View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20710_low_5 (Length: 402)
Name: NF20710_low_5
Description: NF20710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20710_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 3883455 - 3883848
Alignment:
| Q |
1 |
ttcttcaatcatttgtgatattctatggtgctttgtagataagctcaacaagcatgggaagattccatgcagcatgctctagtttgaagtgtaaatatag |
100 |
Q |
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| T |
3883455 |
ttcttcaatcatttgtgatattctatggtgctttgtagataagctcaacaagcatgggaagattccatgcagcatgctctagtttgaagcgtaaatatag |
3883554 |
T |
|
| Q |
101 |
cagcttgtcaacttcatcggcatgatttaggatattttaagtttcgtggtgtttgttcacttggagagaacgcatgcctgacattaaatcgagttatttc |
200 |
Q |
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| T |
3883555 |
cagcttgtcaacttcatcggcatgatttaggatattttaagtttcgtggtgtttgttcacttggagagaacgcatgcctgacattaaatcgagttatttc |
3883654 |
T |
|
| Q |
201 |
taatgtattgtagatttttaacttttgtatttttatgtttgttcggcatatagaaatgaggttatcttcatgcattgcaacaataagttatccttgttgt |
300 |
Q |
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| T |
3883655 |
taatgtattgtagatttttaacttttgtatttttgtgtttgtttggcatatagaaatgaggttatcttcatgcattgtaacaataagttatccttgttgt |
3883754 |
T |
|
| Q |
301 |
aaattttacatttcaatttgttgctgcatattttattctgaactggtctgaagaataagtgcctgtttgatcttacattttacgatggacgcgg |
394 |
Q |
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| T |
3883755 |
aaattttacatttcaatttgttgctgcatattttattctgaactggtctgaagaataggtgcctgtttgatcttacattttacgatggatgcgg |
3883848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 3870038 - 3870420
Alignment:
| Q |
1 |
ttcttcaatcatttgtg--atattctatggtgctttgtagataagctcaacaagcatgggaagattccatgcagcatgctctagtttgaagtgtaaatat |
98 |
Q |
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| T |
3870038 |
ttcttcaatcatttatgggatattttatggtgctttgcagataagctcagcgagtatgggaaaatttcgtgcagcatgttctggtttgaagcgtatatac |
3870137 |
T |
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| Q |
99 |
agcagcttgtcaacttcatcggcatgatttaggatattttaagtttcgtggtgtttgttcacttggagagaacgcatgcctgacattaaatcgagttatt |
198 |
Q |
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|||||||||||||||||||| ||||||||||| || ||| | |||| |||||| ||||||||| |||||||| ||| | || || ||||||| |||||| |
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| T |
3870138 |
agcagcttgtcaacttcatcagcatgatttagaatctttgatgttttgtggtgcttgttcactcggagagaaggcacacttggcaataaatcgggttatt |
3870237 |
T |
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| Q |
199 |
tctaatgtattgtagatttttaacttttgtatttttatgtttgttcggcatatagaaatgaggttatcttcatgcattgcaacaataag----------- |
287 |
Q |
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| T |
3870238 |
cctaatgtattgtaaattgttatcttttatattgt--tgtttgtttggcatatagaaatgaggttatcttcatgcattgccacaataagtttttgatgtt |
3870335 |
T |
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| Q |
288 |
ttatccttgttgtaaattttacatttcaatttgttgctgcatattttattctgaactggtctgaagaataagtgcctgtttgatc |
372 |
Q |
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| T |
3870336 |
ttttacttgttgtaaattttatatttcaatttgttgctgcatattgtattctgaaatgttctgaagaataggtgtttgtttgatc |
3870420 |
T |
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