View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2070_low_9 (Length: 227)

Name: NF2070_low_9
Description: NF2070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2070_low_9
NF2070_low_9
[»] chr5 (16 HSPs)
chr5 (1-213)||(37429085-37429297)
chr5 (3-75)||(37412873-37412945)
chr5 (134-213)||(37640225-37640304)
chr5 (1-179)||(37697174-37697352)
chr5 (1-179)||(37824282-37824460)
chr5 (134-179)||(37400540-37400585)
chr5 (134-179)||(37533487-37533532)
chr5 (1-90)||(37533576-37533665)
chr5 (134-179)||(37594711-37594756)
chr5 (1-90)||(37594800-37594889)
chr5 (134-179)||(37703055-37703100)
chr5 (1-90)||(37703144-37703233)
chr5 (1-87)||(37436186-37436272)
chr5 (1-90)||(37392487-37392576)
chr5 (1-90)||(37400407-37400496)
chr5 (134-179)||(37712011-37712056)
[»] chr4 (3 HSPs)
chr4 (134-179)||(24217468-24217513)
chr4 (1-90)||(16842471-16842560)
chr4 (134-179)||(16842604-16842649)
[»] chr3 (1 HSPs)
chr3 (134-179)||(14553497-14553542)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 37429297 - 37429085
Alignment:
Q  1 agttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcaccaaattttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429297 agttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcaccaaattttcc 37429198  T
Q  101 aagttacattttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgata 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429197 aagttaaattttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgata 37429098  T
Q  201 actaactcacagg 213  Q
    || ||||||||||    
T  37429097 accaactcacagg 37429085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 37412873 - 37412945
Alignment:
Q  3 ttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaat 75  Q
    |||| ||||||||||| |||||| |||| ||||||   ||||||||||| ||||||||||||| |||||||||    
T  37412873 ttccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 37412945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 37640304 - 37640225
Alignment:
Q  134 ttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataactaactcacagg 213  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||||| |  |||||| |||| ||| ||| | ||||||||    
T  37640304 ttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttgtacctcagtgacaacaatctcacagg 37640225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 37697352 - 37697174
Alignment:
Q  1 agttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcaccaaattttcc 100  Q
    ||||||||||||| | ||||||||| | || ||||||   |||| |||||| ||||| ||| ||| ||| |||||||| ||| ||||||| |||  ||||    
T  37697352 agttccatcatcactttttcatctaccccacctttctcatttaggtttatcatttaacaaactagttgggccaattccaattgaaatcacaaaacgttcc 37697253  T
Q  101 aagttacattttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattccttgccttcgttgt 179  Q
    || ||   || |||  ||||  |   |||||  ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37697252 aaattgagttatgtgtttttggatgataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgt 37697174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 37824460 - 37824282
Alignment:
Q  1 agttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcaccaaattttcc 100  Q
    ||||||||||||| | ||||||||| |||| ||||||   ||| ||||||| | ||| ||| ||| |||||||||||| ||| ||||||| |||  |||     
T  37824460 agttccatcatcactttttcatctacctcatctttcttatttatatttatcatctaacaaactagttggcccaattccaattgaaatcacaaaacgttca 37824361  T
Q  101 aagttacattttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattccttgccttcgttgt 179  Q
    || ||   | ||||   ||||   | |||||  ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37824360 aaattgagtattgtggatttaagctttaacatgttaaatggaacaattccacattggtgttattctttgccttcgttgt 37824282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 37400540 - 37400585
Alignment:
Q  134 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 179  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37400540 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37400585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 37533532 - 37533487
Alignment:
Q  134 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 179  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37533532 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37533487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 37533665 - 37533576
Alignment:
Q  1 agttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcac 90  Q
    ||||||||||||| | ||||||||| |||| |||||||| |||| |||||| | ||| ||| ||| ||| |||||||| ||| |||||||    
T  37533665 agttccatcatcactttttcatctacctcacctttctattttaggtttatcatataacaaactagttgggccaattccaattgaaatcac 37533576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 37594756 - 37594711
Alignment:
Q  134 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 179  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37594756 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37594711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 37594889 - 37594800
Alignment:
Q  1 agttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcac 90  Q
    ||||||||||||| | ||||||||| |||| |||||||| |||| |||||| | ||| ||| ||| ||| |||||||| ||| |||||||    
T  37594889 agttccatcatcactttttcatctacctcacctttctattttaggtttatcatataacaaactagttgggccaattccaattgaaatcac 37594800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 37703100 - 37703055
Alignment:
Q  134 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 179  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37703100 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37703055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 37703233 - 37703144
Alignment:
Q  1 agttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcac 90  Q
    ||||||||||||| | ||||||||| |||| |||| ||| |||| |||||| ||||| ||| ||| ||| |||||||| ||| |||||||    
T  37703233 agttccatcatcactttttcatctacctcacctttttattttaggtttatcatttaacaaactagttgggccaattccaattgaaatcac 37703144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 37436272 - 37436186
Alignment:
Q  1 agttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaat 87  Q
    ||||||||||||| | ||||||||| | || ||||||   ||||||||||| ||||| ||| ||| |||||||||||| ||| ||||    
T  37436272 agttccatcatcactttttcatctaccccacctttctcatttagatttatcatttaacaaactagttggcccaattccaattgaaat 37436186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 37392487 - 37392576
Alignment:
Q  1 agttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcac 90  Q
    ||||||||||||| | ||||||||| |  | |||||| | ||||||||||| | ||| ||| ||| ||||||||||||  ||||||||||    
T  37392487 agttccatcatcactttttcatctacccaacctttcttttttagatttatcatctaacaaactagttggcccaattccagttcaaatcac 37392576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 37400407 - 37400496
Alignment:
Q  1 agttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcac 90  Q
    ||||||||||||| | ||||||||| |||| ||||||   ||| ||||||| | ||| ||| ||| |||||||||||| ||| |||||||    
T  37400407 agttccatcatcactttttcatctacctcatctttctcatttatatttatcatctaacaaactagttggcccaattccaattgaaatcac 37400496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 37712056 - 37712011
Alignment:
Q  134 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 179  Q
    ||||| |||||||||||||| ||||||||||| |||||||| ||||    
T  37712056 ttaaatggaacaattccacagtggtgttattctttgccttcattgt 37712011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 24217468 - 24217513
Alignment:
Q  134 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 179  Q
    ||||| ||||||||||| || |||||||||||||||||||||||||    
T  24217468 ttaaatggaacaattccgcaatggtgttattccttgccttcgttgt 24217513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 16842471 - 16842560
Alignment:
Q  1 agttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcac 90  Q
    ||||||||||||| | ||||||||| || | |||||||  ||| ||||||| ||||| ||| | | |||||||||||| ||| |||||||    
T  16842471 agttccatcatcactttttcatctaccttatctttctaatttatatttatcatttaacaaactggttggcccaattccaattgaaatcac 16842560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 16842604 - 16842649
Alignment:
Q  134 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 179  Q
    ||||| |||||||||||| | ||||||||||| |||||||||||||    
T  16842604 ttaaatggaacaattccaaattggtgttattctttgccttcgttgt 16842649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 14553542 - 14553497
Alignment:
Q  134 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 179  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  14553542 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 14553497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University