View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2070_low_7 (Length: 253)

Name: NF2070_low_7
Description: NF2070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2070_low_7
NF2070_low_7
[»] chr5 (17 HSPs)
chr5 (7-253)||(37429269-37429524)
chr5 (145-249)||(37640547-37640651)
chr5 (145-249)||(37697462-37697566)
chr5 (145-249)||(37400193-37400297)
chr5 (145-249)||(37436382-37436486)
chr5 (215-249)||(37392339-37392373)
chr5 (12-78)||(37594866-37594932)
chr5 (145-249)||(37533775-37533879)
chr5 (145-249)||(37824570-37824674)
chr5 (12-78)||(37400364-37400430)
chr5 (215-249)||(37595069-37595103)
chr5 (12-78)||(37697329-37697395)
chr5 (12-78)||(37824437-37824503)
chr5 (12-249)||(37412657-37412894)
chr5 (12-69)||(37712166-37712223)
chr5 (12-60)||(37533642-37533690)
chr5 (12-56)||(37640414-37640458)
[»] chr4 (2 HSPs)
chr4 (145-249)||(16842257-16842361)
chr4 (117-181)||(24217189-24217253)
[»] chr3 (1 HSPs)
chr3 (215-249)||(14553783-14553817)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 37429269 - 37429524
Alignment:
Q  7 gagtgagatgaaacaatgatgatggaacttggcctattaggttat----taaaggaaaatactaaattttctaattcggtaagcttgtggaacacatccg 102  Q
    |||| |||||||||||||||||||||||||||||| |||||||||    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37429269 gagttagatgaaacaatgatgatggaacttggcctgttaggttatttattaaaggaaaatactaaaatttctaattcggtaagcttgtggaacacatccg 37429368  T
Q  103 agatcataccgttgaagttattatttccaagaccaaaggtagtgaggtgtgtgaggtttgaaa-----ataatggtggaatctcaccactaaagttgtta 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||    
T  37429369 agatcataccgttgaagttattatttccaagaccaaaggtagtgaggtgtgtgaggtttgaaaataatataatggtggaatctcaccactaaagttgtta 37429468  T
Q  198 gtagagaggtctaactttgttagttgagtgaggttccacaaagatagaggaagaac 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429469 gtagagaggtctaactttgttagttgagtgaggttccacaaagatagaggaagaac 37429524  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 37640547 - 37640651
Alignment:
Q  145 tgaggtgtgtgaggtttgaaaataatggtggaatctcaccactaaagttgttagtagagaggtctaactttgttagttgagtgaggttccacaaagatag 244  Q
    |||||||| |||||||||||| ||||||||  ||||||||| |||  || |||   || ||||| || | ||||||||| ||||||||||||||||||||    
T  37640547 tgaggtgtttgaggtttgaaagtaatggtgagatctcaccattaagtttattaaatgaaaggtccaaatatgttagttgggtgaggttccacaaagatag 37640646  T
Q  245 aggaa 249  Q
    |||||    
T  37640647 aggaa 37640651  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 37697462 - 37697566
Alignment:
Q  145 tgaggtgtgtgaggtttgaaaataatggtggaatctcaccactaaagttgttagtagagaggtctaactttgttagttgagtgaggttccacaaagatag 244  Q
    |||||||| |||||||||||| ||||||||  ||||||||  |||  || ||| | || || || || | ||||||||||||||||||||||||||||||    
T  37697462 tgaggtgtttgaggtttgaaagtaatggtgagatctcaccgttaagtttattatttgaaagatccaaatatgttagttgagtgaggttccacaaagatag 37697561  T
Q  245 aggaa 249  Q
    |||||    
T  37697562 aggaa 37697566  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 37400297 - 37400193
Alignment:
Q  145 tgaggtgtgtgaggtttgaaaataatggtggaatctcaccactaaagttgttagtagagaggtctaactttgttagttgagtgaggttccacaaagatag 244  Q
    |||||||| |||||||||||| ||||||||  ||||||||  |||  || |||   || ||||| || | ||||||||| ||||||||||||||||||||    
T  37400297 tgaggtgtttgaggtttgaaagtaatggtgagatctcaccgttaagtttattaaatgaaaggtccaaatatgttagttgggtgaggttccacaaagatag 37400198  T
Q  245 aggaa 249  Q
    |||||    
T  37400197 aggaa 37400193  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 37436382 - 37436486
Alignment:
Q  145 tgaggtgtgtgaggtttgaaaataatggtggaatctcaccactaaagttgttagtagagaggtctaactttgttagttgagtgaggttccacaaagatag 244  Q
    ||||||||| | ||||||||| |||||||| ||||||||   |||  || ||  | || ||||| || | ||||||||||||||||||||||||||||||    
T  37436382 tgaggtgtgaggggtttgaaagtaatggtgaaatctcactgttaagtttatttcttgaaaggtccaaatatgttagttgagtgaggttccacaaagatag 37436481  T
Q  245 aggaa 249  Q
    |||||    
T  37436482 aggaa 37436486  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 37392373 - 37392339
Alignment:
Q  215 tgttagttgagtgaggttccacaaagatagaggaa 249  Q
    |||||||||||||||||||||||||||||||||||    
T  37392373 tgttagttgagtgaggttccacaaagatagaggaa 37392339  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 37594866 - 37594932
Alignment:
Q  12 agatgaaacaatgatgatggaacttggcctattaggttattaaaggaaaatactaaattttctaatt 78  Q
    |||||||| | ||||||||||||||||||| ||||||| |||||||||| | |||||| ||| ||||    
T  37594866 agatgaaaaagtgatgatggaacttggcctgttaggttgttaaaggaaagtgctaaatattccaatt 37594932  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 37533775 - 37533879
Alignment:
Q  145 tgaggtgtgtgaggtttgaaaataatggtggaatctcaccactaaagttgttagtagagaggtctaactttgttagttgagtgaggttccacaaagatag 244  Q
    |||||||| |||||||||||| ||||||||  ||||||||  |||  || |||   || || || || | ||||||||| ||||||||||||||||||||    
T  37533775 tgaggtgtttgaggtttgaaagtaatggtgagatctcaccgttaagtttattatgtgaaagatccaaatatgttagttgggtgaggttccacaaagatag 37533874  T
Q  245 aggaa 249  Q
    |||||    
T  37533875 aggaa 37533879  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 37824570 - 37824674
Alignment:
Q  145 tgaggtgtgtgaggtttgaaaataatggtggaatctcaccactaaagttgttagtagagaggtctaactttgttagttgagtgaggttccacaaagatag 244  Q
    |||||||| |||||||||||| ||||||||  ||||||||  |||  || ||    || ||||| || | ||||||||| ||||||||||||||||||||    
T  37824570 tgaggtgtttgaggtttgaaagtaatggtgagatctcaccgttaagcttattttgtgaaaggtccaaatatgttagttgggtgaggttccacaaagatag 37824669  T
Q  245 aggaa 249  Q
    |||||    
T  37824670 aggaa 37824674  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 37400430 - 37400364
Alignment:
Q  12 agatgaaacaatgatgatggaacttggcctattaggttattaaaggaaaatactaaattttctaatt 78  Q
    |||||||| | ||||||||||||||||||| ||||||| ||| |||||| | |||||| ||| ||||    
T  37400430 agatgaaaaagtgatgatggaacttggcctgttaggttgttagaggaaagtgctaaatattccaatt 37400364  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 37595069 - 37595103
Alignment:
Q  215 tgttagttgagtgaggttccacaaagatagaggaa 249  Q
    ||||||||| |||||||||||||||||||||||||    
T  37595069 tgttagttgggtgaggttccacaaagatagaggaa 37595103  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 37697329 - 37697395
Alignment:
Q  12 agatgaaacaatgatgatggaacttggcctattaggttattaaaggaaaatactaaattttctaatt 78  Q
    |||||||| | ||||||||||||||||||| ||||||| ||| |||||| | |||||| ||| ||||    
T  37697329 agatgaaaaagtgatgatggaacttggcctgttaggttgttagaggaaagtgctaaatattccaatt 37697395  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 37824437 - 37824503
Alignment:
Q  12 agatgaaacaatgatgatggaacttggcctattaggttattaaaggaaaatactaaattttctaatt 78  Q
    |||||||| | ||||||||||||||||||| ||||||| ||| |||||| | |||||| ||| ||||    
T  37824437 agatgaaaaagtgatgatggaacttggcctgttaggttgttagaggaaagtgctaaatattccaatt 37824503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 37412894 - 37412657
Alignment:
Q  12 agatgaaacaatgatgatggaacttggcctattaggttattaaaggaaaatactaaattttctaattcggtaagcttgtggaacacatccgagatcatac 111  Q
    ||||| ||||||||||| |||| ||| ||| | | ||| ||| ||||||   |||||| ||||||||   ||||||| ||||||| || | |||||| ||    
T  37412894 agatggaacaatgatgagggaatttgacctgtaatgttgttagaggaaatatctaaatattctaatttaataagcttatggaacatattcaagatcaaac 37412795  T
Q  112 cgttgaagttattatttccaagaccaaaggtagtgaggtgtgtgaggtttgaaaataatggtggaatctcaccactaaagttgttagtagagaggtctaa 211  Q
    || | |||  ||| | | ||||| | |||  |||||| |||| ||| ||||||| ||||| ||| || |||||  |||  ||||||   || ||||| ||    
T  37412794 cggtaaaggcattttgttcaagatccaagtaagtgagatgtgcgagatttgaaagtaatgatgggatttcaccgttaagtttgttaaatgaaaggtccaa 37412695  T
Q  212 ctttgttagttgagtgaggttccacaaagatagaggaa 249  Q
     | ||||||||||||||||||||| |||||| ||||||    
T  37412694 atgtgttagttgagtgaggttccataaagattgaggaa 37412657  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 37712166 - 37712223
Alignment:
Q  12 agatgaaacaatgatgatggaacttggcctattaggttattaaaggaaaatactaaat 69  Q
    |||||||| | ||||||||||||||||||| ||||||| ||| |||||| | ||||||    
T  37712166 agatgaaaaagtgatgatggaacttggcctgttaggttgttagaggaaagtgctaaat 37712223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 37533642 - 37533690
Alignment:
Q  12 agatgaaacaatgatgatggaacttggcctattaggttattaaaggaaa 60  Q
    |||||||| | ||||||||||||||||||| ||||||| ||| ||||||    
T  37533642 agatgaaaaagtgatgatggaacttggcctgttaggttgttagaggaaa 37533690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 37640414 - 37640458
Alignment:
Q  12 agatgaaacaatgatgatggaacttggcctattaggttattaaag 56  Q
    |||||||| | ||||||||||||||||||| ||||||| ||||||    
T  37640414 agatgaaaaagtgatgatggaacttggcctgttaggttgttaaag 37640458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 16842361 - 16842257
Alignment:
Q  145 tgaggtgtgtgaggtttgaaaataatggtggaatctcaccactaaagttgttagtagagaggtctaactttgttagttgagtgaggttccacaaagatag 244  Q
    |||||||| |||||||||||| ||||||||  ||||||||  |||  || ||| | || || || || | ||||||||||||||||||||||||||||||    
T  16842361 tgaggtgtttgaggtttgaaagtaatggtgagatctcaccgttaagtttattatttgaaagatccaaatatgttagttgagtgaggttccacaaagatag 16842262  T
Q  245 aggaa 249  Q
    |||||    
T  16842261 aggaa 16842257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 24217253 - 24217189
Alignment:
Q  117 aagttattatttccaagaccaaaggtagtgaggtgtgtgaggtttgaaaataatggtggaatctc 181  Q
    ||||||||| ||  |||| | |||| ||||||||||||||||||||||| ||||| ||| |||||    
T  24217253 aagttattaatttgaagatctaaggaagtgaggtgtgtgaggtttgaaagtaatgatgggatctc 24217189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 14553783 - 14553817
Alignment:
Q  215 tgttagttgagtgaggttccacaaagatagaggaa 249  Q
    |||||||||||||||||||||||||||||||||||    
T  14553783 tgttagttgagtgaggttccacaaagatagaggaa 14553817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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