View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2070_low_3 (Length: 382)
Name: NF2070_low_3
Description: NF2070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2070_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 29838114 - 29837737
Alignment:
| Q |
1 |
catacatcaaacaccggggtctagcacaagtggttggtgcgcatggtgtgtaaatggtttaaacatcgaggtactaacgaacaaacacaagatataccgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29838114 |
catacatcaaacaccggggtctagcacaagtggttggtgcgcatggtgtgtaaatggtttaaacatcgaggtactaacgaacaaacacaagatttaccgt |
29838015 |
T |
|
| Q |
101 |
ctttaactaatcctagaagaaccggcaagtaatcttcaagagcctgaagaagattagcgagcgttgaaccacctgaagatgaaatcaaacgacacagatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
29838014 |
ctttaactaatcctagaagaaccggcaagtaatcttcaagagcctgaagaagattagcgagcgttgaaccacctgaagatgaaatcacacgacaccgatg |
29837915 |
T |
|
| Q |
201 |
catcaataaattacaacacaacttatatatcatagaataattttacctttgctaaaaaactaaccatgttgagtaacactttttctttttgttcttgtaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29837914 |
catcaataaattacaacacaacttatatatcatagaataattttacctttgctaaaaaactaaccatgttgagtaacactttttctttttgttcttgtaa |
29837815 |
T |
|
| Q |
301 |
ttgtaggtccttcttggctagccattacaactatacgcgttctaagagcagatagccgttcaattatattcttcgaca |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
29837814 |
ttgtaggtccttcttggctagccattacaactatacgcgttctaagagcagatatccgttcgattatattcttcgaca |
29837737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 259 - 354
Target Start/End: Original strand, 34628690 - 34628785
Alignment:
| Q |
259 |
actaaccatgttgagtaacactttttctttttgttcttgtaattgtaggtccttcttggctagccattacaactatacgcgttctaagagcagata |
354 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||||| |||||||||||||||| |
|
|
| T |
34628690 |
actaaccatgttgagttgcactttttctttttgttcttgtaattgtaggaccttcttgaccagccattacaacgatacgagttctaagagcagata |
34628785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 34628535 - 34628626
Alignment:
| Q |
95 |
taccgtctttaactaatcctagaagaaccggcaagtaatcttcaagagcctgaagaagattagcgagcgttgaaccacctgaagatgaaatc |
186 |
Q |
| |
|
|||| ||||| |||||||| | ||| ||||| ||||| |||||||||||||| ||||||| ||| || |||||||| ||||| ||||||||| |
|
|
| T |
34628535 |
taccatctttgactaatcccaaaagtaccggtaagtagtcttcaagagcctgtagaagatcagccagtgttgaacctcctgaggatgaaatc |
34628626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University