433
Alignment:
Q  184 agaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtaca 235  Q
    |||||||||||||||||||||| | | ||||||| | ||||||||||||||||    
T  37189485 agaaaggactaaaactagtaacggagcaaaacatagaggaccaaattggtaca 37189433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 37189577 - 37189629
Alignment:
Q  184 agaaaggactaaaactagtaac-aggtaaaacatcggggaccaaattggtaca 235  Q
    ||||| |||||||||||||||| | | ||||||| ||||||||||||||||||    
T  37189577 agaaatgactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 37189629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 2916378 - 2916509
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2916378 ggcttattcaatcacccgatctcttaacttaattgattgtctcaatttgatcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 2916477  T
Q  137 attagtttttgtcctttttattagtttctctc 168  Q
    | |||||||  |||||| | ||||||||||||    
T  2916478 actagttttaatcctttctgttagtttctctc 2916509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 16973411 - 16973201
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| ||  |||| |||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||   ||    
T  16973411 ggcttattcaatcacatggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtgtcaatttggtcctctatgttttgctccatt 16973312  T
Q  137 attagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtaca 235  Q
    | ||||||| ||| ||| | | ||||||||||         ||||| |||||||||||||||||||||| | | ||||||| ||||||||||||||||||    
T  16973311 actagttttagtcatttctgtcagtttctctcaaaaaaac-gttaacagaaaggactaaaactagtaacggagcaaaacataggggaccaaattggtaca 16973213  T
Q  236 taagttaacgtt 247  Q
    ||||||||||||    
T  16973212 taagttaacgtt 16973201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 16973064 - 16973195
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| |||||||| |||||||||||||||| ||| |||||| ||||||||||||| |||||| ||||||||||||||||||||||||| |||    
T  16973064 ggcttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactatagtttgtaccaatttggtcccctatgttttgcttcgtt 16973163  T
Q  137 attagtttttgtcctttttattagtttctctc 168  Q
    | |||||||  | |||| | ||||||||||||    
T  16973164 actagttttaattctttctgttagtttctctc 16973195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 44594248 - 44594357
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatc-ccctaactataatttgtatcaatttggtcccctatgttttgctttgt 135  Q
    |||||||||||| |||||||| |||||||||||||||| |||||||||| |  |||||||||||||||||||||||||||||| |||||||||||| |||    
T  44594248 ggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctctgt 44594347  T
Q  136 tattagtttt 145  Q
    || |||||||    
T  44594348 tactagtttt 44594357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 44594583 - 44594454
Alignment:
Q  39 cttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttat 138  Q
    |||||||||| ||||||||  |||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||  |||||||||||| ||||     
T  44594583 cttattcaatcacccggtcctttaatttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtccattatgttttgcttcgttac 44594484  T
Q  139 tagtttttgtcctttttattagtttctctc 168  Q
    ||||||| ||| ||| |  |||||||||||    
T  44594483 tagttttagtcatttctggtagtttctctc 44594454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 11533792 - 11533661
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggt-cccctatgttttgctttgt 135  Q
    |||||||||||| | | ||||||||||||||| ||||| |||||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||| |    
T  11533792 ggcttattcaatcatcaggtctcttaacttaagtgattgtctcaatttggtcccccaactataatttgtaccaatttggtccccctatgttttgctttat 11533693  T
Q  136 tattagtttttgtcctttttattagtttctct 167  Q
    || ||||||| ||| ||| ||||||| |||||    
T  11533692 tactagttttagtcatttctattagtgtctct 11533661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 59 - 247
Target Start/End: Complemental strand, 2916702 - 2916514
Alignment:
Q  59 cttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttattagtttttgtcctttttatt 158  Q
    |||||||||||||||| |||||||||| |||||||||||| ||||||| ||| ||| ||| |||| ||||||| ||||| ||||||| ||||||| | ||    
T  2916702 cttaacttaattgattgtctcaatttggtcccctaactattatttgtaccaacttgatcctctatattttgctctgttactagttttggtcctttctgtt 2916603  T
Q  159 agtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtacataagttaacgtt 247  Q
    ||||||||||         ||||| ||||| ||||||||||| |||| | | ||||  | ||||||||||||||||||||||||||||||    
T  2916602 agtttctctcaaaaaaac-gttaacagaaaagactaaaactaataacggagcaaaatgtaggggaccaaattggtacataagttaacgtt 2916514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 40987987 - 40987862
Alignment:
Q  43 ttcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttattagt 142  Q
    |||||| ||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| | ||  || |    
T  40987987 ttcaatcacccggtctcttaacttaattaattgtctcaatttgatcctctaactataatttgtattaatttggtcccctatattttgctctattgctaat 40987888  T
Q  143 ttttgtcctttttattagtttctctc 168  Q
    ||| ||| ||| | ||||||||||||    
T  40987887 tttagtcatttctgttagtttctctc 40987862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 37 - 247
Target Start/End: Original strand, 38982557 - 38982767
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||| ||||| ||||| ||  ||||||||||||||| ||||||||||   |||||||||||||||||| ||||||||||   |||||||||||| |||    
T  38982557 ggcttaatcaatcacccgatcctttaacttaattgattgtctcaatttggctccctaactataatttgtaccaatttggtcatttatgttttgcttcgtt 38982656  T
Q  137 attagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtaca 235  Q
      ||||||| ||||||| |||||||| |||||         || || ||||||||||||||| || ||| | | |||||||  |||||||||||||||||    
T  38982657 gctagttttagtcctttctattagttactctcaaaaaaac-gtgaacagaaaggactaaaaccaggaacggagcaaaacataagggaccaaattggtaca 38982755  T
Q  236 taagttaacgtt 247  Q
    ||||||||||||    
T  38982756 taagttaacgtt 38982767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 37 - 167
Target Start/End: Original strand, 40987657 - 40987787
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||| ||| | |||||| |||||||||||||||| |||||||||| | |||||||||||||||||| |||||| ||| | ||||||||| ||||||    
T  40987657 ggcttatttaatcatccggtcccttaacttaattgattgtctcaatttggttccctaactataatttgtaccaatttagtctcatatgttttgatttgtt 40987756  T
Q  137 attagtttttgtcctttttattagtttctct 167  Q
    | ||||||| ||| ||| | |||||||||||    
T  40987757 actagttttagtcttttatgttagtttctct 40987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 168
Target Start/End: Complemental strand, 38982882 - 38982773
Alignment:
Q  59 cttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttattagtttttgtcctttttatt 158  Q
    |||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| || ||||||||||||  ||| ||||||| ||| ||| |  |    
T  38982882 cttaacttaattgattgtctcaatttggtcccttaactataatttgtatcaatttggttccttatgttttgcttcattactagttttagtcatttctggt 38982783  T
Q  159 agtttctctc 168  Q
    ||||||||||    
T  38982782 agtttctctc 38982773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 13559648 - 13559519
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| | |||||| |||||||||||||||| | |||||||| | |||||||||||||||||||||| |||||||| | || |||||| ||||    
T  13559648 ggcttattcaatcatccggtcccttaacttaattgattgtttcaatttggttccctaactataatttgtatcaa-ttggtcccttgtgctttgctctgtt 13559550  T
Q  137 attagtttttgtcctttttattagtttctct 167  Q
    | ||| ||| ||| ||| | |||||||||||    
T  13559549 actagatttagtcatttatgttagtttctct 13559519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 24126245 - 24126176
Alignment:
Q  62 aacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgct 131  Q
    ||||||||||||| |||||||||| || ||||||||||||||||| |||||||||||| |||||||||||    
T  24126245 aacttaattgattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct 24126176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 24125670 - 24125737
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttg 104  Q
    |||||||||| | | |||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  24125670 ggcttattcactcaaccggtcccttaacttaattgattgtctcaatttgatcccctaactataatttg 24125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 24125975 - 24125906
Alignment:
Q  62 aacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgct 131  Q
    ||||||||| ||| |||||||||| || ||||||||||||||||| |||||||||||| |||||||||||    
T  24125975 aacttaattaattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct 24125906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 13559357 - 13559434
Alignment:
Q  90 cctaactataatttgtatcaatttggtcccctatgttttgctttgttattagtttttgtcctttttattagtttctct 167  Q
    |||||||||||||||| ||||||||||| | ||| ||||| ||||||||||||||| ||| ||| | |||||||||||    
T  13559357 cctaactataatttgtttcaatttggtctcatatattttgttttgttattagttttagtcatttctgttagtttctct 13559434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 24125857 - 24125815
Alignment:
Q  103 tgtatcaatttggtcccctatgttttgctttgttattagtttt 145  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  24125857 tgtatcaatttggtcccctatgttttgctctgttattagtttt 24125815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 24125799 - 24125865
Alignment:
Q  178 gttaatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtacataagttaa 243  Q
    ||||| ||||| ||||||||||| |||||| | ||||||| ||||||||||||| ||||||||||||    
T  24125799 gttaacagaaatgactaaaactaataacagagcaaaacataggggaccaaattgatacataagttaa 24125865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 44594384 - 44594448
Alignment:
Q  184 agaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtacataagttaacgtt 247  Q
    |||||||||||||||||| ||| | | ||||||| |||||| ||||||||||||||||| |||||    
T  44594384 agaaaggactaaaactaggaacggagcaaaacataggggactaaattggtacataagtttacgtt 44594448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 16973213 - 16973263
Alignment:
Q  103 tgtatcaatttggtcccctatgttttgctttgttattagtttttgtccttt 153  Q
    |||| ||||||||||||||||||||||||  |||| ||||||| |||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagtccttt 16973263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 2581839 - 2581880
Alignment:
Q  78 tcaatttgatcccctaactataatttgtatcaatttggtccc 119  Q
    |||||||||||||||||||||||  ||| |||||||||||||    
T  2581839 tcaatttgatcccctaactataaagtgtctcaatttggtccc 2581880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 37867792 - 37867833
Alignment:
Q  78 tcaatttgatcccctaactataatttgtatcaatttggtccc 119  Q
    |||||||||||||||||||||||  ||| |||||||||||||    
T  37867792 tcaatttgatcccctaactataaagtgtctcaatttggtccc 37867833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 2916496 - 2916444
Alignment:
Q  184 agaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtaca 235  Q
    |||||||| ||||||||||||||  | ||||||| ||||||||||||||||||    
T  2916496 agaaaggattaaaactagtaacaaagcaaaacataggggaccaaattggtaca 2916444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 350
Target Start/End: Original strand, 43793636 - 43793696
Alignment:
Q  290 aggtgcaaattaaaaatatcaaggtgtgcaaattacataaacataggattattggtgcaag 350  Q
    |||||||||  |||||| | | ||||||||||| |||||||  ||||||||||||||||||    
T  43793636 aggtgcaaagcaaaaatttgagggtgtgcaaataacataaaagtaggattattggtgcaag 43793696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 51663597 - 51663387
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| | |||||| |||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||    
T  51663597 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtagcaatttggtcctctatgttttgctatgtt 51663498  T
Q  137 attagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtaca 235  Q
    | ||||||| ||| ||| | ||||||||||||         || || ||||| |||||||||||| ||||| | ||||||| |||||||||||| |||||    
T  51663497 actagttttagtcatttctgttagtttctctcaaaaaaac-gtgaacagaaatgactaaaactaggaacagagcaaaacataggggaccaaattagtaca 51663399  T
Q  236 taagttaacgtt 247  Q
    ||||||||||||    
T  51663398 taagttaacgtt 51663387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 40 - 247
Target Start/End: Original strand, 46003251 - 46003458
Alignment:
Q  40 ttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttatt 139  Q
    ||||||||| ||||||||  ||||||||||||||| | | |||||| |||||||||||||||||||||||||||||||| ||||||| || | |||||      
T  46003251 ttattcaatcacccggtcctttaacttaattgattgttttaatttggtcccctaactataatttgtatcaatttggtcctctatgttctgttctgttaca 46003350  T
Q  140 agtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaac-aggtaaaacatcggggaccaaattggtacataa 238  Q
    |||||| ||||||||| ||||||||||||         ||||| |||||||||||||||||||||| | | ||||||| | |||||||||||||||||||    
T  46003351 agttttagtcctttttgttagtttctctcaaaaaaac-gttaacagaaaggactaaaactagtaacgaagcaaaacatagaggaccaaattggtacataa 46003449  T
Q  239 gttaacgtt 247  Q
    |||||||||    
T  46003450 gttaacgtt 46003458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 37 - 167
Target Start/End: Original strand, 40244625 - 40244756
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttgg-tcccctatgttttgctttgt 135  Q
    |||||||||||| | ||| || |||||||||||||||| |||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||||    
T  40244625 ggcttattcaatcatccgatcccttaacttaattgattgtctcaatttggtcccttaactataatttgtaccaatttggttcccctatgttttgctttgt 40244724  T
Q  136 tattagtttttgtcctttttattagtttctct 167  Q
    || ||||||| ||| ||| | |||||||||||    
T  40244725 tactagttttagtcatttctgttagtttctct 40244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 20537943 - 20538056
Alignment:
Q  54 ggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttattagtttttgtccttt 153  Q
    |||| |||||||||||||||  | ||||||||||||||||||||||||||||  |||||||||||||||||||||||||  ||| ||||||| |||||||    
T  20537943 ggtcccttaacttaattgatattatcaatttgatcccctaactataatttgttccaatttggtcccctatgttttgcttcattactagttttagtccttt 20538042  T
Q  154 ttattagtttctct 167  Q
     |||||||||||||    
T  20538043 ctattagtttctct 20538056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 51663250 - 51663381
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||| ||| ||||||||||||||||||||||||| | | ||| || ||| ||||||||||||||||||||||| |||||||||||||||||| |||    
T  51663250 ggcttatttaatcacccggtctcttaacttaattgattgttttaatatggtccactaactataatttgtatcaatttagtcccctatgttttgcttcgtt 51663349  T
Q  137 attagtttttgtcctttttattagtttctctc 168  Q
    | ||||||| ||| ||| |  |||||||||||    
T  51663350 actagttttagtcatttctggtagtttctctc 51663381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 38 - 168
Target Start/End: Complemental strand, 20538280 - 20538150
Alignment:
Q  38 gcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtta 137  Q
    ||||||||||| ||||||||  |||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||   ||||||||||||  ||||    
T  20538280 gcttattcaatcacccggtcctttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttagttatctatgttttgctccgtta 20538181  T
Q  138 ttagtttttgtcctttttattagtttctctc 168  Q
     ||||||| ||| ||| | ||||||||||||    
T  20538180 ctagttttagtcatttctgttagtttctctc 20538150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 40364041 - 40364172
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    ||||||||| || ||||  || |||||||||||||||||||| |||||| |||| ||| ||||||||||||||||||| |||||| | |||||||  |||    
T  40364041 ggcttattcgatcacccaatcccttaacttaattgattatcttaatttggtcccataattataatttgtatcaatttgatcccctgtattttgctccgtt 40364140  T
Q  137 attagtttttgtcctttttattagtttctctc 168  Q
    ||||||||| ||| ||||| ||||||||||||    
T  40364141 attagttttagtcatttttgttagtttctctc 40364172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 167
Target Start/End: Complemental strand, 46003578 - 46003465
Alignment:
Q  54 ggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttattagtttttgtccttt 153  Q
    |||| |||||||||||||||| |||||||||| ||||||||||| |||||||| ||||||| |||||| ||||||||||  ||| ||||||| |||||||    
T  46003578 ggtcccttaacttaattgattgtctcaatttggtcccctaactaaaatttgtaccaatttgatcccctttgttttgcttcattactagttttagtccttt 46003479  T
Q  154 ttattagtttctct 167  Q
     |  ||||||||||    
T  46003478 ctggtagtttctct 46003465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 40244935 - 40244873
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactata 99  Q
    |||||||||||| |||| ||| |||||||||||||||| |||||||||| |||||||||||||    
T  40244935 ggcttattcaatcaccccgtcccttaacttaattgattgtctcaatttggtcccctaactata 40244873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 40364301 - 40364213
Alignment:
Q  40 ttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttg 129  Q
    ||||||||| ||  |||| |||||||||||||||| | |||||||| || ||||||||||||||||| ||||||| | ||||||||||||    
T  40364301 ttattcaatcacttggtcccttaacttaattgattgtttcaatttggtctcctaactataatttgtaccaatttgat-ccctatgttttg 40364213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 20538076 - 20538128
Alignment:
Q  103 tgtatcaatttggtcccctatgttttgctttgttattagtttttgtccttttt 155  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||| |||||    
T  20538076 tgtaccaatttggtcccctatgttttgctttgttattagttttagtcattttt 20538128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 20538122 - 20538064
Alignment:
Q  190 gactaaaactagtaacag-gtaaaacatcggggaccaaattggtacataagttaacgtt 247  Q
    ||||||||||| |||||  | ||||||| ||||||||||||||||||||| ||||||||    
T  20538122 gactaaaactaataacaaagcaaaacataggggaccaaattggtacataaattaacgtt 20538064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 46003446 - 46003396
Alignment:
Q  103 tgtatcaatttggtcccctatgttttgctttgttattagtttttgtccttt 153  Q
    |||| ||||||||||| ||||||||||||| |||| ||||||| |||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagtccttt 46003396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 20538048 - 20537996
Alignment:
Q  180 taatagaaaggactaaaactagtaa-caggtaaaacatcggggaccaaattgg 231  Q
    |||||||||||||||||||||||||  | | ||||||| ||||||||||||||    
T  20538048 taatagaaaggactaaaactagtaatgaagcaaaacataggggaccaaattgg 20537996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 37 - 244
Target Start/End: Original strand, 41985910 - 41986117
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  41985910 ggcttattcaatcacccagtcccttaacttaattgattgtctcaatttgatcccctaactataatttgtttcaatttggtcccatatgttttgctttgtt 41986009  T
Q  137 attagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtaca 235  Q
    | || |||| |||||||   ||||||||||||         ||||  | |||||||||||| ||| ||| | | ||||||| ||||||||||||||||||    
T  41986010 actaattttagtcctttccgttagtttctctcaaaaaaac-gttagcataaaggactaaaattagcaacggagcaaaacataggggaccaaattggtaca 41986108  T
Q  236 taagttaac 244  Q
    |||||||||    
T  41986109 taagttaac 41986117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 38 - 247
Target Start/End: Original strand, 6474281 - 6474491
Alignment:
Q  38 gcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatg-ttttgctttgtt 136  Q
    ||||||||||||||| | || |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  6474281 gcttattcaattaccggatcccttaacttaattgattgtctcaatttgatcccctaactataatttatatcaatttggtcccctatgtttttgctttgtt 6474380  T
Q  137 attagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtaca 235  Q
    | ||||||| ||| ||| | ||||||||||||         ||||| | ||| |||||||||||  || || | |||||||  |||||||||||||||||    
T  6474381 actagttttagtcttttctgttagtttctctcaaaaaaac-gttaacataaaagactaaaactaacaatagagcaaaacataagggaccaaattggtaca 6474479  T
Q  236 taagttaacgtt 247  Q
    ||||||||||||    
T  6474480 taagttaacgtt 6474491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 37 - 168
Target Start/End: Complemental strand, 28715989 - 28715858
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    ||||||||||||||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||| ||||||||||| ||| ||||||||  ||     
T  28715989 ggcttattcaattacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcctctaagttttgctcagtc 28715890  T
Q  137 attagtttttgtcctttttattagtttctctc 168  Q
    | ||||||| ||| ||| | ||||||||||||    
T  28715889 actagttttagtcatttctgttagtttctctc 28715858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 30862218 - 30862326
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| |  ||||| |||||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  30862218 ggcttattcaatcattcggtcccttaacttaattgattgtctgaatttggtcccctaactataatttgtaccaatttggtcccctatattttgctttgtt 30862317  T
Q  137 attagtttt 145  Q
    | |||||||    
T  30862318 actagtttt 30862326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 28715645 - 28715772
Alignment:
Q  40 ttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttatt 139  Q
    ||||||||| |||||||| |||||||||||| ||| | | |||||| |  ||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  28715645 ttattcaatcacccggtcccttaacttaattaattgttttaatttggtttcctaactataatttgtatcaatttggtcccctatgttttgcttcgttact 28715744  T
Q  140 agtttttgtcctttttattagtttctct 167  Q
    |||||| ||||||| |  ||||||||||    
T  28715745 agttttagtcctttctggtagtttctct 28715772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 47373462 - 47373595
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactata--atttgtatcaatttggtcccctatgttttgctttg 134  Q
    |||||||||||| || || ||||||||||||||||||| |||||||||||||| |||| ||||  ||||||| |||||||||||||||||||||||| ||    
T  47373462 ggcttattcaatcactcgatctcttaacttaattgattgtctcaatttgatcctctaattatataatttgtaccaatttggtcccctatgttttgctctg 47373561  T
Q  135 ttattagtttttgtcctttttattagtttctctc 168  Q
    ||  ||||||| ||| ||| | ||||||||||||    
T  47373562 ttgctagttttagtcatttatgttagtttctctc 47373595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 47373792 - 47373600
Alignment:
Q  54 ggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttattagtttttgtccttt 153  Q
    |||| |||||||||||||||| |||||||||| |||||||| ||||||||||| |||||| ||| | ||||||||| | ||||| |||||||  ||||||    
T  47373792 ggtcccttaacttaattgattgtctcaatttggtcccctaattataatttgtaccaatttagtctcatatgttttgatgtgttactagttttaatccttt 47373693  T
Q  154 ttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtacataagttaacgtt 247  Q
     | |||||||||||          ||||| ||||| ||||||||||| |||| | | ||||||| |||||| |||||||||||||||||||||||    
T  47373692 atgttagtttctct--taaaaaacgttaacagaaacgactaaaactaataacggagcaaaacataggggactaaattggtacataagttaacgtt 47373600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 37 - 168
Target Start/End: Complemental strand, 6474627 - 6474497
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| ||||| || |||||||||||||||| ||| |||||| || ||||||||||| ||||| | ||||| |||| |||| |||||| ||||    
T  6474627 ggcttattcaatcacccgatcccttaacttaattgattgtcttaatttggtctcctaactataa-ttgtaccgatttgctcccttatgctttgctctgtt 6474529  T
Q  137 attagtttttgtcctttttattagtttctctc 168  Q
    | ||||||| ||||||| | ||||||||||||    
T  6474528 actagttttagtcctttatgttagtttctctc 6474497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 30862550 - 30862436
Alignment:
Q  54 ggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttattagtttttgtccttt 153  Q
    |||| ||||| | |||||||| | |||||||  | ||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||| ||| |||    
T  30862550 ggtcccttaattgaattgattgtttcaattttgttccctaactataatttgtatcaatttggtcccttatgttttgctctgttactaattttagtctttt 30862451  T
Q  154 ttattagtttctctc 168  Q
     | ||||||||||||    
T  30862450 ctgttagtttctctc 30862436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 41986255 - 41986186
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgta 106  Q
    |||||||||||| |||||||  ||||||||||||| || |||||||||||||||||||||||||||||||    
T  41986255 ggcttattcaatcacccggttccttaacttaattgtttgtctcaatttgatcccctaactataatttgta 41986186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 163
Target Start/End: Complemental strand, 38408225 - 38408121
Alignment:
Q  59 cttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttattagtttttgtcctttttatt 158  Q
    ||||||||||||| || | |||| ||| |||||||| ||||||||||| ||| || |||| ||| |||||||| |||||  |||||  ||||||| | ||    
T  38408225 cttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttctgtt 38408126  T
Q  159 agttt 163  Q
    |||||    
T  38408125 agttt 38408121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 10257485 - 10257425
Alignment:
Q  59 cttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtccc 119  Q
    ||||||||| || ||| ||||||||||||||| ||||||| |  ||| |||||||||||||    
T  10257485 cttaacttattttattttctcaatttgatcccttaactattaagtgtctcaatttggtccc 10257425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 21171331 - 21171375
Alignment:
Q  78 tcaatttgatcccctaactataatttgtatcaatttggtccccta 122  Q
    |||||||| |||||||||| ||| |||| ||||||||||||||||    
T  21171331 tcaatttggtcccctaactttaaattgtctcaatttggtccccta 21171375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 21171566 - 21171522
Alignment:
Q  78 tcaatttgatcccctaactataatttgtatcaatttggtccccta 122  Q
    |||||||| |||||||||| ||| |||| ||||||||||||||||    
T  21171566 tcaatttggtcccctaactttaaattgtctcaatttggtccccta 21171522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 28715760 - 28715708
Alignment:
Q  184 agaaaggactaaaactagtaac-aggtaaaacatcggggaccaaattggtaca 235  Q
    |||||||||||||||||||||| | | ||||||| ||||||||||||| ||||    
T  28715760 agaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgataca 28715708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 8e-43; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 55173600 - 55173432
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| |||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||    
T  55173600 ggcttattcaatcacccggtcccttaacttaattgattgtctcaatttgatctcctaactataatttgtaccaatttggtcccctatgctttgctttgtt 55173501  T
Q  137 attagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaac 205  Q
    | | ||||| ||| |||||  |||||||||||         ||||| ||||||||||||||||||||||    
T  55173500 acttgttttagtcttttttgctagtttctctcaaaaaaaacgttaacagaaaggactaaaactagtaac 55173432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 37996068 - 37996195
Alignment:
Q  40 ttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttatt 139  Q
    ||||||||| ||| | || ||||| | || ||||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37996068 ttattcaatcacctgatcccttaattaaaatgattgtttcaatttggtcccttaactataatttgtatcaatttggtcccctatgttttgctttgttatt 37996167  T
Q  140 agtttttgtcctttttattagtttctct 167  Q
    |||||| ||| |||||||||||||||||    
T  37996168 agttttagtcttttttattagtttctct 37996195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 37 - 243
Target Start/End: Complemental strand, 39161634 - 39161428
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||  | |||||  |||||||||||||||| | | |||||| |||||||||||||||||||| |||||| |||| ||||||||||||  |||    
T  39161634 ggcttattcaaccatccggttccttaacttaattgattgttttaatttggtcccctaactataatttgtaccaatttagtcctctatgttttgctccgtt 39161535  T
Q  137 attagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacaggt-aaaacatcggggaccaaattggtaca 235  Q
    ||||||||| ||||||| | ||||||||||||         || ||||||||||||||||||||| ||| | | |||||||  |||||||||||||||||    
T  39161534 attagttttagtcctttctgttagtttctctcgaaaaaac-gtgaatagaaaggactaaaactaggaacggatcaaaacatatgggaccaaattggtaca 39161436  T
Q  236 taagttaa 243  Q
    ||||||||    
T  39161435 taagttaa 39161428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 39161288 - 39161404
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| ||||| ||  ||||||||||||| | ||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  39161288 ggcttattcaatcacccgatcctttaacttaattgaatgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 39161387  T
Q  137 attagtttttgtccttt 153  Q
    | ||||||| |||||||    
T  39161388 actagttttagtccttt 39161404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 243
Target Start/End: Complemental strand, 47097144 - 47096939
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| | ||| ||||||||||||||||||| |||||||||  ||| |||||||||||||||| ||||||| |   |||||||||||   |||    
T  47097144 ggcttattcaatcatccgatctcttaacttaattgattgtctcaatttagtcctctaactataatttgtaccaatttgat---ctatgttttgccccgtt 47097048  T
Q  137 attagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacat-cggggaccaaattggtac 234  Q
    | ||||||| ||| ||||| ||||||||||||         ||||| |||||||||||||||||||||  | | |||||||  |||||||||||||||||    
T  47097047 actagttttagtcatttttgttagtttctctccaaaaaaacgttaacagaaaggactaaaactagtaatggagcaaaacatagggggaccaaattggtac 47096948  T
Q  235 ataagttaa 243  Q
    |||||||||    
T  47096947 ataagttaa 47096939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 50509475 - 50509354
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| | | | || |||||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50509475 ggcttattcaatcatctgatcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 50509376  T
Q  137 attagtttttgtcctttttatt 158  Q
    | || |||| ||| ||| ||||    
T  50509375 actaattttagtcttttctatt 50509354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 167
Target Start/End: Original strand, 47096800 - 47096928
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| ||| | || ||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| | |||||||||||||||| |||    
T  47096800 ggcttattcaatcacctgatcccttaacttaattgattatctcaatttggtcccctaac-ataatttgtaccaattt-gccccctatgttttgcttcgtt 47096897  T
Q  137 attagtttttgtcctttttattagtttctct 167  Q
    | | ||||| ||||||| | || ||||||||    
T  47096898 acttgttttagtcctttatgtttgtttctct 47096928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 55173334 - 55173451
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggt-cccctatgttttgctttgt 135  Q
    ||||||||| || | |||||  |||||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||| ||||||| |||||||  ||    
T  55173334 ggcttattcgatcatccggttccttaacttaattgattgtcttaatttggtcccctaactataatttgtattaatttggtccccctatattttgctccgt 55173433  T
Q  136 tattagtttttgtccttt 153  Q
    || ||||||| |||||||    
T  55173434 tactagttttagtccttt 55173451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 2623498 - 2623450
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttg 85  Q
    |||||||||||| || ||||| |||||||||||||||| ||||||||||    
T  2623498 ggcttattcaatcactcggtcccttaacttaattgattgtctcaatttg 2623450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 39161406 - 39161354
Alignment:
Q  184 agaaaggactaaaactagtaac-aggtaaaacatcggggaccaaattggtaca 235  Q
    |||||||||||||||||||||| | | ||||||| ||||||||||||||||||    
T  39161406 agaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 39161354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 23752052 - 23752096
Alignment:
Q  78 tcaatttgatcccctaactataatttgtatcaatttggtccccta 122  Q
    |||||||| |||||||||| ||| |||| ||||||||||||||||    
T  23752052 tcaatttggtcccctaactttaaattgtctcaatttggtccccta 23752096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 50531855 - 50531795
Alignment:
Q  59 cttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtccc 119  Q
    ||||||||| || ||| ||||||||||||||| ||||||| |  ||| |||||||||||||    
T  50531855 cttaacttattttattttctcaatttgatcccttaactattaagtgtctcaatttggtccc 50531795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 163
Target Start/End: Complemental strand, 5382 - 5256
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| | |||||| |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5382 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 5283  T
Q  137 attagtttttgtcctttttattagttt 163  Q
    ||||||||| ||| ||| | |||||||    
T  5282 attagttttagtcatttatgttagttt 5256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 163
Target Start/End: Complemental strand, 2216925 - 2216799
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| | |||||| |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2216925 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 2216826  T
Q  137 attagtttttgtcctttttattagttt 163  Q
    ||||||||| ||| ||| | |||||||    
T  2216825 attagttttagtcatttatgttagttt 2216799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 37 - 163
Target Start/End: Complemental strand, 24798969 - 24798843
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| ||||| || ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24798969 ggcttattcaatcacccgatcccttaaattaattgattgtcttaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgcttcgtt 24798870  T
Q  137 attagtttttgtcctttttattagttt 163  Q
    | ||||||| ||||||| || ||||||    
T  24798869 actagttttagtcctttctagtagttt 24798843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 11643754 - 11643879
Alignment:
Q  42 attcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttattag 141  Q
    ||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||    
T  11643754 attcaatcacccggtcccttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttggttccctatgttttgttttgttactag 11643853  T
Q  142 tttttgtcctttttattagtttctct 167  Q
    |||| ||||| | | |||||||||||    
T  11643854 ttttagtcctctctgttagtttctct 11643879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 11644095 - 11643886
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgat-cccctaactataatttgtatcaatttggtcccctatgttttgctttgt 135  Q
    |||||||||||| |||||||| |||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  11644095 ggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccctaactataatttgtatcaatttggt-ccctatgtttt-ctttgt 11643998  T
Q  136 tattagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtac 234  Q
    || ||||||| ||| ||| | ||||  |||||          ||||| ||||| |||||||||||||||| | | ||||||| |||||||||||||||||    
T  11643997 tactagttttagtcttttctgttag-atctctaaaaaaaaacgttaacagaaatgactaaaactagtaacggagcaaaacataggggaccaaattggtac 11643899  T
Q  235 ataagttaacgtt 247  Q
    |||||||||||||    
T  11643898 ataagttaacgtt 11643886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 37 - 247
Target Start/End: Original strand, 24690355 - 24690569
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgct----t 132  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||||         
T  24690355 ggcttattcaatcacccggtctcttaacttaattgattgtctcaatttggtccccttactataatttgtaccaatttggtcctctatgttttgctctagg 24690454  T
Q  133 tgttattagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattgg 231  Q
    ||||| ||||||| | | ||| | ||| ||||||||         ||||| ||||||||||||||||| ||| || | ||||||| || |||||||||||    
T  24690455 tgttactagttttagccatttctgttattttctctcaaaaaaac-gttaacagaaaggactaaaactattaatagagcaaaacataggagaccaaattgg 24690553  T
Q  232 tacataagttaacgtt 247  Q
    ||||||||||||||||    
T  24690554 tacataagttaacgtt 24690569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 37 - 247
Target Start/End: Original strand, 18494734 - 18494943
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| ||  |||| |||||||| ||||||| |||||||||| |||| || |||||||||||| || ||||||||||||||||| ||||||||    
T  18494734 ggcttattcaatcacatggtcccttaactttattgattgtctcaatttggtccc-tagctataatttgtaccattttggtcccctatgttt-gctttgtt 18494831  T
Q  137 attagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtaca 235  Q
    | ||||||| ||||||||| |||||||||||          ||||| |||||| |||||||||||||| || |  ||| || ||||||||||||| ||||    
T  18494832 actagttttagtcctttttgttagtttctctaaaaaaaatcgttaacagaaagaactaaaactagtaatagagcgaaatataggggaccaaattgctaca 18494931  T
Q  236 taagttaacgtt 247  Q
    ||||||||||||    
T  18494932 taagttaacgtt 18494943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 37 - 247
Target Start/End: Original strand, 24798625 - 24798831
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    ||||||||||||||  ||||| ||||||||||||| || | |||||||| |||||| ||||||||||||| ||||||||||| ||||||||||||| |||    
T  24798625 ggcttattcaattattcggtcccttaacttaattggttgtttcaatttggtcccctgactataatttgtaccaatttggtcctctatgttttgcttcgtt 24798724  T
Q  137 attagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtaca 235  Q
    | ||||||| ||| ||| | ||||||||||||        ||| ||| ||||||||||||||||| ||| | | ||||||| ||||||||||||| |||     
T  24798725 actagttttagtcatttctgttagtttctctc---aaaaatgtgaatcgaaaggactaaaactaggaacggagcaaaacataggggaccaaattgatac- 24798820  T
Q  236 taagttaacgtt 247  Q
     |||||||||||    
T  24798821 -aagttaacgtt 24798831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 18495079 - 18494949
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| | |  ||| |||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||| |  |||    
T  18495079 ggcttattcaatcatctagtcccttaacttaattgattatattaatttgatcccttaactataatttgtatcaatttggtcccctatattttgatccgtt 18494980  T
Q  137 attagtttttgtcctttttattagtttctct 167  Q
    ||||||||| || |||| | |||||||||||    
T  18494979 attagttttagttctttctgttagtttctct 18494949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 24690691 - 24690607
Alignment:
Q  39 cttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctat 123  Q
    |||||||||| ||||| || |||||||||||||||| | | |||||| | |||||||||||||||||| ||||||||||||||||    
T  24690691 cttattcaatcacccgatcccttaacttaattgattgttttaatttggttccctaactataatttgtaccaatttggtcccctat 24690607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 24798822 - 24798771
Alignment:
Q  102 ttgtatcaatttggtcccctatgttttgctttgttattagtttttgtccttt 153  Q
    ||||||||||||||||||||||||||||||  |||  ||||||| |||||||    
T  24798822 ttgtatcaatttggtcccctatgttttgctccgttcctagttttagtccttt 24798771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 24798850 - 24798903
Alignment:
Q  183 tagaaaggactaaaactagtaac-aggtaaaacatcggggaccaaattggtaca 235  Q
    ||||||||||||||||||||||| | | ||||||| ||||||||||||| ||||    
T  24798850 tagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgataca 24798903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 163
Target Start/End: Complemental strand, 9955694 - 9955590
Alignment:
Q  59 cttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttattagtttttgtcctttttatt 158  Q
    ||||||||||||| || | |||| ||| |||||||| ||||||||||| ||| ||  ||| ||| |||||||| |||||  |||||  ||||||| | ||    
T  9955694 cttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcatcctctaagttttgctctgttaccagtttcggtcctttctgtt 9955595  T
Q  159 agttt 163  Q
    |||||    
T  9955594 agttt 9955590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 59 - 232
Target Start/End: Complemental strand, 2554175 - 2554002
Alignment:
Q  59 cttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttattagtttttgtcctttttatt 158  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||| | ||||| || |||| | ||    
T  2554175 cttaacttaattgattgtctcaatttgatcccctaactataatttgttccaatttggtctcctatgttttgctttgttacttgttttagttctttctgtt 2554076  T
Q  159 agtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaac-aggtaaaacatcggggaccaaattggt 232  Q
    ||||||||||         ||||| |||||||||||||||||||||| | ||||||||| |||||||||||||||    
T  2554075 agtttctctcaaaaaaac-gttaacagaaaggactaaaactagtaacgaagtaaaacataggggaccaaattggt 2554002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 29714889 - 29714679
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    ||||||||  || ||| |||| |||||||||||||||| | | |||||| |||| ||||||||||||||||||||||||||| |||||||||||||  ||    
T  29714889 ggcttatttgatcacctggtcccttaacttaattgattgttttaatttggtcccttaactataatttgtatcaatttggtcctctatgttttgcttcatt 29714790  T
Q  137 attagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtaca 235  Q
    | ||||||| ||| ||| | | ||||||||||        |||||| |||||||||||||||||||||| | ||||||||| || |||||||||||||||    
T  29714789 actagttttagtcatttatgtcagtttctctc-aaaaaaatgttaacagaaaggactaaaactagtaacggagtaaaacataggagaccaaattggtaca 29714691  T
Q  236 taagttaacgtt 247  Q
    ||||||||||||    
T  29714690 taagttaacgtt 29714679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 13884835 - 13884706
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| |||||||| |||||||||||||||| |||||||||  |||||||||||||||||||| ||||||||||| ||||||||||||| |||    
T  13884835 ggcttattcaatcacccggtcccttaacttaattgattgtctcaatttagtcccctaactataatttgtaccaatttggtcctctatgttttgcttcgtt 13884736  T
Q  137 attagtttttgtcctttttattagtttctc 166  Q
    | | ||||| ||||||||| ||||||||||    
T  13884735 actggttttagtcctttttgttagtttctc 13884706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 13884489 - 13884620
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| |||||||| |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |||    
T  13884489 ggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggccccctatgttttgcttcgtt 13884588  T
Q  137 attagtttttgtcctttttattagtttctctc 168  Q
    | ||||||| ||| ||| |  |||||||||||    
T  13884589 actagttttagtcttttctggtagtttctctc 13884620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 42126731 - 42126520
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| |||     
T  42126731 ggcttattcaatcacccggtcccttaacttaattgattatctcaatttgatcccctaactataatttgtaccaatttggtcctctaagttttgctctgtc 42126632  T
Q  137 attagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtaca 235  Q
    | || |||| ||| ||| | |||||||||||           | || ||||| |||||||||||  ||| | | ||||||| ||||||||||||| ||||    
T  42126631 actaattttagtcatttctgttagtttctctaaaaaaaaacatgaacagaaaagactaaaactaagaacggagcaaaacataggggaccaaattgataca 42126532  T
Q  236 taagttaacgtt 247  Q
    ||||||||||||    
T  42126531 taagttaacgtt 42126520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 11868028 - 11867819
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| ||| |||| |||||||||||||||| |||||||||| | || ||||||||||||||||||||||||||| |||||||||| |||||     
T  11868028 ggcttattcaatcacctggtc-cttaacttaattgattgtctcaatttggttccttaactataatttgtatcaatttggtcctctatgttttgatttgtc 11867930  T
Q  137 attagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacatcggggaccaaattggtaca 235  Q
    | ||||||| ||||||| | ||||||||||||         || ||||||||||||||||| ||| ||||| | |||||||   |||| ||||||||| |    
T  11867929 actagttttagtcctttatgttagtttctctcaaaaaaac-gtgaatagaaaggactaaaattaggaacagagcaaaacataaaggactaaattggtaaa 11867831  T
Q  236 taagttaacgtt 247  Q
    ||||||||||||    
T  11867830 taagttaacgtt 11867819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 37 - 167
Target Start/End: Original strand, 42126382 - 42126512
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| |||||||| |||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| | |    
T  42126382 ggcttattcaatcacccggtcccttaacttaattaattgtctcaatttgattctctaactataatttgtatcaatttggccccctatgttttgcttcgct 42126481  T
Q  137 attagtttttgtcctttttattagtttctct 167  Q
    | ||||||| ||||||| |  ||||||||||    
T  42126482 actagttttagtcctttctggtagtttctct 42126512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 29714542 - 29714673
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| |||||||| |||||||||||||||| |||||||||| ||||| ||||||| |||||| |||||||||||||||| ||||||||||||    
T  29714542 ggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccaaactatagtttgtaccaatttggtcccctatattttgctttgtt 29714641  T
Q  137 attagtttttgtcctttttattagtttctctc 168  Q
    | ||| |||  || ||| | ||||||||||||    
T  29714642 actagctttaatcatttctgttagtttctctc 29714673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 87 - 247
Target Start/End: Complemental strand, 14996757 - 14996596
Alignment:
Q  87 tcccctaactataatttgtatcaatttggtcccc-tatgttttgctttgttattagtttttgtcctttttattagtttctctcnnnnnnnntgttaatag 185  Q
    |||||||| ||||||||||| ||||||| ||||| ||||||||||||||||| ||||||| ||||||| | ||||||||| ||         ||||| ||    
T  14996757 tcccctaattataatttgtaccaatttgatccccctatgttttgctttgttactagttttagtcctttctgttagtttctatcaaaaacac-gttaacag 14996659  T
Q  186 aaaggactaaaactagtaac-aggtaaaacatcggggaccaaattggtacataagttaacgtt 247  Q
    ||| |||||||||||||||| | | ||||||| |||||||||||| |||||||||||||||||    
T  14996658 aaaagactaaaactagtaacgaagcaaaacataggggaccaaattagtacataagttaacgtt 14996596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 43416263 - 43416355
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttg 129  Q
    |||||||||||| |  |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||  || |||||||||||    
T  43416263 ggcttattcaatcattcggtctcttaacttaattgattgtcttaatttaatcccctaactataatttgtatcaatttaatctcctatgttttg 43416355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 15862632 - 15862540
Alignment:
Q  76 tctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgttattagtttttgtcctttttattagtttctctc 168  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||  |||| | |||||  | ||||  |||||||||||||    
T  15862632 tctcaatttgatcccctaactataatttgtattaatttggtcctctatgatttgctccgttactggttttaatactttccattagtttctctc 15862540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 41178492 - 41178560
Alignment:
Q  54 ggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtccccta 122  Q
    |||| ||||||||| ||  |||| |||||||||||| |||||| ||| |||| ||||||||||||||||    
T  41178492 ggtcccttaacttatttttttatttcaatttgatcctctaactttaaattgtctcaatttggtccccta 41178560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 42126532 - 42126574
Alignment:
Q  103 tgtatcaatttggtcccctatgttttgctttgttattagtttt 145  Q
    |||||||||||||||||||||||||||||  ||| ||||||||    
T  42126532 tgtatcaatttggtcccctatgttttgctccgttcttagtttt 42126574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 2554004 - 2554049
Alignment:
Q  108 caatttggtcccctatgttttgctttgttattagtttttgtccttt 153  Q
    ||||||||||||||||||||| ||| |||| ||||||| |||||||    
T  2554004 caatttggtcccctatgttttacttcgttactagttttagtccttt 2554049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 29739723 - 29739682
Alignment:
Q  78 tcaatttgatcccctaactataatttgtatcaatttggtccc 119  Q
    |||||||||||||||||||||||  ||| |||||||||||||    
T  29739723 tcaatttgatcccctaactataaagtgtctcaatttggtccc 29739682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 14996614 - 14996650
Alignment:
Q  109 aatttggtcccctatgttttgctttgttattagtttt 145  Q
    |||||||||||||||||||||||| |||| |||||||    
T  14996614 aatttggtcccctatgttttgcttcgttactagtttt 14996650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 37 - 168
Target Start/End: Complemental strand, 23052 - 22921
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| |||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||| ||||||| ||| ||||||||||||  |||    
T  23052 ggcttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcctctatgttttgctccgtt 22953  T
Q  137 attagtttttgtcctttttattagtttctctc 168  Q
    | ||||||| ||||||| | ||||||||||||    
T  22952 actagttttagtcctttctgttagtttctctc 22921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 21249362 - 21249493
Alignment:
Q  37 ggcttattcaattacccggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctttgtt 136  Q
    |||||||||||| ||| |||| |||| | ||||||||| |||||||||| |||||||| ||||| ||||| |||||| |||||||||||||||||| |||    
T  21249362 ggcttattcaatcacctggtcccttaccgtaattgattgtctcaatttggtcccctaattataaattgtaccaatttagtcccctatgttttgcttcgtt 21249461  T
Q  137 attagtttttgtcctttttattagtttctctc 168  Q
    | |||||||  |||||| | ||||||||||||    
T  21249462 actagttttaatcctttctgttagtttctctc 21249493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 244
Target Start/End: Complemental strand, 21249625 - 21249502
Alignment:
Q  121 tatgttttgctttgttattagtttttgtcctttttattagtttctctcnnnnnnnntgttaatagaaaggactaaaactagtaacag-gtaaaacatcgg 219  Q
    |||||||||||  |||||||||||| ||||||| | |||||||||||          ||||| | |||||||||||||||||||||| | |||||||  |    
T  21249625 tatgttttgctccgttattagttttagtcctttctgttagtttctctaaaaaaaag-gttaacaaaaaggactaaaactagtaacagagcaaaacataag 21249527  T
Q  220 ggaccaaattggtacataagttaac 244  Q
    |||||||||||||||||||||||||    
T  21249526 ggaccaaattggtacataagttaac 21249502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 21249511 - 21249563
Alignment:
Q  103 tgtatcaatttggtcccctatgttttgctttgttattagtttttgtccttttt 155  Q
    |||| |||||||||||| ||||||||||| ||||| ||||||| |||||||||    
T  21249511 tgtaccaatttggtcccttatgttttgctctgttactagttttagtccttttt 21249563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 5384426 - 5384385
Alignment:
Q  78 tcaatttgatcccctaactataatttgtatcaatttggtccc 119  Q
    |||||||||||||||||||||||  ||| |||||||||||||    
T  5384426 tcaatttgatcccctaactataaagtgtctcaatttggtccc 5384385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 12863023 - 12862958
Alignment:
Q  53 cggtctcttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtcc 118  Q
    ||||||||||||||| || ||| ||||| ||||||||| ||||||| |  ||| ||||||||||||    
T  12863023 cggtctcttaacttattttattttctcagtttgatcccttaactattaagtgtctcaatttggtcc 12862958  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 22819648 - 22819588
Alignment:
Q  59 cttaacttaattgattatctcaatttgatcccctaactataatttgtatcaatttggtccc 119  Q
    ||||||||| || ||| ||||||||||||||| ||||||| |  ||| |||||||||||||    
T  22819648 cttaacttattttattttctcaatttgatcccttaactattaagtgtctcaatttggtccc 22819588  T

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Target: scaffold0034 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 108047 - 108113
Alignment:
Q  89 ccctaactataatttgtatcaatttggtcccctatgttttgctttgttattagtttttgtccttttt 155  Q
    ||||||| |||||||||||||||||||||| || |||||||||   ||| ||||||| |||||||||    
T  108047 ccctaaccataatttgtatcaatttggtcctctgtgttttgctccattactagttttagtccttttt 108113  T

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Target: scaffold0034; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 108186 - 108137
Alignment:
Q  114 ggtcccctatgttttgctttgttattagtttttgtcctttttattagttt 163  Q
    ||||| |||||||||||||||||||||||||| ||| ||| |||||||||    
T  108186 ggtcctctatgttttgctttgttattagttttagtcttttatattagttt 108137  T

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