View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2070_low_10 (Length: 222)
Name: NF2070_low_10
Description: NF2070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2070_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 21488258 - 21488455
Alignment:
| Q |
10 |
atgaacaaaagagatagaataaggaaacatggttttgttgttataatatttgttgtatttgtggggccacaactagtttcttgtcaaaaaagcaatgatg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21488258 |
atgaacaaaagagatagaataaggaaacatggttttgttgttataatatttgttgtatttgtggggccacaactagtttcttgtcaaaaaagcaatgatg |
21488357 |
T |
|
| Q |
110 |
atggtgatgttgggagttcaggtgctggtattgagatatttgcccaggaaatgtataatagcatgtcaggttttacatctgttttcaagggtgcaatc |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21488358 |
atggtgatgttggtggttcaggtgctggtattgagatatttgcccaggaaatgtataatagcatgtcaggttttacatctgttttcaagggtgcaatc |
21488455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University