View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20710_low_11 (Length: 279)
Name: NF20710_low_11
Description: NF20710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20710_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 2492693 - 2492947
Alignment:
| Q |
18 |
ttaggaaaaacatttgaagcttctattgtggagttacggacacaatcagaacaattgttagcagatatgtctcctctacataatattgaaccataaatcc |
117 |
Q |
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| T |
2492693 |
ttaggaaaaacatttgaagcttctattgtggagttacggacacaatcagaacaattgttagcagatatgtctcctctacataatattgaaccataaatcc |
2492792 |
T |
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| Q |
118 |
tgctgttgttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaattcaataaagtttgcaatatgactccattgac |
217 |
Q |
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| T |
2492793 |
tgctgttgttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaattcaataaagtttgcaatatgactccattgac |
2492892 |
T |
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| Q |
218 |
agtagtattttcttcattcttacatgtggaacctaatgctctattagtattatct |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2492893 |
agtagtattttcttcattcttacatgtggaacctaatgctctattagtatcatct |
2492947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 2489412 - 2489611
Alignment:
| Q |
18 |
ttaggaaaaacatttgaagcttctattgtggagttacggacacaatcagaacaattgttagcagatatgtctcctctacataatattgaaccataaatcc |
117 |
Q |
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|||||| || ||||||| ||| || |||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2489412 |
ttaggacaatcatttgacgctactcttgtagagttaaggacacagatagaacaattgttagcagatatgtctcctctacataatattgaaccataaaccc |
2489511 |
T |
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| Q |
118 |
tgctgttgttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaattcaataaagtttgcaatatgactccattgac |
217 |
Q |
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| T |
2489512 |
tgctggagttttctcctacagtggtttggtaaaatccttggtgatcaaccacatttgaagcaagagaatccaataaggtatggaatatgtcttcattgac |
2489611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 2495823 - 2496003
Alignment:
| Q |
18 |
ttaggaaaaacatttgaagcttctattgtggagttacggacacaatcagaacaattgttagcagatatgtctcctctacataatattgaaccataaatcc |
117 |
Q |
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|||||| || ||||||| | | || |||| |||||| ||||||||| | ||||||| |||||||||||||| |||||||||||||||| |||||||| || |
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| T |
2495823 |
ttaggacaatcatttgaggatactcttgtagagttaaggacacaattaaaacaattattagcagatatgtcccctctacataatattgtaccataaagcc |
2495922 |
T |
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| Q |
118 |
tgctgttgttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaattcaataaagttt |
198 |
Q |
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|| | |||| |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| |||| |
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| T |
2495923 |
tgttaggcttttttcctacaatggtttggtaaaatccatggctatcaacgacgtttgaagcaagagaatccaataaggttt |
2496003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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