View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20710_low_3 (Length: 531)
Name: NF20710_low_3
Description: NF20710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20710_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 38370508 - 38369984
Alignment:
| Q |
1 |
tttatgtagtatggattttattggtgagagctgtaactcagcatattctgagggtgaccatgaaccaccaaataagaagcttaaaaggtttaatgtttgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38370508 |
tttatgtagtatggattttattggtgagagctgtaactcagcatattctgatggtgatcatgaaccaccaaataagaagcttaaaaggtttaatgtttgg |
38370409 |
T |
|
| Q |
101 |
aactactttgttaaaattgaagcagatggtaaagaactgtgtgaatgtaaaacttgtgggaaacagtttatttctggaaggacaggtatatctcatctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38370408 |
aactactttgttaaaattgaagcagatggtaaagaactgtgtgaatgtaaaacttgtgggaaacagtttatttctggaaggacaggtatatctcatctaa |
38370309 |
T |
|
| Q |
201 |
accaagtccaacatattaccaaatgtcctttgattatgaaatctcgtattgccaaacatttcaagctcaacaaaattgatcataggatggttcgtgattc |
300 |
Q |
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| T |
38370308 |
accaagtccaacatattaccaaatgtcctttgattatgaaatctcgtattgccaagcatttcaagctcaacaaaattgatcataggatggttcgtgattc |
38370209 |
T |
|
| Q |
301 |
ggttactcaaatgaatataaaaagttacattccatttcagtt-------tgggatgaatttagggcatttaccaaatttgcttcttttaatgaggctcaa |
393 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38370208 |
ggttactcaaatgactataaaaagttacattccatttcagtttgctgagtgggatgaatttagggcatttaccaaatttgcttcttttaatgaggctcga |
38370109 |
T |
|
| Q |
394 |
tctctttctagagataatgttgtcgctgatgtgatgaaagtttacttgcttgagaaggataaattgaaaaaacagctggctgcagttaagggtggagtgt |
493 |
Q |
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| T |
38370108 |
tctctttctagagataatgttgtcgctgatgtgatgaaagtttacttgcttgaaaaggataaattgaaaaaacagctggctgcagttaagggtggagtgt |
38370009 |
T |
|
| Q |
494 |
gtttgagctttcattgttggacttc |
518 |
Q |
| |
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| T |
38370008 |
gtttgagctttcattgttggacttc |
38369984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 62 - 518
Target Start/End: Complemental strand, 38380337 - 38379877
Alignment:
| Q |
62 |
gaaccaccaaataagaagcttaaaaggtttaatgtttggaactactttgttaaaattgaagcagatggtaaagaactgtgtgaatgtaaaacttgtggga |
161 |
Q |
| |
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||||| ||||| || | ||||||||||||||||||||||||||||||||| ||| || | |||||| |||||| |||||||||||| |||||||||| |
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| T |
38380337 |
gaacctccaaagaaaaggcttaaaaggtttaatgtttggaactactttgtcaaagttcataaagatggaaaagaaatgtgtgaatgtatgacttgtggga |
38380238 |
T |
|
| Q |
162 |
aacagtttatttctg---gaaggacaggtatatctcatctaaaccaagtccaacatattaccaaatgtcctttgattatgaaatctcgtattgccaaaca |
258 |
Q |
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| ||||| || || ||||| |||||| ||||||||||||| | |||||| || |||||||||| |||||||||||||||||||| | || |
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| T |
38380237 |
gagtgtttacttgtgatggaaggtcaggtaactctcatctaaaccta------catattcccgtatgtcctttggttatgaaatctcgtattgccgagca |
38380144 |
T |
|
| Q |
259 |
tttcaagctcaacaaaattgatcataggatggttcgtgattcggttactcaaatgaatataaaaagttacattccatttcagtttg-------ggatgaa |
351 |
Q |
| |
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|||||||||||| || ||||||||||||||||||||||| || |||||||||||| |||||||| | | ||||||||| || || || |||| |
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| T |
38380143 |
tttcaagctcaaaaagattgatcataggatggttcgtgaatcaattactcaaatgactataaaaaatcatcttccatttcggtctgttgagtggggtgaa |
38380044 |
T |
|
| Q |
352 |
tttagggcatttaccaaatttgcttcttttaatgaggctcaatctctttctagagataatgttgtcgctgatgtgatgaaagtttacttgcttgagaagg |
451 |
Q |
| |
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||||||| ||| || ||||||| ||| || ||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||| || | |
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| T |
38380043 |
tttagggaattcactaaatttgtttcgttcaatgaggctcaatttctttctagatatggtgttgctaatgatgtgatgaaagtttacttgcttgaaaaag |
38379944 |
T |
|
| Q |
452 |
ataaattgaaaaaacagctggctgcagttaagggtggagtgtgtttgagctttcattgttggacttc |
518 |
Q |
| |
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| ||||||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||| |
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| T |
38379943 |
agaaattgaaaaaacagcttgctgcaattgagggtggagtgtgtttgagctttcgttgttggacttc |
38379877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 32 - 518
Target Start/End: Complemental strand, 38375179 - 38374713
Alignment:
| Q |
32 |
tgtaactcagcatattctg---agggtgaccatgaaccaccaaataagaagcttaaaaggtttaatgtttggaactactttgttaaaattgaagcagatg |
128 |
Q |
| |
|
||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | | ||| |
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| T |
38375179 |
tgtaactcagcatattctggtgacggtgattctgaaccaccaaaaaagaagcttaaaaggtttaatgtttggaactactttgtcaaaattaataaaaatg |
38375080 |
T |
|
| Q |
129 |
gtaaagaactgtgtgaatgtaaaacttgtgggaaacagtttatttctggaaggacaggtatatctcatctaaaccaagtccaacatattaccaaatgtcc |
228 |
Q |
| |
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| |||||| ||||||| |||| |||||||| ||||| ||||||| |||||||||| ||||||||||| |||||||||| |
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| T |
38375079 |
gaaaagaaatgtgtgagtgtatgacttgtggc---------------ggaagatcaggtatctctcatctaa------tccaacatattcccaaatgtcc |
38375001 |
T |
|
| Q |
229 |
tttgattatgaaatctcgtattgccaaacatttcaagctcaacaaaattgatcataggatggttcgtgattcggttactcaaatgaatataaaaagttac |
328 |
Q |
| |
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|||||||||||||||| ||||||| | | ||| ||||||| ||||| ||||||||||| ||| | |||||||||| ||||||| | |
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| T |
38375000 |
tttgattatgaaatcttgtattgctgagtacttcgagctcaa---------tcataacatggttcgtgaatcgatgactcaaatgactataaaacatcgt |
38374910 |
T |
|
| Q |
329 |
attccatttcagtttg-------ggatgaatttagggcatttaccaaatttgcttcttttaatgaggctcaatctctttctagagataatgttgtcgctg |
421 |
Q |
| |
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|||||||||| |||| |||| ||||||||||||| |||||||||| |||| |||||||||||||| ||| || ||| || | ||| | || |
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| T |
38374909 |
cttccatttcactttgttgagtgggataaatttagggcattcaccaaatttgtttctgataatgaggctcaatttctatccagatatggtcttgctgatg |
38374810 |
T |
|
| Q |
422 |
atgtgatgaaagtttacttgcttgagaaggataaattgaaaaaacagctggctgcagttaagggtggagtgtgtttgagctttcattgttggacttc |
518 |
Q |
| |
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||||||||||||||||||||||| | || |||||| ||||||||||||| |||| | | | ||| || |||||||||| |||| |||||||||||| |
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|
| T |
38374809 |
atgtgatgaaagtttacttgcttcaaaaagataaactgaaaaaacagctagctggaatagaaggtagaatgtgtttgagttttcgttgttggacttc |
38374713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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