View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20710_low_4 (Length: 488)
Name: NF20710_low_4
Description: NF20710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20710_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 478
Target Start/End: Original strand, 29378830 - 29379298
Alignment:
| Q |
11 |
acatcattacttgtgacagttggcggaaatacaacttgtaggggagaaagaatgggtttggtcaaggatcattggcactccaaatagtttatgtttacaa |
110 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29378830 |
acatcattacttgtgacagttggcagaaatacaacttgtaggggagaaagaatgggtttggtcaaggatcattggcactccaaatagtttatgtttacaa |
29378929 |
T |
|
| Q |
111 |
aactattggattacagtggnnnnnnnnnnnnnnnnnngaaattgttgacaatagcttataagagaatgaccagccaaaaaccttgatgacttgatgtaca |
210 |
Q |
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| T |
29378930 |
aactattggattacagtggcatcatcatcatcatcatgaaattgttgacaatagcttataagagaatgaccagccaaaaaccttgatgacttgatgtaca |
29379029 |
T |
|
| Q |
211 |
gtttagacagtctagtgaccttattatgctaacaaagatg-gaaggttgaagctataggttatagctatgaagctcacacacgacacgaacacatatacg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29379030 |
gtttagacagtctagtgaccttattatgctaacaaagatgagaaggttgaagctataggttatagctatgaagctcacacacgacacgaatacatatacg |
29379129 |
T |
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| Q |
310 |
ccaacacgataaatatctgacaccgggacatttgtgcttcataggattatagcaacaaagttatgaataagagtatgtcctcttcataaagaaattttat |
409 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29379130 |
ccaacacgatacatatctgacaccggaacatttgtgcttcataggattatagcaacaaagttatgaataagagtatgtcctcttcataaagaaattttat |
29379229 |
T |
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| Q |
410 |
gaatttcataagtagaaattgatcctctaagaaaaagagtacaaattgatagtgtaaataaagtttata |
478 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29379230 |
gaatttcataagtagaaattgatcctctaagaaaaagagtacaaattgatagtgtaaataaagtttata |
29379298 |
T |
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