View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20710_low_16 (Length: 213)

Name: NF20710_low_16
Description: NF20710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20710_low_16
NF20710_low_16
[»] chr3 (5 HSPs)
chr3 (1-213)||(1028463-1028675)
chr3 (1-213)||(1023535-1023747)
chr3 (4-103)||(1011268-1011367)
chr3 (1-140)||(970954-971093)
chr3 (74-213)||(990479-990618)
[»] chr4 (1 HSPs)
chr4 (1-213)||(22671189-22671399)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1028675 - 1028463
Alignment:
Q  1 ttcaacttcacaaagttaacaacactgacttttatacttgactattaacacttgcttcctaactctcatatgcagcaaagtaacgaattttaaatcacgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  1028675 ttcaacttcacaaagttaacaacactgacttttatacttgactattaacacttgcttcctaactctcatgtgcagcaaagtaacgaattttaaattacgc 1028576  T
Q  101 ttcgacattaaaacatggcttggatatttgaagtttctagcctatatggactttagcttcaactataaaactgattagcaaaactacttgaaatttctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1028575 ttcgacattaaaacatggcttggatatttgaagtttctagcctatatggactttagcttcaactataaaactgattagcaaaactacttgaaatttctta 1028476  T
Q  201 cctatttggagtt 213  Q
    |||||||||||||    
T  1028475 cctatttggagtt 1028463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1023747 - 1023535
Alignment:
Q  1 ttcaacttcacaaagttaacaacactgacttttatacttgactattaacacttgcttcctaactctcatatgcagcaaagtaacgaattttaaatcacgc 100  Q
    ||||| ||||||||||||||| || |||| ||| ||||||||| ||| ||| |||||||||||||||||  ||||||||||||| | |||| ||| ||||    
T  1023747 ttcaatttcacaaagttaacaccaatgacgtttgtacttgactcttaccacgtgcttcctaactctcattggcagcaaagtaactagttttcaatgacgc 1023648  T
Q  101 ttcgacattaaaacatggcttggatatttgaagtttctagcctatatggactttagcttcaactataaaactgattagcaaaactacttgaaatttctta 200  Q
    ||||||||||||||||||| ||| ||||||| |||||| ||||||||||| |||||||||||||||||| |||| ||||| ||||| ||| ||||||| |    
T  1023647 ttcgacattaaaacatggcatggctatttgatgtttcttgcctatatggattttagcttcaactataaagctgaatagcacaactatttgtaatttctaa 1023548  T
Q  201 cctatttggagtt 213  Q
    |||||||||||||    
T  1023547 cctatttggagtt 1023535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 1011367 - 1011268
Alignment:
Q  4 aacttcacaaagttaacaacactgacttttatacttgactattaacacttgcttcctaactctcatatgcagcaaagtaacgaattttaaatcacgcttc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1011367 aacttcacaaagttaacaacactgacttttatacttgactattaacacttgcttcctaactctcatgtgcagcaaagtaacgaattttaaatcacgcttc 1011268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 971093 - 970954
Alignment:
Q  1 ttcaacttcacaaagttaacaacactgacttttatacttgactattaacacttgcttcctaactctcatatgcagcaaagtaacgaattttaaatcacgc 100  Q
    |||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| |  |||||| ||||| ||||| |||||||     
T  971093 ttcaacttcacaaagtgaacaccactgacttttatacttgactcttaacacttgcttcctaactctcatgtctagcaaactaacggattttgaatcacga 970994  T
Q  101 ttcgacattaaaacatggcttggatatttgaagtttctag 140  Q
    ||||||||||| || ||||||||  |||| ||||||||||    
T  970993 ttcgacattaatacttggcttggccatttcaagtttctag 970954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 990618 - 990479
Alignment:
Q  74 agcaaagtaacgaattttaaatcacgcttcgacattaaaacatggcttggatatttgaagtttctagcctatatggactttagcttcaactataaaactg 173  Q
    |||||||||| ||||||| || |||||||| ||||||||||||||||||| |||||  | ||||| ||||||||||| ||||||||||||||||||||||    
T  990618 agcaaagtaatgaattttgaaccacgcttcaacattaaaacatggcttggctatttccaatttcttgcctatatggattttagcttcaactataaaactg 990519  T
Q  174 attagcaaaactacttgaaatttcttacctatttggagtt 213  Q
    | ||||| || |||||||||||||| |||||| |||||||    
T  990518 aatagcacaagtacttgaaatttctgacctatatggagtt 990479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 22671189 - 22671399
Alignment:
Q  1 ttcaacttcacaaagttaacaacactgacttttatacttgactattaacacttgcttcctaactctcatatgcagcaaagtaacgaattttaaatcacgc 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||| || ||| ||||||||    
T  22671189 ttcaacttcacaaagttaacaccactgacttttatacttgactattaacacttgcttcctaa--ctcatgtgcagcaaagtaac-aaatttgaatcacgc 22671285  T
Q  101 ttcgacattaaaacatggcttggatatttgaagtttctagcctatatggac-tttagcttcaactataaaactgattagcaaaactacttgaaatttctt 199  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||| ||||||||||||| || |||||| ||||||||||| ||||||    
T  22671286 ttcgacattaaaacatggcttggctatttgaagtttctagactatatggacttttagtttcaactataaaattggttagcacaactacttgaattttctt 22671385  T
Q  200 acctatttggagtt 213  Q
    | ||||||||||||    
T  22671386 agctatttggagtt 22671399  T

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