View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2070_low_1 (Length: 597)

Name: NF2070_low_1
Description: NF2070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2070_low_1
NF2070_low_1
[»] scaffold0083 (2 HSPs)
scaffold0083 (6-303)||(54024-54321)
scaffold0083 (297-328)||(53961-53992)
[»] chr3 (19 HSPs)
chr3 (6-303)||(9980816-9981113)
chr3 (6-303)||(10360144-10360451)
chr3 (6-203)||(10035440-10035637)
chr3 (400-581)||(10591864-10592045)
chr3 (6-93)||(10130351-10130438)
chr3 (6-93)||(10584308-10584395)
chr3 (113-190)||(10584429-10584506)
chr3 (113-203)||(10130472-10130562)
chr3 (331-402)||(10591733-10591805)
chr3 (113-213)||(10264427-10264530)
chr3 (113-178)||(10372397-10372462)
chr3 (250-303)||(10584533-10584586)
chr3 (6-67)||(10264132-10264193)
chr3 (297-338)||(10584618-10584659)
chr3 (118-223)||(10430267-10430367)
chr3 (21-66)||(10430545-10430591)
chr3 (297-328)||(9981145-9981176)
chr3 (297-328)||(10360081-10360112)
chr3 (252-289)||(10035653-10035690)
[»] chr2 (1 HSPs)
chr2 (113-207)||(26910551-26910640)


Alignment Details
Target: scaffold0083 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 303
Target Start/End: Complemental strand, 54321 - 54024
Alignment:
Q  6 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatcagctcatttggt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54321 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatcagctcatttggt 54222  T
Q  106 caattgaagctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaa 205  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54221 caattgaagctaatcaaaggaaaatgcttatttcatcttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaa 54122  T
Q  206 aactgcttctttgattttttatgaggaattgaagactcagcggcttccattgattgccacaagatttaatttacttagctgctaatagtgagtttgta 303  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54121 aactgcttctttgattttttatgaggaattgaagactcagcggcatccattgattgccacaagatttaatttacttagctgctaatagtcagtttgta 54024  T

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Target: scaffold0083; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 328
Target Start/End: Complemental strand, 53992 - 53961
Alignment:
Q  297 gtttgtaatattcttaatttgtaacatttttt 328  Q
    ||||||||||||||||||||||||||||||||    
T  53992 gtttgtaatattcttaatttgtaacatttttt 53961  T

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Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 303
Target Start/End: Original strand, 9980816 - 9981113
Alignment:
Q  6 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatcagctcatttggt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9980816 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatcagctcatttggt 9980915  T
Q  106 caattgaagctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaa 205  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9980916 caattgaagctaatcaaaggaaaatgcttatttcatcttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaa 9981015  T
Q  206 aactgcttctttgattttttatgaggaattgaagactcagcggcttccattgattgccacaagatttaatttacttagctgctaatagtgagtttgta 303  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9981016 aactgcttctttgattttttatgaggaattgaagactcagcggcatccattgattgccacaagatttaatttacttagctgctaatagtcagtttgta 9981113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 303
Target Start/End: Complemental strand, 10360451 - 10360144
Alignment:
Q  6 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaa--tcagctc----a 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||  ||| |      |    
T  10360451 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaacctgtaactgctgcattaatctcaacaataaaa 10360352  T
Q  100 tttggtcaat--------tgaagctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcactt 191  Q
     |||  ||||        || ||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  10360351 attgaacaatcatgtctttggagctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggccta----tgtggatgataatctgctcactt 10360256  T
Q  192 gatgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcggcttccattgattgccacaagatttaatttacttagctgctaat 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10360255 gatgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcagcttccattgattgccacaagatttaatttacttagctgctaat 10360156  T
Q  292 agtgagtttgta 303  Q
    ||| ||||||||    
T  10360155 agtcagtttgta 10360144  T

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Target: chr3; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 10035440 - 10035637
Alignment:
Q  6 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatcagctcatttggt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035440 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatcagctcatttggt 10035539  T
Q  106 caattgaagctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaag 203  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||  ||||||||||    
T  10035540 caattgaagctaatcaaaggaaaatgcttatttcatcttttcaggagatcaaaggcctagctatgtggatgataatcagctcatttcgtgaattgaag 10035637  T

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Target: chr3; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 400 - 581
Target Start/End: Original strand, 10591864 - 10592045
Alignment:
Q  400 aacccgattttgctatcctataatctcctgtattatactagtgtaaaccttattactaacatatccactaaatcatgcttaaatcataaggagtttatat 499  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10591864 aacccgattttgctatcctataatctcctgtattatactattgtaaaccttattactaacatatccactaaatcatgcttaaatcataaggagtttatat 10591963  T
Q  500 tttaaaagtcaaaagattgggttcaaagtcagacagaagaaaatgtactatgttgttacaattttgaagatgtaaattattg 581  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  10591964 tttaaaagtcaaaagattgagttcaaagtcagacagaagaaaatgtactatgttggtacaattttgaagacgtaaattattg 10592045  T

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Target: chr3; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 10130351 - 10130438
Alignment:
Q  6 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatc 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10130351 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatc 10130438  T

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Target: chr3; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 10584308 - 10584395
Alignment:
Q  6 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatc 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584308 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatc 10584395  T

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Target: chr3; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 10584429 - 10584506
Alignment:
Q  113 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcact 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584429 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcact 10584506  T

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Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 10130472 - 10130562
Alignment:
Q  113 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaag 203  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  ||||| ||| ||||||||||    
T  10130472 agctaatcaaaggaaaatgcttatttcatcttttcaggagatcaaaggcccagctatgtggatgataattagctcatttggtgaattgaag 10130562  T

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Target: chr3; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 331 - 402
Target Start/End: Original strand, 10591733 - 10591805
Alignment:
Q  331 caatttataacatattctttagcatatattcttaatttgtacaatgcagta-ggtttatatgcaatttataac 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10591733 caatttataacatattctttagcatatattcttaatttgtacaatgcagtagggtttatatgcaatttataac 10591805  T

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Target: chr3; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 10264427 - 10264530
Alignment:
Q  113 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctag---ctatgtggatgataatctgctcacttgatgaattgaagaaaact 209  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||  | |    ||||||||||||||||| |||||||||||||||||||||||| |    
T  10264427 agctaatcaaaggaaaatgcttatttcatcttttcagaagatcaaagttcaaaggcctatgtggatgataatcagctcacttgatgaattgaagaaaaat 10264526  T
Q  210 gctt 213  Q
    ||||    
T  10264527 gctt 10264530  T

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Target: chr3; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 10372462 - 10372397
Alignment:
Q  113 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgat 178  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  10372462 agctaatcaaaggaaaatgtttatttcatcttttcaggagatcaaaggcctagctatgtggatgat 10372397  T

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Target: chr3; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 10584533 - 10584586
Alignment:
Q  250 ttccattgattgccacaagatttaatttacttagctgctaatagtgagtttgta 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584533 ttccattgattgccacaagatttaatttacttagctgctaatagtgagtttgta 10584586  T

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Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 10264132 - 10264193
Alignment:
Q  6 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttgg 67  Q
    ||||||||| ||  ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  10264132 acataagtcttgttggaaaactggtttcttattaatttttgggcttataaaaccatctttgg 10264193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 10584618 - 10584659
Alignment:
Q  297 gtttgtaatattcttaatttgtaacattttttagcaatttat 338  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10584618 gtttgtaatattcttaatttgtaacattttttagcaatttat 10584659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 10430367 - 10430267
Alignment:
Q  118 atcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaaaactgcttcttt 217  Q
    ||||||||||||||||||||| | ||||||||||||||||  |||   ||| | |||||| |||| || |||| |||||||||||||||| ||||| |||    
T  10430367 atcaaaggaaaatgcttatttgatcttttcaggagatcaa--gcc---ctaagcggatgaaaatcagcccactcgatgaattgaagaaaaatgcttattt 10430273  T
Q  218 gatttt 223  Q
    ||||||    
T  10430272 gatttt 10430267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 10430591 - 10430545
Alignment:
Q  21 gaaaactggtttcttatttat-ttttgggcttataaaactatctttg 66  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  10430591 gaaaactggtttcttattaatattttgggcttataaaactatctttg 10430545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 328
Target Start/End: Original strand, 9981145 - 9981176
Alignment:
Q  297 gtttgtaatattcttaatttgtaacatttttt 328  Q
    ||||||||||||||||||||||||||||||||    
T  9981145 gtttgtaatattcttaatttgtaacatttttt 9981176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 328
Target Start/End: Complemental strand, 10360112 - 10360081
Alignment:
Q  297 gtttgtaatattcttaatttgtaacatttttt 328  Q
    ||||||||||||||||||||||||||||||||    
T  10360112 gtttgtaatattcttaatttgtaacatttttt 10360081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 10035653 - 10035690
Alignment:
Q  252 ccattgattgccacaagatttaatttacttagctgcta 289  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  10035653 ccattcattgccacaagatttaatttactcagctgcta 10035690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 26910551 - 26910640
Alignment:
Q  113 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaaaa 207  Q
    ||||||| |||| ||||||||||||| | ||||||||||||||||||      ||| || ||||| |||| ||||||||||||||| ||||||||    
T  26910551 agctaattaaagaaaaatgcttatttgatcttttcaggagatcaaag-----cctaagttgatgaaaatcagctcacttgatgaatcgaagaaaa 26910640  T

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