View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20710_high_6 (Length: 315)
Name: NF20710_high_6
Description: NF20710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20710_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 29379322 - 29379630
Alignment:
| Q |
1 |
tattatgttagatcacagcattactttataaacttgtttgcactgtggttaaatagtaaaatatgataggttatgaattcattacaattactacatga-- |
98 |
Q |
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| T |
29379322 |
tattatgttagatcacagcattactttataaacttgtttgcactgtggttaaatagtaaaatatgataggttatgaattcattacaattactacatgatt |
29379421 |
T |
|
| Q |
99 |
-------tcttgaaatatttgaaacataattgtgttccgaatcggataataaagctataggttttagctatgaaaggtggttccacggtggaatcacctt |
191 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29379422 |
tatactctcttgaaatatttgaaacaaaattgtgttccgaatcggataataaagctataggttatagctatgaaaggtggttccacggtggaatcacctt |
29379521 |
T |
|
| Q |
192 |
tgt-nnnnnnnnnnnnnnnttcggtatttcaannnnnnnnaaaagatgagtctgtcatggaaggaagaaccgattcatgcagaataaaagtggtttacag |
290 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29379522 |
tgtaaaaaaaaatgaaaaattcggtatttcaatttttttaaaaagatgagtctgtcatggaaggaagaaccgattcatgcagaataaaagtggtttacag |
29379621 |
T |
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| Q |
291 |
agggtaaac |
299 |
Q |
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||||||||| |
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| T |
29379622 |
agggtaaac |
29379630 |
T |
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