View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20710_low_17 (Length: 204)

Name: NF20710_low_17
Description: NF20710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20710_low_17
NF20710_low_17
[»] chr5 (24 HSPs)
chr5 (1-200)||(11684375-11684574)
chr5 (108-178)||(7550436-7550506)
chr5 (129-183)||(10125631-10125685)
chr5 (109-183)||(10303879-10303953)
chr5 (121-171)||(10771813-10771863)
chr5 (121-183)||(14331461-14331523)
chr5 (40-164)||(443935-444060)
chr5 (81-164)||(38028590-38028674)
chr5 (40-99)||(6109483-6109542)
chr5 (109-164)||(25720349-25720404)
chr5 (40-99)||(33533550-33533609)
chr5 (41-99)||(4014435-4014493)
chr5 (42-96)||(21768211-21768265)
chr5 (79-156)||(25461269-25461347)
chr5 (49-99)||(37611226-37611276)
chr5 (49-99)||(37787956-37788006)
chr5 (132-178)||(42646996-42647042)
chr5 (122-171)||(5377122-5377171)
chr5 (1-99)||(11615460-11615560)
chr5 (129-190)||(16457512-16457573)
chr5 (1-49)||(29588832-29588881)
chr5 (121-170)||(41535030-41535079)
chr5 (1-62)||(1961944-1962006)
chr5 (129-181)||(11095410-11095462)
[»] chr7 (18 HSPs)
chr7 (44-183)||(529379-529519)
chr7 (1-99)||(26935568-26935668)
chr7 (108-184)||(12242326-12242402)
chr7 (120-184)||(29363602-29363666)
chr7 (40-115)||(25596033-25596109)
chr7 (121-160)||(31002817-31002856)
chr7 (121-171)||(8427108-8427158)
chr7 (37-95)||(12792513-12792571)
chr7 (41-95)||(12792578-12792632)
chr7 (107-177)||(33894708-33894778)
chr7 (132-185)||(3968542-3968595)
chr7 (3-49)||(17989091-17989139)
chr7 (107-160)||(25670522-25670575)
chr7 (54-99)||(28165105-28165150)
chr7 (121-193)||(32410635-32410708)
chr7 (121-177)||(1418514-1418570)
chr7 (40-92)||(12792642-12792694)
chr7 (121-161)||(25907572-25907612)
[»] chr2 (23 HSPs)
chr2 (107-177)||(11513977-11514047)
chr2 (49-99)||(34652047-34652097)
chr2 (32-99)||(3070257-3070324)
chr2 (41-100)||(16398115-16398174)
chr2 (28-99)||(33267535-33267605)
chr2 (123-178)||(38767500-38767555)
chr2 (49-99)||(1939343-1939393)
chr2 (121-178)||(15370241-15370298)
chr2 (41-101)||(3078649-3078709)
chr2 (121-177)||(22878193-22878249)
chr2 (40-99)||(16867739-16867798)
chr2 (1-49)||(18962106-18962156)
chr2 (107-185)||(4350771-4350849)
chr2 (40-98)||(12464485-12464543)
chr2 (121-163)||(13866973-13867015)
chr2 (77-181)||(6547939-6548044)
chr2 (32-97)||(16451110-16451175)
chr2 (125-178)||(40759259-40759312)
chr2 (40-115)||(680503-680579)
chr2 (121-177)||(787427-787483)
chr2 (28-60)||(14209258-14209290)
chr2 (42-94)||(41817170-41817222)
chr2 (39-95)||(43205308-43205364)
[»] chr6 (17 HSPs)
chr6 (29-90)||(24974436-24974497)
chr6 (107-181)||(10016704-10016778)
chr6 (108-178)||(28005474-28005544)
chr6 (47-92)||(2455817-2455862)
chr6 (42-99)||(4420645-4420702)
chr6 (120-181)||(7351586-7351647)
chr6 (40-99)||(35070478-35070537)
chr6 (119-177)||(33080497-33080555)
chr6 (42-95)||(31686378-31686431)
chr6 (102-175)||(34429635-34429708)
chr6 (145-181)||(430292-430328)
chr6 (121-177)||(1432234-1432290)
chr6 (35-99)||(2034457-2034521)
chr6 (120-164)||(3738195-3738239)
chr6 (40-115)||(6647387-6647463)
chr6 (40-115)||(31624090-31624166)
chr6 (132-180)||(33068518-33068566)
[»] chr8 (25 HSPs)
chr8 (28-92)||(6875285-6875349)
chr8 (105-182)||(1889049-1889126)
chr8 (1-99)||(11494105-11494205)
chr8 (87-177)||(14926901-14926992)
chr8 (107-178)||(16162841-16162912)
chr8 (108-178)||(11569375-11569445)
chr8 (108-162)||(24326113-24326167)
chr8 (105-182)||(1664448-1664525)
chr8 (105-182)||(1892138-1892215)
chr8 (17-62)||(5290606-5290651)
chr8 (121-177)||(2487927-2487983)
chr8 (127-171)||(3254317-3254361)
chr8 (40-99)||(27028831-27028890)
chr8 (40-99)||(28769350-28769409)
chr8 (40-99)||(33714247-33714306)
chr8 (40-102)||(778389-778451)
chr8 (49-95)||(14929153-14929199)
chr8 (49-99)||(41336656-41336706)
chr8 (122-164)||(44236755-44236797)
chr8 (121-169)||(3953897-3953945)
chr8 (40-92)||(6864477-6864529)
chr8 (121-177)||(7714337-7714393)
chr8 (108-164)||(10075485-10075541)
chr8 (145-177)||(41589705-41589737)
chr8 (47-99)||(42215093-42215145)
[»] chr3 (27 HSPs)
chr3 (65-164)||(25925767-25925867)
chr3 (109-173)||(27795936-27796000)
chr3 (108-171)||(22667485-22667548)
chr3 (108-171)||(22724124-22724187)
chr3 (1-99)||(20669131-20669231)
chr3 (108-184)||(20210840-20210916)
chr3 (121-185)||(25459541-25459605)
chr3 (121-177)||(41033175-41033231)
chr3 (122-178)||(44237513-44237569)
chr3 (107-178)||(44014716-44014787)
chr3 (32-85)||(34363990-34364043)
chr3 (121-164)||(21872227-21872270)
chr3 (107-186)||(39980811-39980889)
chr3 (7-74)||(2825113-2825181)
chr3 (3-113)||(23793542-23793657)
chr3 (112-170)||(27294432-27294490)
chr3 (147-185)||(32663759-32663797)
chr3 (49-99)||(37273143-37273193)
chr3 (108-158)||(42530342-42530392)
chr3 (49-99)||(43948664-43948714)
chr3 (43-92)||(32582747-32582796)
chr3 (121-170)||(41057250-41057299)
chr3 (148-184)||(902045-902081)
chr3 (49-85)||(22667413-22667449)
chr3 (49-85)||(22724052-22724088)
chr3 (13-62)||(26492918-26492969)
chr3 (39-99)||(41644456-41644516)
[»] chr1 (27 HSPs)
chr1 (121-185)||(24460312-24460376)
chr1 (1-100)||(23895288-23895389)
chr1 (117-171)||(28837278-28837332)
chr1 (128-178)||(32958739-32958789)
chr1 (40-99)||(2294911-2294970)
chr1 (107-177)||(36070262-36070332)
chr1 (108-177)||(26679436-26679505)
chr1 (41-101)||(4548722-4548782)
chr1 (40-115)||(6292493-6292569)
chr1 (121-177)||(21002250-21002306)
chr1 (121-177)||(35017677-35017733)
chr1 (121-164)||(11217946-11217989)
chr1 (40-99)||(14629977-14630036)
chr1 (121-164)||(31517672-31517715)
chr1 (39-164)||(9507243-9507369)
chr1 (121-171)||(14737651-14737701)
chr1 (133-171)||(18327071-18327109)
chr1 (49-95)||(47020516-47020562)
chr1 (107-161)||(51929397-51929451)
chr1 (151-184)||(36495403-36495436)
chr1 (108-161)||(37272529-37272582)
chr1 (9-94)||(2522596-2522683)
chr1 (46-98)||(4445714-4445766)
chr1 (121-181)||(33976273-33976333)
chr1 (128-184)||(34668758-34668814)
chr1 (28-60)||(41516137-41516169)
chr1 (107-151)||(43371836-43371880)
[»] chr4 (30 HSPs)
chr4 (108-170)||(47970378-47970440)
chr4 (40-163)||(18628486-18628613)
chr4 (119-178)||(11191590-11191649)
chr4 (121-183)||(42641552-42641614)
chr4 (108-165)||(4691930-4691987)
chr4 (34-99)||(27721711-27721776)
chr4 (1-99)||(47800582-47800682)
chr4 (121-170)||(50298610-50298659)
chr4 (41-101)||(17975378-17975438)
chr4 (107-183)||(44320030-44320106)
chr4 (40-99)||(6364149-6364208)
chr4 (109-164)||(25896867-25896922)
chr4 (77-175)||(35743319-35743418)
chr4 (117-164)||(46187841-46187888)
chr4 (109-164)||(46797097-46797152)
chr4 (125-184)||(52333697-52333756)
chr4 (122-185)||(54277234-54277297)
chr4 (110-164)||(2977908-2977962)
chr4 (121-187)||(7367963-7368029)
chr4 (53-99)||(14011247-14011293)
chr4 (146-184)||(35571543-35571581)
chr4 (41-99)||(23967011-23967071)
chr4 (82-164)||(46859972-46860056)
chr4 (107-175)||(2996654-2996722)
chr4 (125-181)||(18512430-18512486)
chr4 (130-170)||(20656143-20656183)
chr4 (145-177)||(20935943-20935975)
chr4 (121-185)||(22523775-22523839)
chr4 (40-139)||(42121488-42121587)
chr4 (121-185)||(42641409-42641473)
[»] scaffold0199 (1 HSPs)
scaffold0199 (105-182)||(6889-6966)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-70)||(21325-21396)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 11684375 - 11684574
Alignment:
Q  1 atttttataacaaaatataaaatagtgaaactgttttcatataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagcttac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  11684375 atttttataacaaaatataaaatagtgaaactgttttcatataagctattttcataagctatgctggagagcttacggaaataagttgaaaacagcttac 11684474  T
Q  101 aacgtgtcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccctaattagagcatctgtaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11684475 aacgtgtcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccctaattatagcatctgtaa 11684574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 7550506 - 7550436
Alignment:
Q  108 cataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacag 178  Q
    |||||||| ||| ||| ||||||||||||  | ||| |||| |||||||||||||||||||||| ||||||    
T  7550506 cataagctctctcaaagagtctcacaagtaattatgtcagtggataagctcaaataaaccaatcaaaacag 7550436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 10125685 - 10125631
Alignment:
Q  129 tcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccct 183  Q
    ||||||||||||||| ||||||||||||| |||||| ||||| |||| |||||||    
T  10125685 tcacaagtgctcatgtcagtagataagcttaaataagccaatttaaagagaccct 10125631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 10303879 - 10303953
Alignment:
Q  109 ataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccct 183  Q
    ||||||| ||| ||| | |||||||| |||| ||| | |||||||||||||||||  ||||||||||||||||||    
T  10303879 ataagctctctcaaataatctcacaaatgcttatgtccgtagataagctcaaatatgccaatctaaacagaccct 10303953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 10771863 - 10771813
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatc 171  Q
    ||||| ||||||||||||| ||| |||||||||||||||||||| ||||||    
T  10771863 aaacaatctcacaagtgcttatgccagtagataagctcaaataagccaatc 10771813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 14331461 - 14331523
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccct 183  Q
    ||||| |||||  |||||| ||||||||||||||||||||||||  ||||| |||||||||||    
T  14331461 aaacaatctcaagagtgcttatgacagtagataagctcaaataagtcaatccaaacagaccct 14331523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 164
Target Start/End: Original strand, 443935 - 444060
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagcttacaa-cgtgtcataagctttcttaaacagtctcacaagtgc 138  Q
    |||||| | |||||||||||||| |||||| ||||  ||| ||||| || ||||||||||||| | |||||| |  | ||  |||||||||||||||||     
T  443935 tataagatgttttcataagctatcttggagtgcttttggagataagctggaaacagcttacaaacatgtcattacttctcccaaacagtctcacaagtgt 444034  T
Q  139 tcatgacagtagataagctcaaataa 164  Q
    | |||  | |||||||||||||||||    
T  444035 ttatgcaattagataagctcaaataa 444060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 38028590 - 38028674
Alignment:
Q  81 ataagttgaaaacagcttaca-acgtgtcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataa 164  Q
    ||||||||||||||||||  | || ||||||||||| ||| ||| ||||||| ||||  ||||  ||||||||||||||||||||    
T  38028590 ataagttgaaaacagcttctagacttgtcataagctctctgaaatagtctcataagttttcataccagtagataagctcaaataa 38028674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 6109483 - 6109542
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    ||||||||||| |||| ||||||||| ||||||||  ||||||||| |||||||| ||||    
T  6109483 tataagctattctcattagctatgttcgagagcttttggaaataagctgaaaacaactta 6109542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 25720404 - 25720349
Alignment:
Q  109 ataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataa 164  Q
    ||||||| ||| | ||||||||||||||||| ||| |||||||||| |||||||||    
T  25720404 ataagctctctcagacagtctcacaagtgcttatgccagtagataacctcaaataa 25720349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 33533609 - 33533550
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||| | |||||| ||||||| |||||||||||  |||||||||||||||||| ||||    
T  33533609 tataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaacaactta 33533550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 4014493 - 4014435
Alignment:
Q  41 ataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    ||||||| |||||||||||||| ||||||| |||  | ||||||| |||||||||||||    
T  4014493 ataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaacagctta 4014435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 21768265 - 21768211
Alignment:
Q  42 taagctattttcataagctatgttggagagcttccggaaataagttgaaaacagc 96  Q
    |||||| |||||||||| ||| ||| ||||||| || ||||||||||||||||||    
T  21768265 taagctgttttcataagttatcttgaagagcttacgaaaataagttgaaaacagc 21768211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 25461347 - 25461269
Alignment:
Q  79 aaataagttgaaaacagcttac-aacgtgtcataagctttcttaaacagtctcacaagtgctcatgacagtagataagc 156  Q
    ||||||| ||||||||||| |  ||| ||||||||| ||| | ||||||||||||||||||| ||| ||||| ||||||    
T  25461347 aaataagctgaaaacagctaatgaacatgtcataagttttttgaaacagtctcacaagtgctaatgtcagtaaataagc 25461269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 37611276 - 37611226
Alignment:
Q  49 ttttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||||||||||| |||||||||||  ||||||||  |||||||||||||    
T  37611276 ttttcataagctatcttggagagcttatggaaataacctgaaaacagctta 37611226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 37788006 - 37787956
Alignment:
Q  49 ttttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||||||||||| |||||||||||  ||||||||  |||||||||||||    
T  37788006 ttttcataagctatcttggagagcttatggaaataacctgaaaacagctta 37787956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 42646996 - 42647042
Alignment:
Q  132 caagtgctcatgacagtagataagctcaaataaaccaatctaaacag 178  Q
    |||||||| ||| |||||||||||||||||||| |||||| ||||||    
T  42646996 caagtgctaatgtcagtagataagctcaaataagccaatccaaacag 42647042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 5377171 - 5377122
Alignment:
Q  122 aacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatc 171  Q
    |||||||| ||||||||| ||| || ||||||||||||||||| ||||||    
T  5377171 aacagtcttacaagtgcttatgtcaatagataagctcaaataagccaatc 5377122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 11615460 - 11615560
Alignment:
Q  1 atttttataacaaaatataaaat--agtgaaactgttttcatataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctt 98  Q
    ||||||||||||||| |||||||  ||| ||| ||||| | |||||||| |||||||||| |||  |   ||||||  ||||||||| ||||||||||||    
T  11615460 atttttataacaaaagataaaataaagtcaaattgtttacgtataagctgttttcataagatatccttatgagcttatggaaataagctgaaaacagctt 11615559  T
Q  99 a 99  Q
    |    
T  11615560 a 11615560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 16457573 - 16457512
Alignment:
Q  129 tcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccctaattaga 190  Q
    ||||||||||||||| |||||||||| || ||||||| ||||| ||||| ||| ||| ||||    
T  16457573 tcacaagtgctcatgtcagtagataaactgaaataaaacaatccaaacaaaccttaaataga 16457512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29588832 - 29588881
Alignment:
Q  1 atttttataacaaaatataaaatagtg-aaactgttttcatataagctat 49  Q
    |||| ||||||||||||||||||| || ||| ||||||||||||||||||    
T  29588832 atttctataacaaaatataaaataatgaaaattgttttcatataagctat 29588881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 41535079 - 41535030
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaat 170  Q
    ||||||| ||||||||||| ||| |||||||| ||||||||||| |||||    
T  41535079 aaacagtgtcacaagtgcttatggcagtagatgagctcaaataagccaat 41535030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1961944 - 1962006
Alignment:
Q  1 atttttataacaaaatataaaat--agtgaaactgttttcatataagctattttcataagctat 62  Q
    |||||||||||||||| ||||||  |||  |||||  |||||||||||||||||||||||||||    
T  1961944 atttttataacaaaatgtaaaattaagtccaactg-cttcatataagctattttcataagctat 1962006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 11095462 - 11095410
Alignment:
Q  129 tcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagacc 181  Q
    ||||||||| | ||| ||||||||||||| |||||||||| || |||||||||    
T  11095462 tcacaagtgtttatgtcagtagataagcttaaataaaccagtccaaacagacc 11095410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 529379 - 529519
Alignment:
Q  44 agctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta-caacgtgtcataagctttcttaaacagtctcacaagtgctcat 142  Q
    |||| |||||||||||||| |||||||||||  | ||||| |||||||||||||||  ||| ||||||||| | ||  ||| || |||||||||| | ||    
T  529379 agctgttttcataagctatcttggagagcttatgaaaatatgttgaaaacagcttatgaacttgtcataagttctcccaaatagcctcacaagtgtttat 529478  T
Q  143 gacagtagataagctcaaataaaccaatctaaacagaccct 183  Q
    | ||||||||||||||||||||  ||||| || ||||||||    
T  529479 gccagtagataagctcaaataagtcaatccaatcagaccct 529519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 26935668 - 26935568
Alignment:
Q  1 atttttataacaaaatataaaata--gtgaaactgttttcatataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctt 98  Q
    ||||||||||||||  ||||||||  || ||| ||||||||||| |||||||||||||| ||||  |  |||||||  ||||||||| ||||||||||||    
T  26935668 atttttataacaaatgataaaataaggttaaattgttttcatatgagctattttcataatctattctaaagagcttatggaaataagctgaaaacagctt 26935569  T
Q  99 a 99  Q
    |    
T  26935568 a 26935568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 12242326 - 12242402
Alignment:
Q  108 cataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagacccta 184  Q
    |||||||| ||| ||||||||||||||| | | ||| |||||||| | |||||||||| ||||| ||||||||||||    
T  12242326 cataagctctctcaaacagtctcacaagaggttatgtcagtagatcacctcaaataaatcaatcaaaacagacccta 12242402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 29363602 - 29363666
Alignment:
Q  120 taaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagacccta 184  Q
    |||||||||||||||||||| |||  |||||||||| |||||||| |||||| ||||||| ||||    
T  29363602 taaacagtctcacaagtgcttatgttagtagataagttcaaataagccaatccaaacagatccta 29363666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 25596033 - 25596109
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta-caacgtgtcataagct 115  Q
    ||||| || |||||||||||||| |||||||||||  | |||||||||||||||| ||||  ||| |||||||||||    
T  25596033 tataaactcttttcataagctatcttggagagcttatgaaaataagttgaaaacaacttagtaacttgtcataagct 25596109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 31002856 - 31002817
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaa 160  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  31002856 aaacagtctcacaattgcttatgacagtagataagctcaa 31002817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 8427108 - 8427158
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatc 171  Q
    |||||||||||||||| || |||  |||||||||||||||||||| |||||    
T  8427108 aaacagtctcacaagtacttatgttagtagataagctcaaataaatcaatc 8427158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 12792571 - 12792513
Alignment:
Q  37 tcatataagctattttcataagctatgttggagagcttccggaaataagttgaaaacag 95  Q
    |||||||||||||||||||||||||| ||| |||||||   |||||||| ||| |||||    
T  12792571 tcatataagctattttcataagctatcttgaagagcttattgaaataagctgataacag 12792513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 12792632 - 12792578
Alignment:
Q  41 ataagctattttcataagctatgttggagagcttccggaaataagttgaaaacag 95  Q
    |||||||||||||||||||||| ||| |||||||  | ||||||| |||||||||    
T  12792632 ataagctattttcataagctatcttgaagagcttatgaaaataagctgaaaacag 12792578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 33894708 - 33894778
Alignment:
Q  107 tcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaaca 177  Q
    ||||||||| ||  ||||||||||||||||||| ||| || | ||||||||||||||| | |||| |||||    
T  33894708 tcataagctctcacaaacagtctcacaagtgcttatgtcatttgataagctcaaataagctaatccaaaca 33894778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 3968595 - 3968542
Alignment:
Q  132 caagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccctaa 185  Q
    ||||| || ||| |||||||||| ||||||||||| |||| |||||||||||||    
T  3968595 caagtacttatggcagtagataacctcaaataaactaatccaaacagaccctaa 3968542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 17989139 - 17989091
Alignment:
Q  3 ttttataacaaaatataaaat--agtgaaactgttttcatataagctat 49  Q
    |||||||||||||||||||||  ||| ||||||||||||||||| ||||    
T  17989139 ttttataacaaaatataaaataaagtcaaactgttttcatataaactat 17989091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 25670575 - 25670522
Alignment:
Q  107 tcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaa 160  Q
    ||||||| ||||| ||||||||||||||| ||| ||| || |||||||||||||    
T  25670575 tcataagttttctcaaacagtctcacaagagcttatgtcaatagataagctcaa 25670522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 28165105 - 28165150
Alignment:
Q  54 ataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||||||  ||||||||||  |||||||||||||||||||||||    
T  28165105 ataagctatcatggagagcttatggaaataagttgaaaacagctta 28165150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 32410635 - 32410708
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaa-acagaccctaattagagca 193  Q
    ||||||| |||||| |||| ||| || ||||||||||||||||| |||||| || |||| |||| |||||||||    
T  32410635 aaacagtttcacaaatgcttatgccaatagataagctcaaataagccaatccaagacaggcccttattagagca 32410708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 1418514 - 1418570
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaaca 177  Q
    |||||| |||| ||||||| ||| ||||||||||||||||||||  ||||| |||||    
T  1418514 aaacagcctcataagtgcttatgccagtagataagctcaaataagtcaatccaaaca 1418570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 12792694 - 12792642
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaa 92  Q
    ||||||||||||||||||||||| ||| ||||| |  ||||||||| ||||||    
T  12792694 tataagctattttcataagctatcttgaagagcatatggaaataagctgaaaa 12792642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 25907612 - 25907572
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaa 161  Q
    ||||||||||||||||||| ||| |||||||| ||||||||    
T  25907612 aaacagtctcacaagtgcttatgtcagtagattagctcaaa 25907572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 11513977 - 11514047
Alignment:
Q  107 tcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaaca 177  Q
    ||||||||| ||| ||||||||||||||||||| |||  ||||||||| |||||||||||||||| |||||    
T  11513977 tcataagctctctaaaacagtctcacaagtgcttatgctagtagataatctcaaataaaccaatccaaaca 11514047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 34652097 - 34652047
Alignment:
Q  49 ttttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaaacagctta 34652047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 3070324 - 3070257
Alignment:
Q  32 tgttttcatataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||||||||||||| ||||||||||| || ||||||||||||  |||||||| | |||||| ||||    
T  3070324 tgttttcatataagctgttttcataagccatcttggagagcttctagaaataagataaaaacaactta 3070257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 16398115 - 16398174
Alignment:
Q  41 ataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagcttac 100  Q
    |||||||||||||||||| ||||||||||| |||  | ||||||| ||||||||||||||    
T  16398115 ataagctattttcataagttatgttggagaacttatgaaaataagctgaaaacagcttac 16398174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 33267605 - 33267535
Alignment:
Q  28 aaactgttttcatataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||||||||||||||||| |||| |||||||||| ||||||||||   ||| ||||||| ||||||||||    
T  33267605 aaactgttttcatataagctgtttttataagctatgctggagagctt-atgaagtaagttgtaaacagctta 33267535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 38767555 - 38767500
Alignment:
Q  123 acagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacag 178  Q
    ||||||||||||||||| ||| ||||||||||||||  |||| |||||||||||||    
T  38767555 acagtctcacaagtgcttatgccagtagataagctcgtataagccaatctaaacag 38767500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 1939393 - 1939343
Alignment:
Q  49 ttttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    ||||||||||||||  ||||||||||  |||||||||||||||||||||||    
T  1939393 ttttcataagctatactggagagcttatggaaataagttgaaaacagctta 1939343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 15370298 - 15370241
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacag 178  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||  ||||| ||||||    
T  15370298 aaacagtctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaacag 15370241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 3078709 - 3078649
Alignment:
Q  41 ataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagcttaca 101  Q
    ||||||| |||| ||||||||| |||||||||||| ||||||||| | |||||| ||||||    
T  3078709 ataagctgtttttataagctatcttggagagcttctggaaataagctaaaaacaacttaca 3078649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 22878193 - 22878249
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaaca 177  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||  ||||| |||||    
T  22878193 aaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaaaca 22878249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 16867739 - 16867798
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||| | |||||| ||||||| |||||||||||  |||||||||||||||||| ||||    
T  16867739 tataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaacaactta 16867798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18962156 - 18962106
Alignment:
Q  1 atttttataacaaaatataaaata--gtgaaactgttttcatataagctat 49  Q
    ||||||||||||||| ||||||||  || ||||||||||||||||||||||    
T  18962156 atttttataacaaaagataaaataaagttaaactgttttcatataagctat 18962106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 4350771 - 4350849
Alignment:
Q  107 tcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccctaa 185  Q
    ||||||| | ||| ||||| ||||  ||||||| ||| ||||||| |||||||||||| |||||| ||||| |||||||    
T  4350771 tcataagttctctcaaacaatctcttaagtgcttatgtcagtagagaagctcaaataagccaatccaaacaaaccctaa 4350849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 12464543 - 12464485
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctt 98  Q
    ||||||||||||||||||||||| ||||||| |||  | ||||||| |||||| |||||    
T  12464543 tataagctattttcataagctatcttggagaacttgtgaaaataagctgaaaaaagctt 12464485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 13866973 - 13867015
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaata 163  Q
    ||||||||||||||||| | ||| |||||||||||||||||||    
T  13866973 aaacagtctcacaagtgtttatggcagtagataagctcaaata 13867015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 6547939 - 6548044
Alignment:
Q  77 ggaaataagttgaaaacagcttaca-acgtgtcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaa 175  Q
    ||||||||| |||||||||||||   || || ||||||||  || |||||||||||||||| || |||  ||||||||||||  |||||  ||||| |||    
T  6547939 ggaaataagctgaaaacagcttatggacatggcataagctccctcaaacagtctcacaagttcttatgctagtagataagcttgaataagtcaatccaaa 6548038  T
Q  176 cagacc 181  Q
    ||||||    
T  6548039 cagacc 6548044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 16451110 - 16451175
Alignment:
Q  32 tgttttcatataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagct 97  Q
    |||||||||||||||| ||||| |||||||| ||||||| ||   | ||||||| |||||||||||    
T  16451110 tgttttcatataagctgttttcgtaagctatcttggagaactcgtgaaaataagctgaaaacagct 16451175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 40759259 - 40759312
Alignment:
Q  125 agtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacag 178  Q
    ||||||||||||||| ||| || |||||||||||||||||  ||||| ||||||    
T  40759259 agtctcacaagtgcttatgtcaatagataagctcaaataaggcaatccaaacag 40759312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 680503 - 680579
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta-caacgtgtcataagct 115  Q
    ||||||||||||||||||||||| ||| ||| |||  | ||||||| ||||||||| |||  ||| |||||||||||    
T  680503 tataagctattttcataagctatcttgaagaacttgtgaaaataagctgaaaacagtttataaacatgtcataagct 680579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 787427 - 787483
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaaca 177  Q
    ||||||| ||||||||||| ||| ||||||||| |||| ||||| |||||| |||||    
T  787427 aaacagtgtcacaagtgcttatgccagtagatatgctcgaataatccaatccaaaca 787483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 14209258 - 14209290
Alignment:
Q  28 aaactgttttcatataagctattttcataagct 60  Q
    |||||||||||||||||||||||| ||||||||    
T  14209258 aaactgttttcatataagctatttccataagct 14209290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 41817170 - 41817222
Alignment:
Q  42 taagctattttcataagctatgttggagagcttccggaaataagttgaaaaca 94  Q
    |||||||||||||||| ||||  ||||||||||  ||||||||| ||||||||    
T  41817170 taagctattttcataaactatcctggagagcttatggaaataagctgaaaaca 41817222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 43205308 - 43205364
Alignment:
Q  39 atataagctattttcataagctatgttggagagcttccggaaataagttgaaaacag 95  Q
    |||||| || ||||||||||||||   |||||||||  |||||||||||||||||||    
T  43205308 atataatctgttttcataagctatcacggagagcttatggaaataagttgaaaacag 43205364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 24974497 - 24974436
Alignment:
Q  29 aactgttttcatataagctattttcataagctatgttggagagcttccggaaataagttgaa 90  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| ||  ||||||||||||||    
T  24974497 aactgttttcatatatgctattttcataaactatgttggagagtttatggaaataagttgaa 24974436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 10016704 - 10016778
Alignment:
Q  107 tcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagacc 181  Q
    |||| |||| ||| ||| ||||||||||||| | ||| | ||||||||||||||||||||||||| |||||||||    
T  10016704 tcattagctctctgaaatagtctcacaagtgtttatgcctgtagataagctcaaataaaccaatccaaacagacc 10016778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 28005544 - 28005474
Alignment:
Q  108 cataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacag 178  Q
    ||||| || ||||||||||||| ||||||||| ||| |||||| ||||||||||| | | |||||||||||    
T  28005544 cataaactctcttaaacagtcttacaagtgcttatgccagtaggtaagctcaaatgagctaatctaaacag 28005474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 2455817 - 2455862
Alignment:
Q  47 tattttcataagctatgttggagagcttccggaaataagttgaaaa 92  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||    
T  2455817 tattttcataagctatcttggagagcttatggaaataagttgaaaa 2455862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 4420645 - 4420702
Alignment:
Q  42 taagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||| ||||||| |||||||| |||||||||||  ||||||||| |||||||||||||    
T  4420645 taagttattttcctaagctatcttggagagcttatggaaataagctgaaaacagctta 4420702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 7351647 - 7351586
Alignment:
Q  120 taaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagacc 181  Q
    |||||| ||||||||||||| ||| |||||||||| |||||||||  |||| ||||||||||    
T  7351647 taaacaatctcacaagtgcttatgtcagtagataaactcaaataagtcaatttaaacagacc 7351586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 35070537 - 35070478
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||||| ||||  ||||||||||| ||||||||  | |||||||||||||||||||||    
T  35070537 tataagctgtttttgtaagctatgtttgagagcttatgaaaataagttgaaaacagctta 35070478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 33080555 - 33080497
Alignment:
Q  119 ttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaaca 177  Q
    ||||||| ||||||||||||| ||| ||||| |||||||||||||| || ||| |||||    
T  33080555 ttaaacaatctcacaagtgcttatgccagtaaataagctcaaataagcctatccaaaca 33080497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 31686431 - 31686378
Alignment:
Q  42 taagctattttcataagctatgttggagagcttccggaaataagttgaaaacag 95  Q
    |||||| ||||||||||||||  |||||||||| |||| ||||| |||||||||    
T  31686431 taagctgttttcataagctatcctggagagcttacggacataagctgaaaacag 31686378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 34429708 - 34429635
Alignment:
Q  102 acgtgtcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaa 175  Q
    ||||||||||||||||   ||||| | || |||||| | |||  ||||||||||||||||||||||||| ||||    
T  34429708 acgtgtcataagcttttccaaacaatatctcaagtgtttatgctagtagataagctcaaataaaccaatttaaa 34429635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 430328 - 430292
Alignment:
Q  145 cagtagataagctcaaataaaccaatctaaacagacc 181  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  430328 cagtaaataagttcaaataaaccaatctaaacagacc 430292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 1432234 - 1432290
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaaca 177  Q
    ||||||||| |||| |||| |||  |||||||||||| ||||||||||||| |||||    
T  1432234 aaacagtctaacaattgcttatgtgagtagataagctaaaataaaccaatccaaaca 1432290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 2034521 - 2034457
Alignment:
Q  35 tttcatataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    ||||||||||||| |||||||||||||   || |||||||   |||||||| |||||||||||||    
T  2034521 tttcatataagcttttttcataagctaacatgtagagcttaatgaaataagctgaaaacagctta 2034457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 3738195 - 3738239
Alignment:
Q  120 taaacagtctcacaagtgctcatgacagtagataagctcaaataa 164  Q
    |||||||||||||||||||| |||  ||||||||| |||||||||    
T  3738195 taaacagtctcacaagtgcttatgctagtagataaactcaaataa 3738239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 6647387 - 6647463
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta-caacgtgtcataagct 115  Q
    ||||| || |||||||||||||| || ||||||||  | |||||||||||||||| ||||  ||| |||||||||||    
T  6647387 tataatctgttttcataagctatcttagagagcttatgaaaataagttgaaaacatcttatgaacatgtcataagct 6647463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 31624090 - 31624166
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta-caacgtgtcataagct 115  Q
    |||||||| |||||||| ||||| |||||||  ||  | |||||||||||||||||||||  ||| |||||||||||    
T  31624090 tataagctgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatgaacatgtcataagct 31624166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 33068566 - 33068518
Alignment:
Q  132 caagtgctcatgacagtagataagctcaaataaaccaatctaaacagac 180  Q
    |||||||| ||| ||||||||||| |||||||| |||||| ||||||||    
T  33068566 caagtgcttatgtcagtagataagttcaaataagccaatccaaacagac 33068518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 6875349 - 6875285
Alignment:
Q  28 aaactgttttcatataagctattttcataagctatgttggagagcttccggaaataagttgaaaa 92  Q
    ||||| |||||||||||| |||||||||| ||||| |||||||||||  ||||||||||||||||    
T  6875349 aaactattttcatataagttattttcatatgctatcttggagagcttaaggaaataagttgaaaa 6875285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 1889126 - 1889049
Alignment:
Q  105 tgtcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccc 182  Q
    ||||||||||||||  ||||||||||| ||||| | ||| |||||||||| |||||||||  | ||||||||||||||    
T  1889126 tgtcataagctttcccaaacagtctcaaaagtgtttatgccagtagataaactcaaataagtccatctaaacagaccc 1889049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 11494105 - 11494205
Alignment:
Q  1 atttttataacaaaatataaaata--gtgaaactgttttcatataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctt 98  Q
    ||||| ||||||||| |||| |||  || ||||| ||||||||||| ||||||||||||||||| ||| |||||||  | ||||||| ||||| ||||||    
T  11494105 attttcataacaaaagataacataaagtcaaacttttttcatataaactattttcataagctatcttgaagagcttatgaaaataagctgaaagcagctt 11494204  T
Q  99 a 99  Q
    |    
T  11494205 a 11494205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 14926992 - 14926901
Alignment:
Q  87 tgaaaacagcttaca-acgtgtcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaaca 177  Q
    ||||||||||||||| ||  |||| ||||| ||| ||||||||||||||||||| ||| ||||| ||||| ||||||||  ||||| |||||    
T  14926992 tgaaaacagcttacagacacgtcacaagctctctcaaacagtctcacaagtgcttatgccagtaaataagttcaaataagtcaatccaaaca 14926901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 16162841 - 16162912
Alignment:
Q  107 tcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacag 178  Q
    ||||||| ||||| ||||||||||||||||| | |||  ||||||||| ||||||||| |||||| ||||||    
T  16162841 tcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacag 16162912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 11569445 - 11569375
Alignment:
Q  108 cataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacag 178  Q
    |||||||| ||||||||||||||||||||| | ||| ||| ||||||||||  |||| |||||| ||||||    
T  11569445 cataagctctcttaaacagtctcacaagtggttatgccagcagataagctctgataagccaatcaaaacag 11569375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 24326113 - 24326167
Alignment:
Q  108 cataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaat 162  Q
    |||||||| ||  ||||||||||||||||||| ||| ||||||||||||||||||    
T  24326113 cataagctctcccaaacagtctcacaagtgcttatgccagtagataagctcaaat 24326167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 1664448 - 1664525
Alignment:
Q  105 tgtcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccc 182  Q
    ||||||||||| ||  ||||||||||||||||| | |||  ||||||||| |||||||||  | ||||||||||||||    
T  1664448 tgtcataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataagtccatctaaacagaccc 1664525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 1892215 - 1892138
Alignment:
Q  105 tgtcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccc 182  Q
    ||||||||||| |   ||||| ||||||||||| | ||||| |||||||| |||||||||  ||||||||||||||||    
T  1892215 tgtcataagctctgccaaacaatctcacaagtgtttatgacggtagataaactcaaataagtcaatctaaacagaccc 1892138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 5290606 - 5290651
Alignment:
Q  17 ataaaatagtgaaactgttttcatataagctattttcataagctat 62  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||    
T  5290606 ataaaatagtcaaactgttttcatgtaagctatattcataagctat 5290651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 2487983 - 2487927
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaaca 177  Q
    ||||||||||||||||||| ||| |||||||| | ||||||||| |||||| |||||    
T  2487983 aaacagtctcacaagtgcttatgtcagtagatgaactcaaataagccaatccaaaca 2487927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 3254317 - 3254361
Alignment:
Q  127 tctcacaagtgctcatgacagtagataagctcaaataaaccaatc 171  Q
    ||||||||||||| ||| |||||||||||||||| ||||||||||    
T  3254317 tctcacaagtgcttatgccagtagataagctcaagtaaaccaatc 3254361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 27028831 - 27028890
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||||| |||||||||||||| |||||||||||  | ||||||| |||||| ||||||    
T  27028831 tataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaatagctta 27028890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 28769409 - 28769350
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||||| |||||||||||||| |||||||| ||  ||||||||| |||||||| ||||    
T  28769409 tataagctgttttcataagctattttggagagtttatggaaataagctgaaaacaactta 28769350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 33714306 - 33714247
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    ||||||||||||||||||||||| | |||||||||    ||||||| |||||||||||||    
T  33714306 tataagctattttcataagctatctgggagagcttataaaaataagctgaaaacagctta 33714247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 778389 - 778451
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagcttacaa 102  Q
    |||||||| |||||||||||  |||||||||||||  | || ||||||||||||| |||||||    
T  778389 tataagctgttttcataagcattgttggagagcttatgaaagtaagttgaaaacaacttacaa 778451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 14929199 - 14929153
Alignment:
Q  49 ttttcataagctatgttggagagcttccggaaataagttgaaaacag 95  Q
    |||||||||||||||||| |||||||  ||||||||| |||||||||    
T  14929199 ttttcataagctatgttgcagagcttttggaaataagctgaaaacag 14929153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 41336706 - 41336656
Alignment:
Q  49 ttttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||||||||||| | ||||||||| |||||||||| |||||||| ||||    
T  41336706 ttttcataagctatctaggagagcttgcggaaataagctgaaaacaactta 41336656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 44236797 - 44236755
Alignment:
Q  122 aacagtctcacaagtgctcatgacagtagataagctcaaataa 164  Q
    |||||||||||||||||| ||| |||||||||| |||||||||    
T  44236797 aacagtctcacaagtgcttatgccagtagataaactcaaataa 44236755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 3953897 - 3953945
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaa 169  Q
    ||||||| ||||||||||| ||| ||||||||| |||||||||| ||||    
T  3953897 aaacagtttcacaagtgcttatgccagtagataggctcaaataagccaa 3953945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 6864529 - 6864477
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaa 92  Q
    |||||| | |||||||||||||| |||||||||||  ||||||||| ||||||    
T  6864529 tataagttgttttcataagctattttggagagcttgaggaaataagctgaaaa 6864477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 7714337 - 7714393
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaaca 177  Q
    ||||||||||||||||| | |||||| || ||||||||||||||  ||||| |||||    
T  7714337 aaacagtctcacaagtgtttatgacattatataagctcaaataagtcaatccaaaca 7714393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 10075541 - 10075485
Alignment:
Q  108 cataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataa 164  Q
    |||||||| |||||||||||||| |||||  | ||| |||||||||| |||||||||    
T  10075541 cataagctctcttaaacagtctcgcaagtatttatgccagtagataaactcaaataa 10075485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 41589705 - 41589737
Alignment:
Q  145 cagtagataagctcaaataaaccaatctaaaca 177  Q
    ||||||| |||||||||||||||||||||||||    
T  41589705 cagtagacaagctcaaataaaccaatctaaaca 41589737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 42215145 - 42215093
Alignment:
Q  47 tattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||||||||||||| |||||||||||  | ||||||| |||||||| ||||    
T  42215145 tattttcataagctatcttggagagcttatgtaaataagctgaaaacaactta 42215093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 25925767 - 25925867
Alignment:
Q  65 tggagagcttccggaaataagttgaaaacagcttac-aacgtgtcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaata 163  Q
    ||||||||||  | |||||||||||||||||||||  ||| ||||||||| | ||| ||||||| | ||||||||| ||| ||||||||||| |||||||    
T  25925767 tggagagcttatgaaaataagttgaaaacagcttatgaacatgtcataagttctctaaaacagtgttacaagtgcttatgccagtagataagttcaaata 25925866  T
Q  164 a 164  Q
    |    
T  25925867 a 25925867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 27796000 - 27795936
Alignment:
Q  109 ataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatcta 173  Q
    ||||||| ||||||||||| ||||||||||| ||| |||||||||||||||||||| | ||||||    
T  27796000 ataagctctcttaaacagtttcacaagtgcttatgccagtagataagctcaaataagctaatcta 27795936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 22667485 - 22667548
Alignment:
Q  108 cataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatc 171  Q
    ||||| || ||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||||    
T  22667485 cataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaatc 22667548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 22724124 - 22724187
Alignment:
Q  108 cataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatc 171  Q
    ||||| || ||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||||    
T  22724124 cataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaatc 22724187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 20669131 - 20669231
Alignment:
Q  1 atttttataacaaaatataaaata--gtgaaactgttttcatataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctt 98  Q
    |||| |||||||| ||||| ||||  || ||| |||| ||||||||||| |||||||||||||| |||||||||||  | |||||||  |||||||||||    
T  20669131 atttctataacaagatatacaataaagtcaaaatgttgtcatataagctgttttcataagctatcttggagagcttatgtaaataagcggaaaacagctt 20669230  T
Q  99 a 99  Q
    |    
T  20669231 a 20669231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 20210916 - 20210840
Alignment:
Q  108 cataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagacccta 184  Q
    |||||| | ||| ||||||||||||||||| | ||| |||||||||| |||||||||| ||||| ||||| ||||||    
T  20210916 cataagatctctcaaacagtctcacaagtggttatgtcagtagataacctcaaataaatcaatccaaacatacccta 20210840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 25459605 - 25459541
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccctaa 185  Q
    ||||| ||||||||||||| |||  ||| |||||||||||||||| ||||| |||||||||||||    
T  25459605 aaacaatctcacaagtgcttatgctagttgataagctcaaataaatcaatccaaacagaccctaa 25459541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 41033231 - 41033175
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaaca 177  Q
    |||||||||||| ||| || ||| |||||||||| ||||||||||||||||||||||    
T  41033231 aaacagtctcacgagtccttatgtcagtagataaactcaaataaaccaatctaaaca 41033175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 44237513 - 44237569
Alignment:
Q  122 aacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacag 178  Q
    |||||| ||||||||||| ||| |||||||||| ||||||||||||||| |||||||    
T  44237513 aacagtttcacaagtgcttatgtcagtagataaactcaaataaaccaatttaaacag 44237569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 44014787 - 44014716
Alignment:
Q  107 tcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacag 178  Q
    ||||||| ||||| ||||||||||||||||| | |||  ||||||||| ||||||||| |||||| ||||||    
T  44014787 tcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacag 44014716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 34363990 - 34364043
Alignment:
Q  32 tgttttcatataagctattttcataagctatgttggagagcttccggaaataag 85  Q
    ||||||||||||||||||||||||||||||| | |||||| ||  |||||||||    
T  34363990 tgttttcatataagctattttcataagctatctcggagagtttgtggaaataag 34364043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 21872270 - 21872227
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataa 164  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||    
T  21872270 aaacagtctcacaagtgcttatgtcagtagataagatcaaataa 21872227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 39980811 - 39980889
Alignment:
Q  107 tcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccctaat 186  Q
    ||||||| | ||||||||||||||||||   || |||  |||||||||||||||| || |||||| ||||||||||||||    
T  39980811 tcataagttctcttaaacagtctcacaaaa-cttatgctagtagataagctcaaacaagccaatccaaacagaccctaat 39980889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 2825113 - 2825181
Alignment:
Q  7 ataacaaaatataaaata--gtgaaactgttttcatataagctattttcataagctatgttggagagctt 74  Q
    ||||||||| ||||||||  || |||| |||||||| |||| |||||||||||||||| |||||||||||    
T  2825113 ataacaaaagataaaataaagtaaaac-gttttcatgtaagttattttcataagctatcttggagagctt 2825181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 23793542 - 23793657
Alignment:
Q  3 ttttataacaaaatataaaata--gtgaaactgttttcatataagctatt---ttcataagctatgttggagagcttccggaaataagttgaaaacagct 97  Q
    ||||||||||||| ||||||||  || ||| || |||||||||||| |||   |||||||||||| ||||| |||||   |||||||| |||||||| ||    
T  23793542 ttttataacaaaagataaaataaagtcaaaatgatttcatataagcaattggtttcataagctatcttggaaagcttatagaaataagctgaaaacaact 23793641  T
Q  98 tacaacgtgtcataag 113  Q
    || ||  |||||||||    
T  23793642 tataagttgtcataag 23793657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 27294432 - 27294490
Alignment:
Q  112 agctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaat 170  Q
    |||| ||| ||||||||||||||||||| |||||| ||||||| ||||| ||| |||||    
T  27294432 agctctctcaaacagtctcacaagtgcttatgacaatagataaactcaagtaagccaat 27294490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 32663759 - 32663797
Alignment:
Q  147 gtagataagctcaaataaaccaatctaaacagaccctaa 185  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  32663759 gtagataagctcaaataagccaatccaaacagaccctaa 32663797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 37273143 - 37273193
Alignment:
Q  49 ttttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||||||||||| ||||||| |||  |||||||||||||||||| ||||    
T  37273143 ttttcataagctatcttggagaacttatggaaataagttgaaaacaactta 37273193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 42530342 - 42530392
Alignment:
Q  108 cataagctttcttaaacagtctcacaagtgctcatgacagtagataagctc 158  Q
    |||||||||||| ||||||||||||||||||| |||  ||||| |||||||    
T  42530342 cataagctttctgaaacagtctcacaagtgcttatgctagtagttaagctc 42530392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 43948664 - 43948714
Alignment:
Q  49 ttttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||||||||||| ||||| |||||  ||||||||| |||||||||||||    
T  43948664 ttttcataagctatcttggaaagcttgaggaaataagctgaaaacagctta 43948714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 32582747 - 32582796
Alignment:
Q  43 aagctattttcataagctatgttggagagcttccggaaataagttgaaaa 92  Q
    ||||| |||||||||||||| ||||||| |||  ||||||||||||||||    
T  32582747 aagctgttttcataagctattttggagaacttatggaaataagttgaaaa 32582796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 41057250 - 41057299
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaat 170  Q
    ||||||||||||||||||| |||   |||||||||||||||||| |||||    
T  41057250 aaacagtctcacaagtgcttatgcatgtagataagctcaaataagccaat 41057299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 902045 - 902081
Alignment:
Q  148 tagataagctcaaataaaccaatctaaacagacccta 184  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  902045 tagataagctcaaataaagcaatccaaacagacccta 902081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 22667413 - 22667449
Alignment:
Q  49 ttttcataagctatgttggagagcttccggaaataag 85  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  22667413 ttttcataagctatcttggagagcttacggaaataag 22667449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 22724052 - 22724088
Alignment:
Q  49 ttttcataagctatgttggagagcttccggaaataag 85  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  22724052 ttttcataagctatcttggagagcttacggaaataag 22724088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 26492918 - 26492969
Alignment:
Q  13 aaatataaaata--gtgaaactgttttcatataagctattttcataagctat 62  Q
    ||||||||||||  || |||||||||||| ||||| ||||||||||||||||    
T  26492918 aaatataaaataaagtcaaactgttttcacataagttattttcataagctat 26492969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 41644516 - 41644456
Alignment:
Q  39 atataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    ||||||||| ||||||||||||||  | |||| |||  ||||||||| |||||||||||||    
T  41644516 atataagctgttttcataagctatcgtagagatcttaaggaaataagctgaaaacagctta 41644456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 24460376 - 24460312
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccctaa 185  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||  ||||| |||||| ||||||    
T  24460376 aaacagtctcacaagtgctcatgtcagtagataagttcaaataagtcaatccaaacaggccctaa 24460312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 23895288 - 23895389
Alignment:
Q  1 atttttataacaaaatataaaatag--tgaaactgttttcatataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctt 98  Q
    |||| |||||||||| ||||||||   | |||||||| ||||||| |||||||| |||| |||| |||||||||||  ||||||||||| |||| |||||    
T  23895288 atttctataacaaaagataaaataaattcaaactgttctcatatatgctatttttataaactatcttggagagcttgtggaaataagttaaaaatagctt 23895387  T
Q  99 ac 100  Q
    ||    
T  23895388 ac 23895389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 28837332 - 28837278
Alignment:
Q  117 tcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatc 171  Q
    |||||||||||||| |||||||| ||| |||||||||||||||||||| ||||||    
T  28837332 tcttaaacagtctctcaagtgcttatgtcagtagataagctcaaataagccaatc 28837278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 32958739 - 32958789
Alignment:
Q  128 ctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacag 178  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  32958739 ctcacaagtgcttatgacagtagataagctcaaataagtcaatctaaacag 32958789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 2294911 - 2294970
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||||||||||||||| |||| ||||||| ||| || ||||||| |||||||||||||    
T  2294911 tataagctattttcataaactatcttggagaacttacgaaaataaggtgaaaacagctta 2294970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 36070262 - 36070332
Alignment:
Q  107 tcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaaca 177  Q
    ||||||| | || |||||||||||||||||||| ||| ||| ||||||  ||||||||||||||| |||||    
T  36070262 tcataagttctcctaaacagtctcacaagtgcttatgccagaagataatatcaaataaaccaatccaaaca 36070332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 26679436 - 26679505
Alignment:
Q  108 cataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaaca 177  Q
    |||||||| ||  |||| |||| || |||||| ||||||||||||||||||||||||| ||||| |||||    
T  26679436 cataagctctcgcaaactgtcttaccagtgctaatgacagtagataagctcaaataaatcaatccaaaca 26679505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 4548722 - 4548782
Alignment:
Q  41 ataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagcttaca 101  Q
    ||||||| |||||||||||||| |||||||||||| | ||||||| | |||||| ||||||    
T  4548722 ataagctgttttcataagctatcttggagagcttcagaaaataagctaaaaacaacttaca 4548782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 6292493 - 6292569
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta-caacgtgtcataagct 115  Q
    |||||||||||||| ||| |||| |||||||||||  | ||||||| |||||||||||||  ||| |||||||||||    
T  6292493 tataagctattttcgtaaactattttggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagct 6292569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 21002250 - 21002306
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaaca 177  Q
    |||||||||||||||| || |||  ||||||||||||||||||| |||||| |||||    
T  21002250 aaacagtctcacaagttcttatgcaagtagataagctcaaataagccaatccaaaca 21002306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 35017677 - 35017733
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaaca 177  Q
    ||||| ||||||||||| | ||| || ||||||||||||||||| ||||||||||||    
T  35017677 aaacaatctcacaagtgtttatgccaatagataagctcaaataagccaatctaaaca 35017733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 11217989 - 11217946
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataa 164  Q
    |||| |||||||||||||||||| |||||||| |||||||||||    
T  11217989 aaaccgtctcacaagtgctcatgtcagtagattagctcaaataa 11217946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 14630036 - 14629977
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    ||||||||||||||||||||||| |||||||  ||  ||||||||| |||||||| ||||    
T  14630036 tataagctattttcataagctatcttggagactttatggaaataagctgaaaacaactta 14629977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 31517715 - 31517672
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataa 164  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||    
T  31517715 aaacagtctcacaagtgcttatgccagtaaataagctcaaataa 31517672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 9507243 - 9507369
Alignment:
Q  39 atataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagcttacaa-cgtgtcataagctttcttaaacagtctcacaagtg 137  Q
    ||||||||| ||||  | |||||| |||||||  ||  ||||||||| | |||| ||||||| | | ||||||||||| ||  |||||||||||||| ||    
T  9507243 atataagcttttttattcagctatattggagattttatggaaataagcttaaaatagcttacgagcatgtcataagctctcccaaacagtctcacaaatg 9507342  T
Q  138 ctcatgacagtagataagctcaaataa 164  Q
    |  |||  |||||||||||||||||||    
T  9507343 cctatgctagtagataagctcaaataa 9507369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 14737701 - 14737651
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatc 171  Q
    ||||||||||||||||||| ||   |||| |||||||||||||||||||||    
T  14737701 aaacagtctcacaagtgcttattctagtaaataagctcaaataaaccaatc 14737651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 18327109 - 18327071
Alignment:
Q  133 aagtgctcatgacagtagataagctcaaataaaccaatc 171  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  18327109 aagtgcttatgacagtagataagctcaaataagccaatc 18327071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 47020516 - 47020562
Alignment:
Q  49 ttttcataagctatgttggagagcttccggaaataagttgaaaacag 95  Q
    |||||||||||||| || |||||||| ||||||||||||| ||||||    
T  47020516 ttttcataagctatcttagagagcttacggaaataagttgtaaacag 47020562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 51929451 - 51929397
Alignment:
Q  107 tcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaa 161  Q
    ||||||| | ||||||||||| ||||| ||||| ||| |||||||||||||||||    
T  51929451 tcataagttctcttaaacagtgtcacaggtgcttatgtcagtagataagctcaaa 51929397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 36495436 - 36495403
Alignment:
Q  151 ataagctcaaataaaccaatctaaacagacccta 184  Q
    ||||||||||||||||||||| ||||||||||||    
T  36495436 ataagctcaaataaaccaatccaaacagacccta 36495403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 37272582 - 37272529
Alignment:
Q  108 cataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaa 161  Q
    |||||||| ||| ||||| ||||||||||||| | | |||||||||||||||||    
T  37272582 cataagctctctcaaacaatctcacaagtgcttaagccagtagataagctcaaa 37272529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 2522596 - 2522683
Alignment:
Q  9 aacaaaatataaaata--gtgaaactgttttcatataagctattttcataagctatgttggagagcttccggaaataagttgaaaaca 94  Q
    ||||||| ||||||||  || |||||| ||| ||||||||| ||||||||| ||||  ||||||  ||  ||||||||||||||||||    
T  2522596 aacaaaagataaaataaagttaaactgattttatataagctgttttcataaactattctggagaatttatggaaataagttgaaaaca 2522683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 4445714 - 4445766
Alignment:
Q  46 ctattttcataagctatgttggagagcttccggaaataagttgaaaacagctt 98  Q
    |||||||||||||||   |||||||||||  | ||||||||||||||||||||    
T  4445714 ctattttcataagctgacttggagagcttgtgaaaataagttgaaaacagctt 4445766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 33976273 - 33976333
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagacc 181  Q
    |||| |||||||||||||| ||| || || ||||||||||||||  ||||| |||||||||    
T  33976273 aaactgtctcacaagtgctgatgtcattaaataagctcaaataagtcaatccaaacagacc 33976333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 34668758 - 34668814
Alignment:
Q  128 ctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagacccta 184  Q
    |||||||||||||||| ||||| |||| ||||||||| |||||| ||| || |||||    
T  34668758 ctcacaagtgctcatgtcagtacataaactcaaataagccaatccaaataggcccta 34668814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 41516169 - 41516137
Alignment:
Q  28 aaactgttttcatataagctattttcataagct 60  Q
    ||||| |||||||||||||||||||||||||||    
T  41516169 aaactattttcatataagctattttcataagct 41516137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 43371880 - 43371836
Alignment:
Q  107 tcataagctttcttaaacagtctcacaagtgctcatgacagtaga 151  Q
    ||||||||| ||| ||||||||||||||||||| ||| |||||||    
T  43371880 tcataagctctctcaaacagtctcacaagtgcttatgccagtaga 43371836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 47970378 - 47970440
Alignment:
Q  108 cataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaat 170  Q
    |||||||||||   |||||| ||||||||||| ||| ||||||||||||||||||||||||||    
T  47970378 cataagctttccataacagtttcacaagtgcttatgtcagtagataagctcaaataaaccaat 47970440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 163
Target Start/End: Complemental strand, 18628613 - 18628486
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctt-acaacgtgt---cataagctttcttaaacagtctcacaag 135  Q
    ||||| || |||||||||| ||| |||||||||||  ||||||||| |||||||| ||| | ||  |||   |||||||| ||  |||||||||||||||    
T  18628613 tataaactgttttcataagttatcttggagagcttatggaaataagctgaaaacaacttcataagttgttttcataagctctcccaaacagtctcacaag 18628514  T
Q  136 tgctcatgacagtagataagctcaaata 163  Q
    || | ||| |||||||||||||||||||    
T  18628513 tgtttatgtcagtagataagctcaaata 18628486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 11191590 - 11191649
Alignment:
Q  119 ttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacag 178  Q
    ||||||||||||||||||||| ||||||  | |||| ||||||||| |||||||||||||    
T  11191590 ttaaacagtctcacaagtgcttatgacaagatataaactcaaataagccaatctaaacag 11191649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 42641614 - 42641552
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccct 183  Q
    ||||||| ||||||||| ||| | |||||||||||||||||||| ||||||| || |||||||    
T  42641614 aaacagtatcacaagtgttcacgccagtagataagctcaaataagccaatctgaatagaccct 42641552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 4691930 - 4691987
Alignment:
Q  108 cataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaa 165  Q
    |||||| ||||| ||| ||||||||||||| |  ||||||||||||||||||||||||    
T  4691930 cataagttttctcaaatagtctcacaagtgattgtgacagtagataagctcaaataaa 4691987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 27721711 - 27721776
Alignment:
Q  34 ttttcatataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||| ||||||||| |||||||||| |||  |||||||||| || ||||||| |||||||||||||    
T  27721711 tttttatataagctgttttcataagttatcctggagagcttgcgaaaataagctgaaaacagctta 27721776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 47800582 - 47800682
Alignment:
Q  1 atttttataacaaaatataaaata--gtgaaactgttttcatataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctt 98  Q
    |||| |||||||||| ||||||||  || ||| ||||||  |||||||| |||||||||||||| ||| |||||||  | ||||||| ||||||| ||||    
T  47800582 atttctataacaaaagataaaataaagttaaaatgtttttgtataagctgttttcataagctatcttgaagagcttatgaaaataagctgaaaaccgctt 47800681  T
Q  99 a 99  Q
    |    
T  47800682 a 47800682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 50298610 - 50298659
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaat 170  Q
    ||||||||||||||||||| ||| ||||||||||||| ||||||| ||||    
T  50298610 aaacagtctcacaagtgcttatgtcagtagataagctaaaataaatcaat 50298659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 17975438 - 17975378
Alignment:
Q  41 ataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagcttaca 101  Q
    ||||||| |||| ||||||||| |||||||||||| ||||||||| | |||||| ||||||    
T  17975438 ataagctgtttttataagctatcttggagagcttctggaaataagctaaaaacaacttaca 17975378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 44320030 - 44320106
Alignment:
Q  107 tcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccct 183  Q
    ||||||||| ||  |||||||||||||| || | ||| || ||| |||||||||||||||||||| |||| ||||||    
T  44320030 tcataagctctcccaaacagtctcacaattgtttatgccaataggtaagctcaaataaaccaatccaaaccgaccct 44320106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 6364149 - 6364208
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    ||||||| |||||||||||||||  |||||| ||| || ||||||| |||||||||||||    
T  6364149 tataagcaattttcataagctataatggagaacttacgaaaataagctgaaaacagctta 6364208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 25896867 - 25896922
Alignment:
Q  109 ataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataa 164  Q
    ||||||| || |||||||||||||||||||| |||  ||||||||| |||||||||    
T  25896867 ataagctctcctaaacagtctcacaagtgctaatgctagtagataaactcaaataa 25896922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 35743319 - 35743418
Alignment:
Q  77 ggaaataagttgaaaacagcttacaa-cgtgtcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaa 175  Q
    |||||||||||| ||||| |||| || | ||||||||||| |  ||||||||||||||| |||| ||   ||||||||| |||||||||  |||||||||    
T  35743319 ggaaataagttggaaacaacttataaacatgtcataagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtcaatctaaa 35743418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 46187888 - 46187841
Alignment:
Q  117 tcttaaacagtctcacaagtgctcatgacagtagataagctcaaataa 164  Q
    ||||||||||||||| ||||| | ||| ||||||||||||||||||||    
T  46187888 tcttaaacagtctcataagtgtttatgccagtagataagctcaaataa 46187841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 46797097 - 46797152
Alignment:
Q  109 ataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataa 164  Q
    |||||||||| |||||||||||||||||||| ||   |||| ||||||||||||||    
T  46797097 ataagctttcataaacagtctcacaagtgcttatacaagtaaataagctcaaataa 46797152  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 52333697 - 52333756
Alignment:
Q  125 agtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagacccta 184  Q
    ||||||||||||||| | | ||||| |||||||||||||| |||||| |||||| |||||    
T  52333697 agtctcacaagtgcttaggtcagtaaataagctcaaataagccaatcgaaacaggcccta 52333756  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 54277297 - 54277234
Alignment:
Q  122 aacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccctaa 185  Q
    |||||||||| ||||| | ||| || |||||||| ||||||||  |||||||||||||||||||    
T  54277297 aacagtctcataagtgtttatgtcactagataagttcaaataagtcaatctaaacagaccctaa 54277234  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 2977962 - 2977908
Alignment:
Q  110 taagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataa 164  Q
    |||||| ||||||||||||||||| ||||| ||| || ||||| |||||||||||    
T  2977962 taagctctcttaaacagtctcacacgtgcttatgccactagatcagctcaaataa 2977908  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 7368029 - 7367963
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccctaatt 187  Q
    ||||||||||||||| | | ||| | |||||||| |||||||||  ||||| |||||||||||||||    
T  7368029 aaacagtctcacaagcgtttatgcctgtagataaactcaaataagtcaatccaaacagaccctaatt 7367963  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 14011247 - 14011293
Alignment:
Q  53 cataagctatgttggagagcttccggaaataagttgaaaacagctta 99  Q
    |||||||||| |||||||||||  ||||||||| |||||||||||||    
T  14011247 cataagctatcttggagagcttatggaaataagctgaaaacagctta 14011293  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 35571581 - 35571543
Alignment:
Q  146 agtagataagctcaaataaaccaatctaaacagacccta 184  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  35571581 agtagataagctcaaataagccaatccaaacagacccta 35571543  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 23967071 - 23967011
Alignment:
Q  41 ataagctattttcataagctatgttggag--agcttccggaaataagttgaaaacagctta 99  Q
    |||||||||||||||||||||| ||||||  | ||| | ||||||||||||||||| ||||    
T  23967071 ataagctattttcataagctatcttggagataacttacagaaataagttgaaaacaactta 23967011  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 46859972 - 46860056
Alignment:
Q  82 taagttgaaaacagcttac--aacgtgtcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataa 164  Q
    |||| |||||||| |||||  ||| ||||||||||| ||| ||||||| ||||||||||| |||  | |||||||| ||||||||    
T  46859972 taagctgaaaacaacttacctaacatgtcataagctctctcaaacagtttcacaagtgcttatgtgaatagataagttcaaataa 46860056  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 2996654 - 2996722
Alignment:
Q  107 tcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaa 175  Q
    ||||||||| ||| ||||||||||| ||||||| ||| || || ||||| |||||||| | ||||||||    
T  2996654 tcataagctctctcaaacagtctcaaaagtgcttatgtcaataaataagttcaaataagctaatctaaa 2996722  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 18512486 - 18512430
Alignment:
Q  125 agtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagacc 181  Q
    ||||||||||||| | ||| ||||||||||||||||||||   |||| |||||||||    
T  18512486 agtctcacaagtgtttatgtcagtagataagctcaaataagttaatcgaaacagacc 18512430  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 20656143 - 20656183
Alignment:
Q  130 cacaagtgctcatgacagtagataagctcaaataaaccaat 170  Q
    ||||||| || ||||||||||||||||||||||||| ||||    
T  20656143 cacaagtacttatgacagtagataagctcaaataaatcaat 20656183  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 20935975 - 20935943
Alignment:
Q  145 cagtagataagctcaaataaaccaatctaaaca 177  Q
    ||||||||||||||||||||||||||| |||||    
T  20935975 cagtagataagctcaaataaaccaatccaaaca 20935943  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 22523775 - 22523839
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccctaa 185  Q
    |||||||||||||||| || ||| |||||||||| ||| |||||| ||||  ||||| |||||||    
T  22523775 aaacagtctcacaagtacttatgtcagtagataaactcgaataaatcaatagaaacaaaccctaa 22523839  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 139
Target Start/End: Original strand, 42121488 - 42121587
Alignment:
Q  40 tataagctattttcataagctatgttggagagcttccggaaataagttgaaaacagcttac-aacgtgtcataagctttcttaaacagtctcacaagtgc 138  Q
    |||||| | ||||||| |||||| ||||||| |||  ||||||||| ||||| |||||||  ||| ||||||||| | ||| |||||||||||||| |||    
T  42121488 tataagttgttttcatgagctatcttggagaacttgtggaaataagctgaaa-cagcttatgaacatgtcataagttctctcaaacagtctcacaaatgc 42121586  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 42641473 - 42641409
Alignment:
Q  121 aaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccctaa 185  Q
    ||||||| ||| ||||| | |||||||||| ||||| |||||||||||||  ||||||| |||||    
T  42641473 aaacagtttcaaaagtgattatgacagtagttaagcacaaataaaccaattcaaacagatcctaa 42641409  T

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Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 6889 - 6966
Alignment:
Q  105 tgtcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagaccc 182  Q
    ||||||||||| ||  ||||||||||||||||| | |||  ||||||||| |||||||||  | ||||||||||||||    
T  6889 tgtcataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataagtccatctaaacagaccc 6966  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 21396 - 21325
Alignment:
Q  1 atttttataacaaaatataaaata--gtgaaactgttttcatataagctattttcataagctatgttggaga 70  Q
    |||||||||  |||| ||||||||  || ||| ||||||| |||||||| |||||||||||||| |||||||    
T  21396 atttttataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagctatattggaga 21325  T

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